Wall clock time and date at job start Wed Apr 1 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.45039 * 2 1 4 4 C 1.53134 * 109.46324 * 240.02763 * 2 1 3 5 5 C 1.53390 * 109.25026 * 170.17513 * 4 2 1 6 6 C 1.51101 * 108.19235 * 48.94463 * 5 4 2 7 7 N 1.29801 * 127.17160 * 164.30589 * 6 5 4 8 8 C 1.35895 * 108.84807 * 180.25077 * 7 6 5 9 9 C 1.47323 * 126.21006 * 179.85727 * 8 7 6 10 10 O 1.21621 * 119.99829 * 179.68826 * 9 8 7 11 11 N 1.34778 * 120.00048 * 359.70078 * 9 8 7 12 12 C 1.47407 * 125.58889 * 0.02562 * 11 9 8 13 13 C 1.54858 * 104.82037 * 204.36242 * 12 11 9 14 14 C 1.55174 * 101.73309 * 322.77388 * 13 12 11 15 15 H 1.08991 * 113.26045 * 158.95146 * 14 13 12 16 16 C 1.53758 * 108.30549 * 285.38841 * 14 13 12 17 17 N 1.46585 * 108.11157 * 124.37582 * 16 14 13 18 18 C 1.36935 * 125.31416 * 181.28514 * 17 16 14 19 19 H 1.08000 * 119.99832 * 10.01037 * 18 17 16 20 20 C 1.38812 * 120.00284 * 190.01197 * 18 17 16 21 21 N 1.31621 * 119.99608 * 9.44184 * 20 18 17 22 22 Si 1.86796 * 120.00304 * 189.43850 * 20 18 17 23 23 H 1.48504 * 109.47130 * 273.32753 * 22 20 18 24 24 H 1.48501 * 109.46951 * 33.32132 * 22 20 18 25 25 H 1.48498 * 109.47476 * 153.32399 * 22 20 18 26 26 C 1.46715 * 109.37686 * 1.54422 * 17 16 14 27 27 C 1.46703 * 125.58845 * 179.97438 * 11 9 8 28 28 H 1.09001 * 111.53142 * 56.14288 * 27 11 9 29 29 C 1.36573 * 107.57438 * 359.60062 * 8 7 6 30 30 N 1.34863 * 106.78846 * 0.18866 * 29 8 7 31 31 C 1.46580 * 127.50051 * 180.13757 * 30 29 8 32 32 H 1.09001 * 109.47413 * 300.02899 * 1 2 3 33 33 H 1.08994 * 109.47553 * 60.03041 * 1 2 3 34 34 H 1.09003 * 109.47201 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.51032 * 290.10840 * 4 2 1 36 36 H 1.08997 * 109.50841 * 50.19716 * 4 2 1 37 37 H 1.09002 * 109.72024 * 168.62462 * 5 4 2 38 38 H 1.09003 * 109.71616 * 289.22457 * 5 4 2 39 39 H 1.09006 * 110.36796 * 85.52671 * 12 11 9 40 40 H 1.09000 * 110.36806 * 323.20073 * 12 11 9 41 41 H 1.09000 * 110.97855 * 204.65917 * 13 12 11 42 42 H 1.09001 * 111.00652 * 80.89529 * 13 12 11 43 43 H 1.09002 * 109.74554 * 4.69909 * 16 14 13 44 44 H 1.08998 * 109.72818 * 244.03637 * 16 14 13 45 45 H 0.96998 * 120.00078 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.99028 * 101.13844 * 26 17 16 47 47 H 1.09001 * 109.99191 * 222.44939 * 26 17 16 48 48 H 1.08001 * 126.60233 * 180.20803 * 29 8 7 49 49 H 1.09004 * 109.58218 * 282.58174 * 31 30 29 50 50 H 1.08996 * 109.58865 * 42.85709 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0402 -0.7213 -1.2507 5 6 3.5541 -0.5079 -1.3754 6 6 4.1860 -0.8193 -0.0387 7 7 5.4429 -1.0348 0.2035 8 6 5.5980 -1.2839 1.5304 9 6 6.8668 -1.5805 2.2177 10 8 6.8761 -1.7813 3.4172 11 7 8.0173 -1.6290 1.5174 12 6 8.1483 -1.4056 0.0662 13 6 9.4416 -2.1570 -0.3350 14 6 10.3527 -1.8952 0.8935 15 1 11.1635 -2.6172 0.9897 16 6 10.8424 -0.4391 0.8301 17 7 10.4746 0.2205 2.0865 18 6 10.7201 1.5323 2.3932 19 1 11.0736 2.2085 1.6289 20 6 10.5146 1.9929 3.6865 21 7 10.2649 1.1396 4.6570 22 14 10.5924 3.8236 4.0494 23 1 11.9986 4.2145 4.3237 24 1 10.0875 4.5825 2.8770 25 1 9.7532 4.1293 5.2357 26 6 9.8078 -0.7457 2.9665 27 6 9.3447 -1.9118 2.0745 28 1 9.3616 -2.8642 2.6043 29 6 4.3648 -1.2037 2.1119 30 7 3.4887 -0.9127 1.1287 31 6 2.0406 -0.7217 1.2516 32 1 -0.3634 0.5143 0.8897 33 1 -0.3634 0.5133 -0.8902 34 1 -0.3634 -1.0277 0.0005 35 1 1.8285 -1.7874 -1.1680 36 1 1.5414 -0.3185 -2.1322 37 1 3.9579 -1.1745 -2.1374 38 1 3.7583 0.5277 -1.6472 39 1 8.2465 -0.3410 -0.1464 40 1 7.2892 -1.8209 -0.4606 41 1 9.8752 -1.7315 -1.2401 42 1 9.2515 -3.2230 -0.4597 43 1 10.3681 0.0728 -0.0072 44 1 11.9253 -0.4201 0.7076 45 1 10.1209 1.4614 5.5607 46 1 10.5063 -1.1055 3.7219 47 1 8.9468 -0.2804 3.4463 48 1 4.1355 -1.3456 3.1577 49 1 1.5504 -1.6914 1.3398 50 1 1.8249 -0.1216 2.1356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075944811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:32 Heat of formation + Delta-G solvation = 32.996987 kcal Electronic energy + Delta-G solvation = -31332.190673 eV Core-core repulsion = 27359.804891 eV Total energy + Delta-G solvation = -3972.385783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.46029 -41.41974 -39.23067 -38.03990 -36.46406 -34.51393 -33.88227 -32.58775 -32.34197 -30.62936 -29.74427 -28.14016 -27.36612 -26.53020 -25.04312 -24.42428 -23.09269 -22.58920 -22.07905 -20.87074 -20.05278 -19.94526 -18.89157 -18.26429 -17.68860 -16.98192 -16.88600 -16.86729 -16.11904 -15.73919 -15.63245 -15.43555 -15.33074 -14.88092 -14.70009 -14.58418 -14.46559 -14.16467 -14.02496 -13.79991 -13.45062 -13.32971 -13.11323 -13.00298 -12.96689 -12.79645 -12.50311 -12.42298 -12.14415 -12.02745 -11.94756 -11.85578 -11.74563 -11.67574 -11.61593 -11.47676 -11.19102 -10.91505 -10.68985 -10.66010 -9.72023 -9.35929 -8.85080 -7.88081 -5.24642 0.53451 1.37767 1.38484 1.42473 1.50677 1.61097 2.15581 2.45981 2.52765 3.12160 3.28865 3.39163 3.50671 3.59391 3.64652 3.70082 3.79862 3.95109 4.01607 4.05760 4.24782 4.32274 4.36853 4.39366 4.47502 4.49581 4.51683 4.56733 4.69151 4.70638 4.79219 4.88816 4.92724 4.94493 5.00026 5.02341 5.10511 5.12987 5.15824 5.20791 5.30531 5.32533 5.39243 5.40936 5.43765 5.45017 5.64536 5.74257 6.09146 6.19120 6.62650 6.81132 7.05690 7.25375 7.77152 8.41487 9.22370 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.003301 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.992982 B = 8481.319189 C = 9498.342009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.032 4.032 6 C 0.210 3.790 7 N -0.479 5.479 8 C -0.088 4.088 9 C 0.600 3.400 10 O -0.591 6.591 11 N -0.589 5.589 12 C 0.114 3.886 13 C -0.108 4.108 14 C -0.095 4.095 15 H 0.126 0.874 16 C 0.136 3.864 17 N -0.618 5.618 18 C -0.244 4.244 19 H 0.083 0.917 20 C -0.070 4.070 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.276 1.276 24 H -0.269 1.269 25 H -0.298 1.298 26 C 0.189 3.811 27 C 0.115 3.885 28 H 0.083 0.917 29 C 0.037 3.963 30 N -0.448 5.448 31 C 0.096 3.904 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.034 0.966 44 H 0.028 0.972 45 H 0.244 0.756 46 H -0.002 1.002 47 H 0.014 0.986 48 H 0.194 0.806 49 H 0.107 0.893 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.165 -7.391 -17.891 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.071 4.071 6 C -0.055 4.055 7 N -0.198 5.198 8 C -0.216 4.216 9 C 0.390 3.610 10 O -0.473 6.473 11 N -0.319 5.319 12 C -0.008 4.008 13 C -0.146 4.146 14 C -0.114 4.114 15 H 0.144 0.856 16 C 0.012 3.988 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.101 0.899 20 C -0.263 4.263 21 N -0.596 5.596 22 Si 0.806 3.194 23 H -0.202 1.202 24 H -0.194 1.194 25 H -0.224 1.224 26 C 0.063 3.937 27 C 0.010 3.990 28 H 0.101 0.899 29 C -0.104 4.104 30 N -0.128 5.128 31 C -0.024 4.024 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.032 0.968 48 H 0.211 0.789 49 H 0.125 0.875 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.725 -7.334 -17.642 28.930 hybrid contribution -0.008 1.161 2.125 2.422 sum -21.732 -6.173 -15.516 27.407 Atomic orbital electron populations 1.21728 0.91292 1.03262 1.03334 1.21491 0.98298 0.99676 0.92754 0.90596 1.21779 0.92683 1.01777 0.98859 1.20483 0.95254 1.04095 0.87270 1.24459 0.86589 1.03289 0.91175 1.70366 1.17128 1.18771 1.13578 1.20345 0.93174 1.16265 0.91802 1.17089 0.82521 0.76364 0.85060 1.90745 1.87150 1.53843 1.15553 1.48111 1.05401 1.67889 1.10526 1.22486 1.00054 0.99409 0.78829 1.22888 0.92860 1.01732 0.97116 1.23080 0.97044 0.97088 0.94178 0.85585 1.21433 0.97200 0.91695 0.88502 1.44430 1.67378 1.07519 1.15083 1.19388 1.38583 0.85266 0.94083 0.89948 1.25779 1.02609 1.02484 0.95446 1.70242 1.55541 1.33929 0.99936 0.85099 0.77639 0.79567 0.77094 1.20246 1.19417 1.22437 1.20882 0.93899 0.88206 0.90711 1.22512 0.82558 0.97481 0.96460 0.89946 1.22496 0.88726 1.03160 0.96017 1.45526 1.09864 1.50564 1.06877 1.22593 0.74194 1.03754 1.01871 0.91945 0.90558 0.91282 0.90616 0.87270 0.87377 0.88463 0.94115 0.87632 0.87269 0.88459 0.94806 0.95397 0.94663 0.98419 0.96790 0.78865 0.87538 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.51 9.17 71.98 0.66 0.15 16 2 C -0.10 -0.82 2.73 -10.67 -0.03 -0.85 16 3 H 0.08 0.78 8.11 -2.39 -0.02 0.76 16 4 C -0.11 -0.80 5.25 30.77 0.16 -0.64 16 5 C -0.03 -0.43 6.33 30.11 0.19 -0.24 16 6 C 0.21 5.06 7.64 138.05 1.05 6.12 16 7 N -0.48 -15.67 8.36 -176.08 -1.47 -17.14 16 8 C -0.09 -3.36 6.81 40.52 0.28 -3.08 16 9 C 0.60 27.92 7.48 86.63 0.65 28.57 16 10 O -0.59 -31.81 16.60 -4.10 -0.07 -31.88 16 11 N -0.59 -25.47 3.02 -789.29 -2.38 -27.85 16 12 C 0.11 3.96 5.67 86.84 0.49 4.45 16 13 C -0.11 -2.90 6.30 31.97 0.20 -2.70 16 14 C -0.09 -3.31 4.25 -9.01 -0.04 -3.34 16 15 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 16 C 0.14 5.88 6.41 86.62 0.56 6.44 16 17 N -0.62 -34.96 3.38 -697.93 -2.36 -37.32 16 18 C -0.24 -14.90 10.21 84.03 0.86 -14.04 16 19 H 0.08 4.75 7.85 -2.91 -0.02 4.73 16 20 C -0.07 -4.37 5.41 84.86 0.46 -3.92 16 21 N -0.95 -63.70 10.60 21.65 0.23 -63.47 16 22 Si 0.98 49.70 29.56 68.60 2.03 51.73 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 26 C 0.19 10.93 4.92 86.66 0.43 11.36 16 27 C 0.11 5.11 3.65 46.05 0.17 5.28 16 28 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 29 C 0.04 1.14 11.32 83.84 0.95 2.09 16 30 N -0.45 -10.03 3.11 -512.76 -1.60 -11.63 16 31 C 0.10 1.15 6.25 86.44 0.54 1.69 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 36 H 0.11 0.29 8.12 -2.39 -0.02 0.27 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.61 7.49 -2.38 -0.02 1.59 16 40 H 0.11 3.38 6.12 -2.39 -0.01 3.37 16 41 H 0.11 2.37 7.96 -2.39 -0.02 2.35 16 42 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.03 1.41 6.78 -2.39 -0.02 1.39 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.24 16.01 8.31 -92.71 -0.77 15.24 16 46 H 0.00 -0.13 7.79 -2.39 -0.02 -0.15 16 47 H 0.01 0.94 6.34 -2.39 -0.02 0.92 16 48 H 0.19 5.41 8.06 -2.91 -0.02 5.38 16 49 H 0.11 0.91 8.13 -2.39 -0.02 0.89 16 50 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -90.94 386.34 2.89 -88.05 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.93 Total: 12.19 kcal Atomic # 6 Polarization: 29.75 SS G_CDS: 7.57 Total: 37.32 kcal Atomic # 7 Polarization: -149.84 SS G_CDS: -7.58 Total: -157.41 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.07 Total: -31.88 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.03 Total: 51.73 kcal Total: -90.94 2.89 -88.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075944811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.051 kcal (2) G-P(sol) polarization free energy of solvation -90.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds