Wall clock time and date at job start Wed Apr 1 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.54179 * 2 1 4 4 C 1.53134 * 109.51268 * 239.88985 * 2 1 3 5 5 C 1.53237 * 109.53157 * 170.26795 * 4 2 1 6 6 N 1.46576 * 108.78240 * 50.57584 * 5 4 2 7 7 C 1.34878 * 127.49621 * 162.79573 * 6 5 4 8 8 C 1.36565 * 106.78329 * 180.10769 * 7 6 5 9 9 C 1.47326 * 126.21042 * 179.97438 * 8 7 6 10 10 O 1.21626 * 119.99919 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00097 * 180.02562 * 9 8 7 12 12 C 1.47338 * 125.52348 * 359.68937 * 11 9 8 13 13 C 1.55168 * 104.79761 * 156.68569 * 12 11 9 14 14 C 1.54791 * 101.35372 * 37.54062 * 13 12 11 15 15 H 1.09004 * 113.39947 * 85.63912 * 14 13 12 16 16 C 1.55249 * 109.36981 * 213.79209 * 14 13 12 17 17 N 1.46650 * 107.49974 * 84.70979 * 16 14 13 18 18 C 1.36939 * 125.28544 * 196.72942 * 17 16 14 19 19 H 1.08002 * 120.00046 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99990 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00216 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47373 * 59.99730 * 22 20 18 24 24 H 1.48503 * 109.47200 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46889 * 299.99633 * 22 20 18 26 26 C 1.46489 * 109.42652 * 16.75060 * 17 16 14 27 27 C 1.47266 * 125.52168 * 179.97438 * 11 9 8 28 28 H 1.08997 * 111.94479 * 56.59916 * 27 11 9 29 29 N 1.35891 * 107.58208 * 359.97297 * 8 7 6 30 30 C 1.29794 * 108.84952 * 359.97438 * 29 8 7 31 31 C 1.51106 * 127.17330 * 180.11376 * 30 29 8 32 32 H 1.08997 * 109.47250 * 180.10787 * 1 2 3 33 33 H 1.08996 * 109.47294 * 300.11369 * 1 2 3 34 34 H 1.09003 * 109.46940 * 60.11218 * 1 2 3 35 35 H 1.09003 * 109.46097 * 50.24483 * 4 2 1 36 36 H 1.09005 * 109.44560 * 290.27814 * 4 2 1 37 37 H 1.09008 * 109.58044 * 290.78763 * 5 4 2 38 38 H 1.08996 * 109.58494 * 170.37020 * 5 4 2 39 39 H 1.08001 * 126.60459 * 0.10341 * 7 6 5 40 40 H 1.08996 * 110.35415 * 275.63233 * 12 11 9 41 41 H 1.09000 * 110.35495 * 37.92442 * 12 11 9 42 42 H 1.08994 * 111.21794 * 279.47172 * 13 12 11 43 43 H 1.09001 * 110.93204 * 155.48821 * 13 12 11 44 44 H 1.08995 * 110.21459 * 324.92357 * 16 14 13 45 45 H 1.08998 * 109.33999 * 203.99920 * 16 14 13 46 46 H 0.96998 * 120.00094 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.71680 * 238.31775 * 26 17 16 48 48 H 1.09001 * 109.67366 * 117.74302 * 26 17 16 49 49 H 1.09003 * 109.71501 * 283.68852 * 31 30 29 50 50 H 1.08997 * 109.72017 * 44.34512 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0415 -0.7241 -1.2486 5 6 3.5542 -0.5166 -1.3775 6 7 4.1872 -0.8519 -0.0987 7 6 5.4906 -1.1141 0.1284 8 6 5.6136 -1.3750 1.4633 9 6 6.8594 -1.7147 2.1725 10 8 7.9083 -1.7828 1.5606 11 7 6.8368 -1.9500 3.4994 12 6 5.6410 -1.8947 4.3584 13 6 5.9880 -2.7880 5.5787 14 6 7.4867 -2.4579 5.7817 15 1 7.6558 -1.5728 6.3950 16 6 8.2283 -3.7232 6.2908 17 7 8.5892 -4.5250 5.1172 18 6 8.9565 -5.8439 5.1428 19 1 8.9964 -6.3753 6.0822 20 6 9.2774 -6.4981 3.9613 21 7 9.2283 -5.8507 2.8163 22 14 9.7777 -8.2975 3.9960 23 1 8.6715 -9.1079 4.5657 24 1 10.0682 -8.7573 2.6142 25 1 10.9919 -8.4575 4.8359 26 6 8.4964 -3.6956 3.9132 27 6 8.0043 -2.2981 4.3267 28 1 8.7934 -1.5498 4.2531 29 7 4.3783 -1.2645 2.0186 30 6 3.5273 -0.9520 1.0897 31 6 2.0421 -0.7253 1.2508 32 1 -0.3633 -1.0276 0.0019 33 1 -0.3634 0.5156 0.8889 34 1 -0.3633 0.5121 -0.8910 35 1 1.5433 -0.3224 -2.1310 36 1 1.8269 -1.7894 -1.1638 37 1 3.7604 0.5247 -1.6254 38 1 3.9466 -1.1654 -2.1606 39 1 6.2841 -1.1171 -0.6042 40 1 5.4506 -0.8701 4.6776 41 1 4.7758 -2.2951 3.8300 42 1 5.8480 -3.8438 5.3473 43 1 5.4023 -2.4995 6.4516 44 1 7.5796 -4.3004 6.9496 45 1 9.1287 -3.4228 6.8265 46 1 9.4530 -6.3077 1.9907 47 1 7.7902 -4.1417 3.2130 48 1 9.4777 -3.6165 3.4455 49 1 1.5330 -1.6836 1.3547 50 1 1.8572 -0.1123 2.1329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075945956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:18 Heat of formation + Delta-G solvation = 35.305471 kcal Electronic energy + Delta-G solvation = -31084.453917 eV Core-core repulsion = 27112.168238 eV Total energy + Delta-G solvation = -3972.285679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.44590 -41.30021 -39.21023 -37.98188 -36.58736 -34.88827 -33.97723 -32.22147 -31.50556 -30.60808 -30.13886 -28.43100 -27.52562 -26.49518 -25.02787 -24.38100 -23.07555 -22.21288 -22.05351 -20.92392 -20.04343 -20.01782 -18.90520 -18.37731 -17.40729 -17.13690 -17.06860 -16.46806 -16.30753 -15.81121 -15.54462 -15.30680 -15.22625 -14.96315 -14.84248 -14.60431 -14.36427 -14.22451 -14.02465 -13.69643 -13.32747 -13.22902 -13.16025 -13.11282 -12.92244 -12.66038 -12.60821 -12.54047 -12.19639 -12.00526 -11.87603 -11.82868 -11.70905 -11.63875 -11.52313 -11.47182 -11.19425 -10.92174 -10.69999 -10.64689 -9.72940 -9.36521 -8.89923 -7.82723 -5.22987 0.54524 1.39100 1.40872 1.46653 1.52931 1.62575 2.11898 2.48263 2.52549 3.08946 3.32682 3.41628 3.57953 3.61142 3.70174 3.72091 3.77150 3.92908 4.01406 4.06750 4.27887 4.34869 4.36470 4.38469 4.41604 4.46806 4.50140 4.60265 4.73234 4.78851 4.84858 4.87430 4.90783 4.92254 4.97458 5.00797 5.06248 5.10643 5.15201 5.22221 5.28156 5.36162 5.44818 5.46081 5.49702 5.51223 5.62439 5.80932 6.10181 6.18714 6.61830 6.81521 7.06615 7.25404 7.78234 8.40633 9.25008 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002860 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.235948 B = 9786.285674 C =10431.943232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.091 3.909 6 N -0.447 5.447 7 C 0.039 3.961 8 C -0.088 4.088 9 C 0.599 3.401 10 O -0.590 6.590 11 N -0.598 5.598 12 C 0.116 3.884 13 C -0.114 4.114 14 C -0.091 4.091 15 H 0.137 0.863 16 C 0.138 3.862 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.092 0.908 20 C -0.075 4.075 21 N -0.953 5.953 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.299 1.299 25 H -0.272 1.272 26 C 0.206 3.794 27 C 0.115 3.885 28 H 0.073 0.927 29 N -0.478 5.478 30 C 0.210 3.790 31 C -0.027 4.027 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.195 0.805 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.123 0.877 44 H 0.054 0.946 45 H 0.025 0.975 46 H 0.242 0.758 47 H 0.006 0.994 48 H -0.015 1.015 49 H 0.097 0.903 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.165 17.212 -5.751 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.164 4.164 5 C -0.029 4.029 6 N -0.128 5.128 7 C -0.103 4.103 8 C -0.216 4.216 9 C 0.389 3.611 10 O -0.471 6.471 11 N -0.329 5.329 12 C -0.005 4.005 13 C -0.151 4.151 14 C -0.110 4.110 15 H 0.155 0.845 16 C 0.013 3.987 17 N -0.349 5.349 18 C -0.372 4.372 19 H 0.109 0.891 20 C -0.267 4.267 21 N -0.601 5.601 22 Si 0.812 3.188 23 H -0.197 1.197 24 H -0.226 1.226 25 H -0.198 1.198 26 C 0.080 3.920 27 C 0.010 3.990 28 H 0.091 0.909 29 N -0.198 5.198 30 C -0.055 4.055 31 C -0.066 4.066 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.212 0.788 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.141 0.859 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.051 0.949 47 H 0.024 0.976 48 H 0.003 0.997 49 H 0.115 0.885 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.802 16.951 -5.569 28.953 hybrid contribution 1.555 -1.242 -1.365 2.413 sum -21.247 15.709 -6.934 27.318 Atomic orbital electron populations 1.21764 0.92229 1.02727 1.03117 1.21252 0.97751 0.99518 0.92460 0.90040 1.22035 0.91566 1.02294 1.00518 1.22535 0.94948 1.03844 0.81566 1.45574 1.06065 1.50177 1.11027 1.22513 0.87715 1.02730 0.97306 1.20309 0.92306 1.16077 0.92909 1.17140 0.86995 0.76231 0.80761 1.90765 1.33388 1.55693 1.67219 1.48408 1.10753 1.67219 1.06529 1.22567 0.87314 1.00415 0.90251 1.22813 0.94679 0.98982 0.98671 1.23364 0.95924 0.98957 0.92786 0.84510 1.21616 0.96521 0.90955 0.89571 1.44420 1.79778 1.07983 1.02760 1.19482 1.37998 0.85847 0.93861 0.89052 1.25857 1.02630 1.03144 0.95114 1.70345 1.55613 1.36581 0.97592 0.85062 0.78565 0.79082 0.76080 1.19709 1.22591 1.19777 1.20713 0.95806 0.87292 0.88228 1.22688 0.88554 0.95924 0.91814 0.90881 1.70362 0.98826 1.19044 1.31537 1.24384 0.97929 1.02822 0.80324 1.20548 0.81949 1.03103 1.00956 0.92143 0.91750 0.90955 0.86167 0.91082 0.87440 0.87696 0.78830 0.89726 0.89422 0.93431 0.85910 0.92831 0.95697 0.94934 0.97585 0.99674 0.88479 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.17 71.98 0.66 0.07 16 2 C -0.09 -0.66 2.74 -10.62 -0.03 -0.69 16 3 H 0.08 0.60 8.12 -2.38 -0.02 0.58 16 4 C -0.13 -0.81 5.24 30.72 0.16 -0.65 16 5 C 0.09 0.95 6.96 86.44 0.60 1.55 16 6 N -0.45 -9.62 3.11 -512.76 -1.60 -11.21 16 7 C 0.04 1.16 11.32 83.83 0.95 2.11 16 8 C -0.09 -3.30 6.81 40.52 0.28 -3.03 16 9 C 0.60 27.74 7.52 86.63 0.65 28.39 16 10 O -0.59 -31.98 16.93 -4.11 -0.07 -32.05 16 11 N -0.60 -25.71 2.84 -787.82 -2.24 -27.95 16 12 C 0.12 3.87 6.10 86.96 0.53 4.40 16 13 C -0.11 -3.60 6.38 31.95 0.20 -3.39 16 14 C -0.09 -3.18 4.10 -8.63 -0.04 -3.22 16 15 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 16 C 0.14 5.86 6.52 87.12 0.57 6.43 16 17 N -0.62 -35.03 3.37 -695.62 -2.35 -37.38 16 18 C -0.24 -14.61 10.25 84.03 0.86 -13.75 16 19 H 0.09 5.09 7.83 -2.91 -0.02 5.07 16 20 C -0.08 -4.66 5.48 84.86 0.47 -4.19 16 21 N -0.95 -64.60 10.23 21.65 0.22 -64.38 16 22 Si 0.98 49.25 29.55 68.60 2.03 51.28 16 23 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 25 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 26 C 0.21 12.06 4.61 86.66 0.40 12.46 16 27 C 0.11 5.20 3.75 45.90 0.17 5.37 16 28 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 29 N -0.48 -15.23 8.37 -176.08 -1.47 -16.70 16 30 C 0.21 4.93 7.64 138.05 1.05 5.99 16 31 C -0.03 -0.36 5.64 30.11 0.17 -0.19 16 32 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.12 0.13 8.12 -2.39 -0.02 0.11 16 36 H 0.07 0.60 8.11 -2.38 -0.02 0.58 16 37 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.19 5.30 8.06 -2.91 -0.02 5.28 16 40 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.09 3.06 6.17 -2.39 -0.01 3.05 16 42 H 0.05 1.86 7.91 -2.39 -0.02 1.84 16 43 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.05 2.11 7.97 -2.39 -0.02 2.09 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.24 16.09 8.31 -92.71 -0.77 15.32 16 47 H 0.01 0.40 6.86 -2.39 -0.02 0.39 16 48 H -0.01 -1.03 7.51 -2.39 -0.02 -1.04 16 49 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 50 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -91.78 388.60 3.11 -88.68 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.93 Total: 12.06 kcal Atomic # 6 Polarization: 30.00 SS G_CDS: 7.66 Total: 37.66 kcal Atomic # 7 Polarization: -150.19 SS G_CDS: -7.43 Total: -157.62 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.07 Total: -32.05 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.03 Total: 51.28 kcal Total: -91.78 3.11 -88.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075945956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.981 kcal (2) G-P(sol) polarization free energy of solvation -91.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds