Wall clock time and date at job start Wed Apr 1 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.91988 * 2 1 4 4 C 1.55392 * 111.18539 * 235.94361 * 2 1 3 5 5 N 1.47431 * 104.87127 * 204.98146 * 4 2 1 6 6 C 1.36931 * 125.64700 * 204.16955 * 5 4 2 7 7 H 1.07998 * 120.00396 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99909 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99845 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47535 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47325 * 120.00134 * 10 8 6 13 13 H 1.48506 * 109.47006 * 239.99849 * 10 8 6 14 14 C 1.47019 * 108.70142 * 24.13359 * 5 4 2 15 15 C 1.54321 * 107.27531 * 358.94050 * 14 5 4 16 16 H 1.09002 * 110.72109 * 96.17040 * 15 14 5 17 17 N 1.46505 * 110.72218 * 219.26939 * 15 14 5 18 18 C 1.34779 * 119.99500 * 271.15678 * 17 15 14 19 19 O 1.21596 * 120.00068 * 359.97438 * 18 17 15 20 20 C 1.47534 * 119.99762 * 180.02562 * 18 17 15 21 21 C 1.40350 * 120.47536 * 179.97438 * 20 18 17 22 22 C 1.36859 * 118.49180 * 179.97438 * 21 20 18 23 23 C 1.39399 * 119.38215 * 0.02562 * 22 21 20 24 24 N 1.38453 * 119.54212 * 179.97438 * 23 22 21 25 25 C 1.48540 * 111.00270 * 62.59527 * 24 23 22 26 26 C 1.54938 * 103.22700 * 159.72162 * 25 24 23 27 27 C 1.54593 * 102.92272 * 322.58936 * 26 25 24 28 28 C 1.47901 * 111.00434 * 179.97438 * 24 23 22 29 29 N 1.32608 * 120.91706 * 359.97438 * 23 22 21 30 30 C 1.31672 * 121.64199 * 359.72777 * 29 23 22 31 31 H 1.08998 * 109.47366 * 296.09964 * 1 2 3 32 32 H 1.09006 * 109.46883 * 56.09163 * 1 2 3 33 33 H 1.08999 * 109.47315 * 176.09108 * 1 2 3 34 34 H 1.08999 * 110.34334 * 86.13843 * 4 2 1 35 35 H 1.08998 * 110.44545 * 323.87993 * 4 2 1 36 36 H 0.96994 * 119.99831 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.88251 * 239.51790 * 14 5 4 38 38 H 1.09003 * 110.01193 * 118.43165 * 14 5 4 39 39 H 0.96996 * 120.00388 * 91.15027 * 17 15 14 40 40 H 1.07993 * 120.75710 * 359.95734 * 21 20 18 41 41 H 1.08004 * 120.31273 * 180.02562 * 22 21 20 42 42 H 1.09000 * 110.66400 * 278.16212 * 25 24 23 43 43 H 1.09002 * 110.66439 * 41.29032 * 25 24 23 44 44 H 1.08994 * 110.72278 * 204.22675 * 26 25 24 45 45 H 1.09002 * 110.72160 * 80.94588 * 26 25 24 46 46 H 1.08996 * 110.30912 * 263.04207 * 27 26 25 47 47 H 1.09003 * 110.31048 * 140.86939 * 27 26 25 48 48 H 1.09001 * 109.91517 * 333.51053 * 28 24 23 49 49 H 1.09003 * 109.91591 * 94.79514 * 28 24 23 50 50 H 1.07995 * 119.74599 * 180.26438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4326 -1.2461 -0.7690 6 6 4.4723 -1.5694 -1.5994 7 1 4.3446 -1.5162 -2.6705 8 6 5.6906 -1.9654 -1.0645 9 7 5.8464 -2.0298 0.2408 10 14 7.1091 -2.4056 -2.1974 11 1 6.6800 -2.2522 -3.6107 12 1 8.2568 -1.5029 -1.9272 13 1 7.5181 -3.8125 -1.9547 14 6 3.4690 -1.2743 0.7005 15 6 2.0861 -0.8080 1.2022 16 1 1.4467 -1.6633 1.4209 17 7 2.2246 0.0485 2.3827 18 6 2.2451 -0.4993 3.6139 19 8 2.1482 -1.7043 3.7450 20 6 2.3841 0.3632 4.8028 21 6 2.4061 -0.1966 6.0897 22 6 2.5372 0.6412 7.1639 23 6 2.6437 2.0148 6.9510 24 7 2.7760 2.8654 8.0353 25 6 4.0301 2.5866 8.7809 26 6 4.2705 3.8965 9.5726 27 6 3.8191 4.9899 8.5773 28 6 2.8737 4.2740 7.5953 29 7 2.6201 2.5180 5.7243 30 6 2.5014 1.7469 4.6636 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5733 -0.8529 33 1 -0.3634 -1.0252 -0.0701 34 1 2.1643 -0.1784 -2.0848 35 1 1.4599 -1.6760 -1.4044 36 1 6.6975 -2.3069 0.6145 37 1 4.2428 -0.5988 1.0652 38 1 3.6675 -2.2878 1.0494 39 1 2.3017 1.0097 2.2781 40 1 2.3212 -1.2641 6.2291 41 1 2.5580 0.2420 8.1672 42 1 3.8945 1.7454 9.4607 43 1 4.8531 2.3969 8.0919 44 1 5.3263 4.0105 9.8181 45 1 3.6590 3.9197 10.4746 46 1 4.6795 5.3961 8.0457 47 1 3.2885 5.7840 9.1027 48 1 3.2825 4.3202 6.5858 49 1 1.8889 4.7405 7.6215 50 1 2.4899 2.1891 3.6783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080629059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:09 Heat of formation + Delta-G solvation = 22.433727 kcal Electronic energy + Delta-G solvation = -29958.569497 eV Core-core repulsion = 25985.725657 eV Total energy + Delta-G solvation = -3972.843840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.07453 -40.89980 -39.43075 -38.73331 -35.71773 -34.48329 -33.92127 -33.52017 -32.17741 -30.75696 -29.93034 -29.16440 -27.36375 -25.75229 -24.93203 -24.66774 -22.83790 -22.08878 -21.67103 -21.49679 -21.14572 -19.12806 -18.88869 -18.37920 -17.92277 -17.16505 -16.88718 -16.60261 -16.10920 -16.02593 -15.68568 -15.53799 -15.32472 -14.85830 -14.69409 -14.61430 -14.24157 -14.10231 -14.02701 -13.81439 -13.63320 -13.34211 -13.27936 -13.09926 -13.03937 -12.90369 -12.62026 -12.27039 -12.15674 -12.12496 -12.07429 -11.86687 -11.66005 -11.48067 -11.46150 -11.30699 -11.08974 -10.92147 -10.77130 -10.51751 -10.07386 -9.28811 -8.93441 -7.85590 -5.23404 -0.46457 0.16897 1.43642 1.45452 1.55851 1.73198 2.07374 2.46555 2.48561 2.78396 3.20743 3.32839 3.53463 3.60978 3.68258 3.73450 3.77722 3.85955 3.98449 4.00822 4.04692 4.10368 4.16257 4.32082 4.47898 4.52048 4.54614 4.60730 4.66022 4.72441 4.78707 4.88815 4.89876 4.97132 4.98468 5.04639 5.06183 5.09358 5.13985 5.18226 5.25413 5.28535 5.31781 5.44596 5.49724 5.55680 5.60747 5.77135 5.98408 6.15721 6.50294 6.72186 7.05309 7.18612 7.74830 8.38631 9.23715 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.002439 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.729515 B =11478.976277 C =12464.142624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.094 0.906 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.089 0.911 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.980 3.020 11 H -0.260 1.260 12 H -0.292 1.292 13 H -0.296 1.296 14 C 0.189 3.811 15 C 0.136 3.864 16 H 0.076 0.924 17 N -0.695 5.695 18 C 0.563 3.437 19 O -0.581 6.581 20 C -0.222 4.222 21 C -0.005 4.005 22 C -0.181 4.181 23 C 0.318 3.682 24 N -0.467 5.467 25 C 0.038 3.962 26 C -0.118 4.118 27 C -0.130 4.130 28 C 0.030 3.970 29 N -0.531 5.531 30 C 0.168 3.832 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.026 0.974 36 H 0.243 0.757 37 H 0.017 0.983 38 H -0.010 1.010 39 H 0.411 0.589 40 H 0.146 0.854 41 H 0.167 0.833 42 H 0.106 0.894 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 15.747 17.672 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.112 0.888 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.107 0.893 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.809 3.191 11 H -0.184 1.184 12 H -0.219 1.219 13 H -0.224 1.224 14 C 0.062 3.938 15 C 0.030 3.970 16 H 0.094 0.906 17 N -0.346 5.346 18 C 0.351 3.649 19 O -0.462 6.462 20 C -0.229 4.229 21 C -0.031 4.031 22 C -0.203 4.203 23 C 0.086 3.914 24 N -0.184 5.184 25 C -0.087 4.087 26 C -0.156 4.156 27 C -0.168 4.168 28 C -0.096 4.096 29 N -0.246 5.246 30 C 0.009 3.991 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.008 0.992 39 H 0.249 0.751 40 H 0.164 0.836 41 H 0.184 0.816 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.179 15.705 18.011 25.598 hybrid contribution 1.614 -1.282 -1.053 2.315 sum -7.565 14.422 16.958 23.512 Atomic orbital electron populations 1.21653 0.91643 1.02332 1.03054 1.22635 0.97297 0.98940 0.92460 0.88791 1.21948 0.85169 0.95809 0.96369 1.44732 1.09508 1.79249 1.01966 1.19553 0.89958 1.37374 0.89877 0.89284 1.25742 1.00769 1.02508 0.97425 1.70246 1.24146 1.54805 1.11001 0.84975 0.78887 0.76711 0.78559 1.18437 1.21864 1.22379 1.21094 0.92581 0.96562 0.83543 1.22111 0.96605 0.93649 0.84638 0.90603 1.45641 1.73312 1.10980 1.04696 1.18350 0.75546 0.87308 0.83720 1.90765 1.51966 1.16551 1.86946 1.20755 1.12529 0.95383 0.94207 1.21432 0.89581 1.01571 0.90500 1.21450 1.05834 0.91773 1.01227 1.20447 0.90946 0.91318 0.88699 1.61802 1.35101 1.04298 1.17213 1.23503 0.87298 1.01221 0.96643 1.22539 1.02962 0.91802 0.98251 1.22457 0.99034 0.98591 0.96738 1.22956 1.01409 0.85602 0.99660 1.67692 1.18335 1.39920 0.98607 1.23026 0.89596 0.88383 0.98067 0.91398 0.90227 0.92992 0.92525 0.95590 0.94737 0.96437 0.99198 0.75114 0.83576 0.81569 0.87547 0.93370 0.88911 0.89415 0.90787 0.89382 0.91231 0.90127 0.80284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.32 71.98 0.67 -2.32 16 2 C -0.09 -2.92 3.28 -9.23 -0.03 -2.95 16 3 H 0.09 2.67 8.01 -2.39 -0.02 2.65 16 4 C 0.13 5.22 6.72 87.02 0.59 5.80 16 5 N -0.63 -32.91 3.40 -691.01 -2.35 -35.26 16 6 C -0.24 -13.60 10.28 84.04 0.86 -12.73 16 7 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 8 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 9 N -0.95 -60.17 10.31 21.65 0.22 -59.95 16 10 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 14 C 0.19 9.88 5.12 86.73 0.44 10.33 16 15 C 0.14 5.27 2.73 46.18 0.13 5.40 16 16 H 0.08 3.18 7.52 -2.39 -0.02 3.16 16 17 N -0.70 -22.61 5.07 -440.05 -2.23 -24.84 16 18 C 0.56 19.98 7.77 86.69 0.67 20.66 16 19 O -0.58 -25.83 16.09 -4.02 -0.06 -25.89 16 20 C -0.22 -6.30 5.89 -19.99 -0.12 -6.41 16 21 C 0.00 -0.12 9.65 22.46 0.22 0.10 16 22 C -0.18 -3.78 9.38 22.23 0.21 -3.57 16 23 C 0.32 7.02 6.20 133.25 0.83 7.85 16 24 N -0.47 -8.37 5.28 -689.48 -3.64 -12.01 16 25 C 0.04 0.51 6.03 86.65 0.52 1.03 16 26 C -0.12 -1.09 7.06 31.80 0.22 -0.86 16 27 C -0.13 -1.41 6.93 31.46 0.22 -1.19 16 28 C 0.03 0.50 6.34 86.44 0.55 1.05 16 29 N -0.53 -12.70 8.10 -192.32 -1.56 -14.26 16 30 C 0.17 4.03 10.71 85.04 0.91 4.94 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.05 1.27 8.09 -2.39 -0.02 1.25 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.03 1.02 8.00 -2.39 -0.02 1.01 16 36 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.02 1.01 7.27 -2.39 -0.02 1.00 16 38 H -0.01 -0.65 7.51 -2.39 -0.02 -0.66 16 39 H 0.41 10.32 6.59 -92.71 -0.61 9.71 16 40 H 0.15 3.76 7.73 -2.91 -0.02 3.74 16 41 H 0.17 2.52 8.01 -2.91 -0.02 2.49 16 42 H 0.11 1.10 8.11 -2.39 -0.02 1.08 16 43 H 0.05 0.75 7.99 -2.39 -0.02 0.73 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 1.38 6.48 -2.39 -0.02 1.36 16 49 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.18 3.35 6.41 -2.91 -0.02 3.33 16 Total: -1.00 -78.80 397.02 0.10 -78.70 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.33 Total: 21.16 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 7.36 Total: 23.35 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -9.55 Total: -146.33 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.89 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -78.80 0.10 -78.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080629059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.137 kcal (2) G-P(sol) polarization free energy of solvation -78.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds