Wall clock time and date at job start Wed Apr 1 2020 03:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47716 * 2 1 4 4 C 1.34258 * 125.75915 * 125.26843 * 3 2 1 5 5 C 1.38047 * 107.41861 * 180.14959 * 4 3 2 6 6 C 1.47420 * 126.41529 * 179.87247 * 5 4 3 7 7 O 1.21606 * 119.99913 * 8.23044 * 6 5 4 8 8 N 1.34773 * 120.00029 * 188.22927 * 6 5 4 9 9 C 1.48160 * 127.83890 * 5.89778 * 8 6 5 10 10 C 1.54387 * 104.58173 * 140.38695 * 9 8 6 11 11 H 1.09005 * 110.81327 * 263.73792 * 10 9 8 12 12 C 1.54162 * 105.00335 * 23.96394 * 10 9 8 13 13 H 1.09000 * 111.00158 * 239.19683 * 12 10 9 14 14 C 1.48158 * 127.83737 * 185.87103 * 8 6 5 15 15 C 1.53281 * 109.33549 * 116.47792 * 12 10 9 16 16 H 1.09003 * 110.93639 * 182.19396 * 15 12 10 17 17 C 1.53327 * 108.74367 * 60.48130 * 15 12 10 18 18 C 1.52929 * 109.59770 * 299.35493 * 17 15 12 19 19 C 1.52981 * 109.06382 * 141.57326 * 10 9 8 20 20 H 1.09001 * 110.13231 * 65.80768 * 19 10 9 21 21 C 1.53603 * 109.29861 * 305.29836 * 19 10 9 22 22 N 1.47633 * 106.73658 * 300.59814 * 21 19 10 23 23 C 1.36936 * 122.06430 * 179.84750 * 22 21 19 24 24 H 1.08005 * 120.00119 * 174.53256 * 23 22 21 25 25 C 1.38810 * 120.00190 * 354.53791 * 23 22 21 26 26 N 1.31617 * 120.00262 * 156.35067 * 25 23 22 27 27 Si 1.86807 * 119.99668 * 336.35600 * 25 23 22 28 28 H 1.48499 * 109.46788 * 185.84446 * 27 25 23 29 29 H 1.48497 * 109.46932 * 65.84415 * 27 25 23 30 30 H 1.48499 * 109.46925 * 305.84188 * 27 25 23 31 31 C 1.41293 * 107.16630 * 359.60175 * 5 4 3 32 32 N 1.30441 * 108.02630 * 0.24812 * 31 5 4 33 33 H 1.09001 * 109.47279 * 59.99566 * 1 2 3 34 34 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 35 35 H 1.09007 * 109.46762 * 300.00169 * 1 2 3 36 36 H 1.08998 * 109.46885 * 239.99661 * 2 1 3 37 37 H 1.09008 * 109.47107 * 120.00061 * 2 1 3 38 38 H 1.07999 * 126.29121 * 359.97438 * 4 3 2 39 39 H 1.09004 * 110.41092 * 21.61187 * 9 8 6 40 40 H 1.08994 * 110.41485 * 259.16748 * 9 8 6 41 41 H 1.08997 * 110.40349 * 338.32013 * 14 8 6 42 42 H 1.08999 * 110.40561 * 100.74503 * 14 8 6 43 43 H 1.09002 * 109.44819 * 59.39786 * 17 15 12 44 44 H 1.09001 * 109.44944 * 179.34085 * 17 15 12 45 45 H 1.08996 * 109.37849 * 120.81179 * 18 17 15 46 46 H 1.08994 * 109.38409 * 240.49367 * 18 17 15 47 47 H 1.09003 * 110.12499 * 181.21904 * 21 19 10 48 48 H 1.09005 * 109.86897 * 59.83242 * 21 19 10 49 49 H 0.96997 * 120.00064 * 5.01875 * 26 25 23 50 50 H 1.08005 * 125.98355 * 180.20358 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8731 1.9111 0.8895 5 6 3.0709 3.2310 0.5368 6 6 3.9324 4.2033 1.2337 7 8 4.6678 3.8325 2.1284 8 7 3.9051 5.5033 0.8791 9 6 3.0003 6.1617 -0.0920 10 6 2.6579 7.5208 0.5555 11 1 1.7094 7.4671 1.0901 12 6 3.8265 7.8098 1.5185 13 1 3.4707 7.9187 2.5430 14 6 4.7728 6.5983 1.3723 15 6 4.5638 9.0720 1.0574 16 1 5.4203 9.2791 1.6990 17 6 3.5825 10.2500 1.0753 18 6 2.4229 9.9662 0.1195 19 6 2.6064 8.5942 -0.5333 20 1 1.7779 8.3986 -1.2140 21 6 3.9289 8.5886 -1.3146 22 7 5.0011 8.8632 -0.3376 23 6 6.3192 8.9261 -0.7033 24 1 7.0671 9.2159 0.0200 25 6 6.6942 8.6175 -2.0036 26 7 7.8156 9.0985 -2.4970 27 14 5.6071 7.5194 -3.0535 28 1 6.2915 7.2288 -4.3389 29 1 4.3199 8.2093 -3.3229 30 1 5.3458 6.2474 -2.3332 31 6 2.2979 3.4737 -0.6207 32 7 1.6772 2.3690 -0.9306 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3633 0.5139 0.8900 36 1 1.8932 -0.5139 -0.8899 37 1 1.8933 -0.5139 0.8900 38 1 3.3211 1.3996 1.7286 39 1 2.0965 5.5687 -0.2319 40 1 3.5089 6.3116 -1.0443 41 1 5.2051 6.3351 2.3376 42 1 5.5590 6.8152 0.6492 43 1 3.1957 10.3849 2.0854 44 1 4.0984 11.1570 0.7602 45 1 1.4850 9.9801 0.6746 46 1 2.3953 10.7338 -0.6538 47 1 3.9151 9.3637 -2.0808 48 1 4.0839 7.6120 -1.7735 49 1 8.4155 9.6081 -1.9302 50 1 2.2319 4.4101 -1.1549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087345080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:25 Heat of formation + Delta-G solvation = 83.206801 kcal Electronic energy + Delta-G solvation = -32099.889871 eV Core-core repulsion = 28129.681349 eV Total energy + Delta-G solvation = -3970.208522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.57939 -41.99456 -39.82881 -37.11820 -35.50564 -35.28646 -33.36934 -32.58144 -31.98492 -31.56734 -30.42382 -28.57078 -26.85598 -26.02887 -24.89590 -24.27384 -22.99159 -22.54488 -22.13336 -21.49140 -20.52118 -19.71367 -18.57918 -17.79891 -17.74404 -17.40143 -16.99649 -16.66385 -16.50282 -16.26322 -15.70318 -15.59145 -15.21387 -14.84846 -14.84167 -14.55385 -14.33864 -14.03602 -13.89583 -13.59332 -13.55897 -13.40539 -13.24746 -12.99319 -12.94824 -12.78121 -12.58745 -12.46336 -12.25608 -12.02733 -11.92477 -11.81949 -11.61872 -11.54332 -11.15552 -10.95847 -10.82510 -10.70704 -10.61042 -10.21247 -9.91217 -9.54097 -9.01123 -8.53615 -5.30552 0.48723 1.07640 1.36437 1.36965 1.51003 1.69940 2.02999 2.36439 2.57265 3.11628 3.29084 3.37640 3.56352 3.63652 3.73548 3.78510 3.95868 3.98659 4.07529 4.10002 4.22053 4.25401 4.34098 4.35553 4.39072 4.39670 4.43142 4.48074 4.56739 4.65126 4.70607 4.80258 4.83272 4.86410 4.88783 4.95460 4.96627 5.10553 5.16582 5.19696 5.22927 5.29478 5.32639 5.37950 5.43436 5.51223 5.61554 5.74070 5.86289 6.22451 6.45640 6.62539 6.95599 7.15666 7.63148 8.13927 8.96352 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.003738 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.135028 B = 7489.105887 C = 8038.689096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.353 5.353 4 C 0.137 3.863 5 C -0.315 4.315 6 C 0.607 3.393 7 O -0.599 6.599 8 N -0.615 5.615 9 C 0.082 3.918 10 C -0.074 4.074 11 H 0.120 0.880 12 C -0.099 4.099 13 H 0.103 0.897 14 C 0.113 3.887 15 C 0.170 3.830 16 H 0.052 0.948 17 C -0.123 4.123 18 C -0.098 4.098 19 C -0.086 4.086 20 H 0.112 0.888 21 C 0.121 3.879 22 N -0.611 5.611 23 C -0.303 4.303 24 H 0.040 0.960 25 C -0.086 4.086 26 N -0.970 5.970 27 Si 1.094 2.906 28 H -0.328 1.328 29 H -0.232 1.232 30 H -0.291 1.291 31 C 0.069 3.931 32 N -0.311 5.311 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.210 0.790 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.040 0.960 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.030 0.970 48 H 0.023 0.977 49 H 0.244 0.756 50 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.390 -13.836 7.797 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.005 4.005 3 N -0.132 5.132 4 C -0.016 4.016 5 C -0.330 4.330 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.345 5.345 9 C -0.040 4.040 10 C -0.093 4.093 11 H 0.138 0.862 12 C -0.120 4.120 13 H 0.121 0.879 14 C -0.010 4.010 15 C 0.063 3.937 16 H 0.070 0.930 17 C -0.162 4.162 18 C -0.135 4.135 19 C -0.105 4.105 20 H 0.130 0.870 21 C -0.003 4.003 22 N -0.336 5.336 23 C -0.433 4.433 24 H 0.058 0.942 25 C -0.279 4.279 26 N -0.616 5.616 27 Si 0.924 3.076 28 H -0.258 1.258 29 H -0.156 1.156 30 H -0.220 1.220 31 C -0.118 4.118 32 N -0.131 5.131 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.149 0.851 38 H 0.227 0.773 39 H 0.131 0.869 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.040 0.960 49 H 0.053 0.947 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.060 -15.498 5.958 28.416 hybrid contribution 2.439 1.389 1.884 3.380 sum -20.621 -14.109 7.842 26.188 Atomic orbital electron populations 1.22018 0.92847 1.04355 1.02509 1.22301 0.96892 0.74913 1.06366 1.49036 1.33181 1.11564 1.19445 1.23275 0.90939 0.92660 0.94757 1.20142 1.12514 0.95828 1.04475 1.17238 0.81172 0.80271 0.81380 1.90703 1.44652 1.79120 1.33749 1.48726 1.36207 1.06595 1.43019 1.23243 0.94312 0.94120 0.92335 1.22032 0.99166 0.92419 0.95684 0.86202 1.22578 0.95136 0.93943 1.00299 0.87913 1.22345 0.94016 0.85776 0.98873 1.20843 0.95070 0.93260 0.84544 0.92997 1.21927 0.96600 0.97160 1.00493 1.21370 0.98514 0.95208 0.98454 1.21464 0.96308 0.95962 0.96774 0.87031 1.22105 0.89182 0.96447 0.92525 1.44898 1.01361 1.83476 1.03870 1.20104 0.84709 1.41398 0.97086 0.94177 1.26835 1.01615 1.02175 0.97253 1.71035 1.15657 1.39046 1.35817 0.83731 0.75145 0.75553 0.73131 1.25841 1.15633 1.21962 1.24785 0.93771 0.98204 0.95040 1.77109 1.24626 0.97370 1.13999 0.92731 0.87891 0.92608 0.88325 0.85088 0.77300 0.86853 0.91927 0.92195 0.92575 0.89608 0.94140 0.88736 0.92600 0.95198 0.95979 0.94652 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.09 71.98 0.73 -0.65 16 2 C 0.11 1.08 7.21 86.38 0.62 1.70 16 3 N -0.35 -6.74 3.65 -346.30 -1.26 -8.00 16 4 C 0.14 2.97 11.26 84.28 0.95 3.92 16 5 C -0.31 -8.88 6.05 -20.15 -0.12 -9.00 16 6 C 0.61 21.51 7.89 86.66 0.68 22.19 16 7 O -0.60 -25.01 17.16 -4.05 -0.07 -25.08 16 8 N -0.61 -21.04 3.32 -811.72 -2.69 -23.73 16 9 C 0.08 2.27 4.98 86.53 0.43 2.70 16 10 C -0.07 -1.81 3.12 -9.94 -0.03 -1.85 16 11 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 12 C -0.10 -2.95 3.17 -9.83 -0.03 -2.98 16 13 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 14 C 0.11 4.23 6.44 86.54 0.56 4.79 16 15 C 0.17 6.04 3.03 44.97 0.14 6.18 16 16 H 0.05 2.04 8.00 -2.39 -0.02 2.02 16 17 C -0.12 -3.47 5.85 30.68 0.18 -3.29 16 18 C -0.10 -2.31 5.65 30.58 0.17 -2.14 16 19 C -0.09 -2.24 2.87 -10.58 -0.03 -2.27 16 20 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 21 C 0.12 4.65 3.16 86.37 0.27 4.92 16 22 N -0.61 -27.21 1.92 -670.06 -1.29 -28.50 16 23 C -0.30 -17.17 9.45 84.03 0.79 -16.38 16 24 H 0.04 2.50 8.03 -2.91 -0.02 2.47 16 25 C -0.09 -5.18 5.45 84.86 0.46 -4.72 16 26 N -0.97 -63.96 13.70 21.65 0.30 -63.67 16 27 Si 1.09 54.09 24.52 68.60 1.68 55.78 16 28 H -0.33 -17.33 7.11 99.48 0.71 -16.62 16 29 H -0.23 -9.63 5.09 99.48 0.51 -9.12 16 30 H -0.29 -13.86 6.63 99.48 0.66 -13.20 16 31 C 0.07 1.74 10.34 85.65 0.89 2.62 16 32 N -0.31 -7.50 12.33 -56.27 -0.69 -8.19 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.13 0.44 8.06 -2.38 -0.02 0.42 16 38 H 0.21 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.11 2.40 4.89 -2.38 -0.01 2.39 16 40 H 0.06 2.05 4.83 -2.39 -0.01 2.04 16 41 H 0.06 2.31 7.84 -2.39 -0.02 2.30 16 42 H 0.06 2.63 6.29 -2.39 -0.02 2.61 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.03 1.27 6.82 -2.39 -0.02 1.25 16 48 H 0.02 0.93 1.39 -2.38 0.00 0.93 16 49 H 0.24 16.23 8.73 -92.71 -0.81 15.42 16 50 H 0.21 4.57 5.10 -2.91 -0.01 4.55 16 Total: -1.00 -82.84 369.05 3.30 -79.54 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.67 Total: 16.10 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.66 Total: 5.75 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -5.64 Total: -132.09 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.08 kcal Atomic # 14 Polarization: 54.09 SS G_CDS: 1.68 Total: 55.78 kcal Total: -82.84 3.30 -79.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087345080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.744 kcal (2) G-P(sol) polarization free energy of solvation -82.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds