Wall clock time and date at job start Wed Apr 1 2020 03:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46584 * 2 1 4 4 N 1.28441 * 125.19079 * 272.74359 * 3 2 1 5 5 C 1.30862 * 110.92774 * 179.97438 * 4 3 2 6 6 C 1.39679 * 107.85936 * 359.74065 * 5 4 3 7 7 C 1.36600 * 125.18661 * 92.72537 * 3 2 1 8 8 C 1.47158 * 126.88842 * 0.02562 * 7 3 2 9 9 O 1.21633 * 119.99468 * 352.70500 * 8 7 3 10 10 N 1.34778 * 120.00316 * 172.70566 * 8 7 3 11 11 C 1.49007 * 125.86763 * 181.74144 * 10 8 7 12 12 C 1.52080 * 105.23813 * 187.01370 * 11 10 8 13 13 H 1.09002 * 110.59951 * 84.38462 * 12 11 10 14 14 C 1.56300 * 99.44064 * 327.43043 * 12 11 10 15 15 H 1.09001 * 104.18348 * 297.34108 * 14 12 11 16 16 C 1.49317 * 101.42911 * 47.37237 * 14 12 11 17 17 C 1.49073 * 106.17243 * 185.41734 * 14 12 11 18 18 H 1.08995 * 114.09673 * 211.51129 * 17 14 12 19 19 C 1.56363 * 102.65812 * 87.10968 * 17 14 12 20 20 C 1.54064 * 105.07040 * 324.22441 * 19 17 14 21 21 C 1.53067 * 120.29545 * 215.61110 * 12 11 10 22 22 H 1.09002 * 113.68743 * 317.90030 * 21 12 11 23 23 C 1.56707 * 102.05245 * 194.20713 * 21 12 11 24 24 N 1.44449 * 104.83656 * 322.12693 * 23 21 12 25 25 C 1.36935 * 121.54561 * 145.60986 * 24 23 21 26 26 H 1.08000 * 119.99953 * 204.52497 * 25 24 23 27 27 C 1.38818 * 120.00173 * 24.51484 * 25 24 23 28 28 N 1.31613 * 119.99794 * 358.57680 * 27 25 24 29 29 Si 1.86800 * 119.99687 * 178.57636 * 27 25 24 30 30 H 1.48494 * 109.47471 * 0.02562 * 29 27 25 31 31 H 1.48505 * 109.47128 * 120.00428 * 29 27 25 32 32 H 1.48498 * 109.46776 * 239.99989 * 29 27 25 33 33 H 1.09000 * 109.47137 * 304.97023 * 1 2 3 34 34 H 1.09000 * 109.47512 * 64.97838 * 1 2 3 35 35 H 1.09010 * 109.46947 * 184.97746 * 1 2 3 36 36 H 1.08999 * 109.46680 * 240.00363 * 2 1 3 37 37 H 1.08997 * 109.47066 * 119.99671 * 2 1 3 38 38 H 1.07998 * 126.07207 * 180.02562 * 5 4 3 39 39 H 1.08002 * 127.31731 * 180.30502 * 6 5 4 40 40 H 1.08992 * 110.30249 * 306.08819 * 11 10 8 41 41 H 1.09004 * 110.29639 * 68.23039 * 11 10 8 42 42 H 1.08992 * 110.90408 * 198.19211 * 16 14 12 43 43 H 1.09003 * 110.89866 * 74.59564 * 16 14 12 44 44 H 1.09000 * 109.95553 * 205.61548 * 19 17 14 45 45 H 1.08998 * 111.03048 * 83.38738 * 19 17 14 46 46 H 1.09001 * 109.41306 * 203.14950 * 20 19 17 47 47 H 1.09009 * 109.35007 * 83.33973 * 20 19 17 48 48 H 1.08998 * 110.30873 * 80.72362 * 23 21 12 49 49 H 1.09002 * 110.30558 * 202.93076 * 23 21 12 50 50 H 0.97003 * 119.99847 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2175 2.0960 -1.0485 5 6 2.6542 3.2868 -0.7264 6 6 2.7403 3.3493 0.6663 7 6 2.3306 2.1058 1.1151 8 6 2.2429 1.6564 2.5137 9 8 1.7352 0.5828 2.7767 10 7 2.7251 2.4343 3.5030 11 6 2.7378 2.0941 4.9537 12 6 3.2139 3.3562 5.6561 13 1 2.3803 4.0373 5.8277 14 6 4.1792 3.9114 4.5593 15 1 4.9502 3.1461 4.4699 16 6 3.3344 3.7924 3.3338 17 6 4.8439 5.1046 5.1565 18 1 5.0969 5.8810 4.4346 19 6 6.0740 4.4794 5.8919 20 6 5.5725 3.1266 6.4324 21 6 4.1020 3.2599 6.8990 22 1 3.7939 2.4826 7.5983 23 6 4.0207 4.7159 7.4729 24 7 4.0168 5.5723 6.3096 25 6 3.3057 6.7422 6.2837 26 1 2.9856 7.1587 5.3401 27 6 2.9960 7.3927 7.4703 28 7 3.3616 6.8706 8.6217 29 14 2.0604 9.0091 7.4325 30 1 1.7677 9.3789 6.0244 31 1 0.7858 8.8609 8.1800 32 1 2.8834 10.0721 8.0632 33 1 -0.3633 0.5890 0.8421 34 1 -0.3634 0.4346 -0.9312 35 1 -0.3633 -1.0239 0.0892 36 1 1.8932 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 2.8996 4.0818 -1.4149 39 1 3.0604 4.1889 1.2655 40 1 1.7353 1.8282 5.2886 41 1 3.4307 1.2744 5.1438 42 1 3.9471 3.8343 2.4335 43 1 2.5650 4.5643 3.3155 44 1 6.3819 5.1236 6.7155 45 1 6.9047 4.3256 5.2033 46 1 6.1934 2.8202 7.2742 47 1 5.6357 2.3767 5.6438 48 1 3.0994 4.8479 8.0402 49 1 4.8867 4.9237 8.1013 50 1 3.1456 7.3254 9.4509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087352855.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:37 Heat of formation + Delta-G solvation = 116.162642 kcal Electronic energy + Delta-G solvation = -31915.346349 eV Core-core repulsion = 27946.566900 eV Total energy + Delta-G solvation = -3968.779449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.57272 -42.54046 -40.12890 -37.58337 -35.51825 -35.06053 -32.95539 -32.22750 -31.79217 -31.01202 -30.72203 -28.79016 -27.16476 -26.01443 -24.84778 -23.55565 -23.38145 -22.75813 -21.89769 -21.66462 -20.41508 -19.16009 -18.45891 -18.25186 -17.76393 -17.18240 -16.95876 -16.44133 -16.28921 -16.15459 -15.99975 -15.58924 -15.44611 -14.92012 -14.58957 -14.34701 -14.33041 -14.00099 -13.82536 -13.60600 -13.53202 -13.13037 -13.03013 -12.90737 -12.86109 -12.52674 -12.38388 -12.32561 -12.26356 -12.20930 -12.04002 -11.89207 -11.80443 -11.66549 -11.20026 -11.14265 -10.61280 -10.53851 -10.37875 -10.28957 -10.01084 -9.74963 -8.60653 -7.76886 -5.20658 0.20074 1.26135 1.48160 1.50989 1.58959 1.65081 1.95516 2.10684 2.54148 3.14640 3.38196 3.45746 3.53105 3.55999 3.90672 3.97359 3.99315 4.07715 4.12336 4.19402 4.25628 4.28573 4.32730 4.36635 4.49100 4.54533 4.58189 4.66488 4.68987 4.74163 4.83037 4.86090 4.86953 4.87613 4.97546 5.03740 5.08085 5.11181 5.12650 5.25307 5.35772 5.50086 5.54576 5.56057 5.65211 5.72075 5.75519 5.77750 5.95118 6.31259 6.43568 6.86818 7.08647 7.26735 7.94675 8.48866 9.27715 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.003218 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.062579 B = 8698.337541 C = 9359.260549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.109 3.891 3 N -0.264 5.264 4 N -0.295 5.295 5 C -0.005 4.005 6 C -0.193 4.193 7 C -0.054 4.054 8 C 0.599 3.401 9 O -0.576 6.576 10 N -0.603 5.603 11 C 0.129 3.871 12 C -0.080 4.080 13 H 0.062 0.938 14 C -0.135 4.135 15 H 0.088 0.912 16 C 0.118 3.882 17 C 0.181 3.819 18 H 0.091 0.909 19 C -0.126 4.126 20 C -0.105 4.105 21 C -0.105 4.105 22 H 0.088 0.912 23 C 0.204 3.796 24 N -0.604 5.604 25 C -0.242 4.242 26 H 0.074 0.926 27 C -0.054 4.054 28 N -0.942 5.942 29 Si 0.960 3.040 30 H -0.264 1.264 31 H -0.300 1.300 32 H -0.297 1.297 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.219 0.781 39 H 0.190 0.810 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.036 0.964 49 H -0.006 1.006 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -11.224 -16.046 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 N -0.053 5.053 4 N -0.127 5.127 5 C -0.180 4.180 6 C -0.222 4.222 7 C -0.182 4.182 8 C 0.388 3.612 9 O -0.457 6.457 10 N -0.336 5.336 11 C 0.008 3.992 12 C -0.100 4.100 13 H 0.080 0.920 14 C -0.156 4.156 15 H 0.106 0.894 16 C -0.002 4.002 17 C 0.075 3.925 18 H 0.109 0.891 19 C -0.164 4.164 20 C -0.142 4.142 21 C -0.125 4.125 22 H 0.107 0.893 23 C 0.078 3.922 24 N -0.327 5.327 25 C -0.372 4.372 26 H 0.092 0.908 27 C -0.248 4.248 28 N -0.590 5.590 29 Si 0.790 3.210 30 H -0.189 1.189 31 H -0.228 1.228 32 H -0.224 1.224 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.235 0.765 39 H 0.207 0.793 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.054 0.946 49 H 0.011 0.989 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.262 -12.586 -16.731 20.974 hybrid contribution -0.583 1.654 1.601 2.375 sum 0.680 -10.931 -15.130 18.678 Atomic orbital electron populations 1.22010 0.92927 1.04381 1.01878 1.22287 0.96711 0.76047 1.05989 1.46056 1.44760 1.12963 1.01512 1.73166 1.19095 1.06458 1.14022 1.24201 1.03185 0.95138 0.95463 1.23180 1.05632 0.97122 0.96236 1.21331 1.12414 0.95307 0.89116 1.16723 0.77959 0.83264 0.83245 1.90743 1.47135 1.23471 1.84363 1.49381 1.58840 1.18757 1.06574 1.21685 1.01191 0.97954 0.78412 1.22014 0.97968 0.94519 0.95495 0.91998 1.22055 0.98510 1.01057 0.93932 0.89394 1.21822 0.96714 0.82242 0.99424 1.20897 0.89305 0.93093 0.89166 0.89141 1.22952 0.97601 0.96194 0.99693 1.22105 0.94692 0.97135 1.00284 1.22818 0.94697 0.98853 0.96162 0.89333 1.20806 0.97785 0.85800 0.87807 1.44624 1.53380 1.21883 1.12848 1.19547 1.26194 0.98800 0.92665 0.90785 1.25735 1.02441 1.00857 0.95807 1.70162 1.52166 1.39724 0.96934 0.85290 0.77257 0.80738 0.77741 1.18873 1.22784 1.22409 0.94142 0.91659 0.88021 0.86493 0.87838 0.76488 0.79315 0.92094 0.90422 0.86622 0.90993 0.93971 0.89658 0.92234 0.90578 0.94568 0.98852 0.94663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.24 71.98 0.74 -2.09 16 2 C 0.11 2.18 6.52 86.38 0.56 2.75 16 3 N -0.26 -6.51 3.35 -334.68 -1.12 -7.63 16 4 N -0.29 -7.00 11.90 -57.14 -0.68 -7.68 16 5 C 0.00 -0.09 12.03 85.19 1.02 0.93 16 6 C -0.19 -4.11 9.35 22.66 0.21 -3.90 16 7 C -0.05 -1.40 6.92 40.79 0.28 -1.12 16 8 C 0.60 17.73 7.84 86.59 0.68 18.41 16 9 O -0.58 -19.45 15.09 -4.14 -0.06 -19.51 16 10 N -0.60 -16.71 3.42 -819.20 -2.80 -19.51 16 11 C 0.13 3.72 6.58 85.59 0.56 4.28 16 12 C -0.08 -2.58 2.40 -9.93 -0.02 -2.61 16 13 H 0.06 2.50 7.25 -2.39 -0.02 2.49 16 14 C -0.13 -3.75 2.40 -12.07 -0.03 -3.78 16 15 H 0.09 2.22 4.74 -2.39 -0.01 2.21 16 16 C 0.12 2.90 5.16 84.56 0.44 3.33 16 17 C 0.18 6.06 4.59 44.35 0.20 6.27 16 18 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 19 C -0.13 -3.84 5.63 32.12 0.18 -3.66 16 20 C -0.10 -2.96 5.29 31.58 0.17 -2.79 16 21 C -0.11 -3.52 4.32 -8.85 -0.04 -3.56 16 22 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 23 C 0.20 9.23 3.84 88.06 0.34 9.57 16 24 N -0.60 -26.88 1.89 -668.91 -1.26 -28.14 16 25 C -0.24 -12.24 9.95 84.04 0.84 -11.41 16 26 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 27 C -0.05 -2.91 5.35 84.86 0.45 -2.46 16 28 N -0.94 -53.96 10.44 21.65 0.23 -53.73 16 29 Si 0.96 43.88 29.55 68.60 2.03 45.91 16 30 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 31 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 32 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 2.31 6.33 -2.39 -0.02 2.29 16 38 H 0.22 2.59 8.06 -2.91 -0.02 2.56 16 39 H 0.19 3.27 4.87 -2.91 -0.01 3.26 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.12 2.20 5.39 -2.39 -0.01 2.19 16 43 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 44 H 0.04 1.57 7.14 -2.39 -0.02 1.56 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.08 1.82 6.39 -2.38 -0.02 1.81 16 48 H 0.04 1.93 6.56 -2.39 -0.02 1.91 16 49 H -0.01 -0.32 7.06 -2.39 -0.02 -0.34 16 50 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -66.33 374.80 3.87 -62.46 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.95 Total: 19.69 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 6.59 Total: 8.16 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -5.64 Total: -116.70 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.33 3.87 -62.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087352855.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.626 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds