Wall clock time and date at job start Wed Apr 1 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47130 * 2 1 4 4 C 1.35397 * 126.43756 * 264.99398 * 3 2 1 5 5 C 1.35560 * 107.16047 * 179.97438 * 4 3 2 6 6 N 1.33102 * 108.35118 * 359.77965 * 5 4 3 7 7 C 1.31620 * 109.09182 * 0.36954 * 6 5 4 8 8 C 1.47410 * 125.86168 * 179.89159 * 7 6 5 9 9 O 1.21601 * 119.99712 * 179.69040 * 8 7 6 10 10 N 1.34778 * 119.99976 * 359.68939 * 8 7 6 11 11 C 1.48142 * 127.83619 * 0.02562 * 10 8 7 12 12 C 1.54357 * 104.62304 * 219.44628 * 11 10 8 13 13 H 1.08999 * 111.42835 * 216.23453 * 12 11 10 14 14 C 1.54166 * 105.04546 * 336.39907 * 12 11 10 15 15 H 1.09002 * 110.87163 * 239.34225 * 14 12 11 16 16 C 1.48154 * 127.83298 * 179.97438 * 10 8 7 17 17 C 1.53022 * 109.72921 * 116.59258 * 14 12 11 18 18 H 1.08998 * 110.15393 * 180.13301 * 17 14 12 19 19 C 1.53061 * 109.16123 * 300.57404 * 17 14 12 20 20 C 1.52917 * 110.00269 * 59.24678 * 19 17 14 21 21 C 1.53214 * 108.99723 * 93.57979 * 12 11 10 22 22 H 1.09005 * 110.51639 * 67.34403 * 21 12 11 23 23 N 1.47647 * 108.07099 * 188.97540 * 21 12 11 24 24 C 1.36938 * 122.03910 * 238.62232 * 23 21 12 25 25 H 1.08003 * 120.00523 * 354.11528 * 24 23 21 26 26 C 1.38818 * 119.99782 * 174.11137 * 24 23 21 27 27 N 1.31611 * 120.00136 * 7.88241 * 26 24 23 28 28 Si 1.86798 * 119.99831 * 187.87579 * 26 24 23 29 29 H 1.48498 * 109.47138 * 94.98956 * 28 26 24 30 30 H 1.48500 * 109.47224 * 214.99132 * 28 26 24 31 31 H 1.48497 * 109.47414 * 334.99080 * 28 26 24 32 32 C 1.47572 * 115.92160 * 58.60640 * 23 21 12 33 33 H 1.09004 * 109.46419 * 60.00210 * 1 2 3 34 34 H 1.08995 * 109.46968 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47384 * 300.00567 * 1 2 3 36 36 H 1.08996 * 109.47384 * 239.99432 * 2 1 3 37 37 H 1.09004 * 109.46419 * 119.99790 * 2 1 3 38 38 H 1.08002 * 126.42343 * 0.02691 * 4 3 2 39 39 H 1.08007 * 125.82359 * 180.02562 * 5 4 3 40 40 H 1.09007 * 110.40723 * 100.66105 * 11 10 8 41 41 H 1.09002 * 110.41099 * 338.23409 * 11 10 8 42 42 H 1.08995 * 110.41347 * 21.58105 * 16 10 8 43 43 H 1.09004 * 110.51067 * 259.18539 * 16 10 8 44 44 H 1.09008 * 109.38348 * 299.08618 * 19 17 14 45 45 H 1.08993 * 109.38716 * 179.40945 * 19 17 14 46 46 H 1.09009 * 109.44497 * 240.79619 * 20 19 17 47 47 H 1.09003 * 109.41905 * 120.87822 * 20 19 17 48 48 H 0.96994 * 120.00474 * 180.02562 * 27 26 24 49 49 H 1.08999 * 109.99738 * 241.01065 * 32 23 21 50 50 H 1.08999 * 110.07469 * 119.66784 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3761 2.1077 -1.0851 5 6 2.7652 3.3274 -0.6393 6 7 2.6437 3.3475 0.6860 7 6 2.1980 2.1786 1.0952 8 6 1.9323 1.7974 2.4942 9 8 1.5146 0.6849 2.7522 10 7 2.1524 2.6818 3.4871 11 6 2.6540 4.0709 3.3721 12 6 3.6124 4.2396 4.5703 13 1 3.5570 5.2457 4.9859 14 6 3.1507 3.1917 5.6026 15 1 2.8650 3.6695 6.5398 16 6 1.9464 2.4854 4.9411 17 6 4.2638 2.1669 5.8316 18 1 3.9436 1.4209 6.5590 19 6 4.5964 1.4815 4.5040 20 6 5.0468 2.5211 3.4770 21 6 5.0394 3.9143 4.1173 22 1 5.3951 4.6624 3.4087 23 7 5.9011 3.8687 5.3154 24 6 6.9912 4.6852 5.4577 25 1 7.2992 5.3220 4.6416 26 6 7.7004 4.6943 6.6510 27 7 7.4242 3.8118 7.5875 28 14 9.0469 5.9592 6.9275 29 1 8.4890 7.1238 7.6607 30 1 10.1417 5.3504 7.7250 31 1 9.5804 6.4089 5.6167 32 6 5.5157 2.8899 6.3503 33 1 -0.3632 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3634 0.5139 0.8899 36 1 1.8934 -0.5139 -0.8899 37 1 1.8933 -0.5138 0.8901 38 1 2.3545 1.7778 -2.1133 39 1 3.1108 4.1447 -1.2550 40 1 1.8291 4.7800 3.4424 41 1 3.1920 4.2043 2.4335 42 1 1.9474 1.4232 5.1852 43 1 1.0120 2.9472 5.2602 44 1 3.7116 0.9650 4.1318 45 1 5.3964 0.7580 4.6609 46 1 4.3657 2.5092 2.6260 47 1 6.0550 2.2828 3.1382 48 1 7.9194 3.8184 8.4215 49 1 5.2889 3.4044 7.2840 50 1 6.3220 2.1732 6.5063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087354032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:49 Heat of formation + Delta-G solvation = 79.010039 kcal Electronic energy + Delta-G solvation = -32758.259765 eV Core-core repulsion = 28787.869258 eV Total energy + Delta-G solvation = -3970.390507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.41340 -40.78087 -38.41001 -35.82560 -35.01181 -32.99413 -31.68957 -30.98579 -30.38021 -29.67254 -29.43761 -27.25372 -25.31521 -24.60213 -23.86498 -22.24958 -21.83330 -21.47255 -20.81953 -20.49341 -19.24095 -17.60099 -16.96184 -16.64472 -16.54655 -16.03512 -15.58566 -15.16822 -14.77421 -14.61266 -14.42434 -14.13821 -13.92085 -13.79834 -13.65157 -13.21889 -12.86343 -12.71646 -12.34776 -12.30931 -12.19220 -11.96111 -11.82253 -11.59756 -11.38817 -11.28694 -11.13545 -10.90844 -10.76323 -10.58452 -10.38900 -10.21665 -10.09273 -9.92222 -9.89015 -9.73168 -9.49747 -9.19173 -9.09792 -8.73927 -8.39130 -8.36813 -6.74957 -5.60185 -2.94766 1.33645 2.29361 2.57045 3.19220 3.44437 3.45586 3.50317 3.51776 4.25002 4.41470 4.55342 4.55781 4.72714 4.98562 4.99376 5.06613 5.17547 5.26198 5.27823 5.37100 5.49771 5.52382 5.54683 5.64414 5.73284 5.77961 5.80460 5.82418 5.91116 5.94818 6.01650 6.20346 6.23746 6.26626 6.34975 6.37759 6.42484 6.56173 6.58345 6.68608 6.81964 6.83991 6.90223 7.00104 7.10042 7.15948 7.61103 7.72440 7.73310 7.78989 7.98130 8.19448 8.40317 9.33875 9.95590 10.50881 11.45753 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.003442 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.229959 B = 8132.187694 C = 8763.442639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.415 5.415 4 C -0.035 4.035 5 C -0.029 4.029 6 N -0.439 5.439 7 C 0.152 3.848 8 C 0.625 3.375 9 O -0.552 6.552 10 N -0.585 5.585 11 C 0.094 3.906 12 C -0.109 4.109 13 H 0.085 0.915 14 C -0.081 4.081 15 H 0.084 0.916 16 C 0.112 3.888 17 C -0.109 4.109 18 H 0.062 0.938 19 C -0.101 4.101 20 C -0.127 4.127 21 C 0.185 3.815 22 H 0.066 0.934 23 N -0.601 5.601 24 C -0.232 4.232 25 H 0.074 0.926 26 C -0.008 4.008 27 N -0.921 5.921 28 Si 0.905 3.095 29 H -0.290 1.290 30 H -0.293 1.293 31 H -0.282 1.282 32 C 0.203 3.797 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.063 0.937 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.249 0.751 49 H 0.050 0.950 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.676 -5.273 -15.274 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.096 5.096 4 C -0.173 4.173 5 C -0.182 4.182 6 N -0.160 5.160 7 C -0.107 4.107 8 C 0.411 3.589 9 O -0.430 6.430 10 N -0.316 5.316 11 C -0.029 4.029 12 C -0.130 4.130 13 H 0.104 0.896 14 C -0.100 4.100 15 H 0.102 0.898 16 C -0.010 4.010 17 C -0.128 4.128 18 H 0.080 0.920 19 C -0.138 4.138 20 C -0.167 4.167 21 C 0.076 3.924 22 H 0.084 0.916 23 N -0.324 5.324 24 C -0.361 4.361 25 H 0.092 0.908 26 C -0.204 4.204 27 N -0.569 5.569 28 Si 0.736 3.264 29 H -0.218 1.218 30 H -0.220 1.220 31 H -0.208 1.208 32 C 0.079 3.921 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.197 0.803 39 H 0.194 0.806 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.667 -5.475 -14.462 21.313 hybrid contribution 0.654 0.004 -0.466 0.802 sum -14.014 -5.471 -14.927 21.193 Atomic orbital electron populations 1.22054 0.93649 1.03291 1.02917 1.22106 0.96226 0.78957 1.05330 1.45248 1.45369 1.12840 1.06129 1.22867 1.07282 0.94151 0.92970 1.22482 1.06967 0.97444 0.91273 1.70250 1.15084 1.18573 1.12083 1.22600 1.09740 0.88333 0.90063 1.15861 0.78186 0.83516 0.81301 1.90772 1.48530 1.20391 1.83348 1.48471 1.62330 1.14476 1.06344 1.22958 0.97195 0.80545 1.02162 1.22739 0.97021 0.99134 0.94092 0.89620 1.22018 0.93794 0.96100 0.98135 0.89766 1.22544 0.98170 1.01905 0.78370 1.21825 0.97661 0.96723 0.96622 0.91968 1.21378 0.99408 0.97406 0.95632 1.22058 0.99772 0.97379 0.97452 1.20510 0.88426 0.94124 0.89305 0.91596 1.44605 1.28766 1.42447 1.16594 1.19293 1.03463 1.15464 0.97865 0.90798 1.24787 0.99847 0.99100 0.96652 1.70043 1.43592 1.35828 1.07487 0.86193 0.81289 0.81269 0.77626 1.21782 1.22021 1.20780 1.21072 0.90272 0.90363 0.90352 0.92386 0.90423 0.91342 0.89101 0.87185 0.80290 0.80618 0.91859 0.86529 0.89976 0.91408 0.93493 0.93367 0.93084 0.93197 0.93994 0.93160 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.23 37.16 0.38 -0.95 16 2 C 0.10 0.88 6.18 -4.04 -0.02 0.85 16 3 N -0.42 -4.81 2.76 -114.58 -0.32 -5.12 16 4 C -0.03 -0.33 11.53 -16.94 -0.20 -0.52 16 5 C -0.03 -0.32 11.85 -17.96 -0.21 -0.53 16 6 N -0.44 -6.22 8.18 -11.26 -0.09 -6.31 16 7 C 0.15 2.20 7.04 -154.52 -1.09 1.11 16 8 C 0.62 9.94 5.98 -12.53 -0.07 9.87 16 9 O -0.55 -9.41 14.57 5.28 0.08 -9.33 16 10 N -0.59 -9.01 1.73 -170.52 -0.29 -9.30 16 11 C 0.09 1.42 5.41 -2.43 -0.01 1.40 16 12 C -0.11 -1.88 3.38 -89.19 -0.30 -2.18 16 13 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 14 C -0.08 -1.36 3.19 -89.22 -0.28 -1.64 16 15 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.11 1.65 5.81 -2.35 -0.01 1.64 16 17 C -0.11 -2.10 2.71 -90.27 -0.24 -2.34 16 18 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 19 C -0.10 -1.92 5.07 -26.74 -0.14 -2.06 16 20 C -0.13 -2.48 5.29 -26.60 -0.14 -2.62 16 21 C 0.18 3.77 3.02 -67.02 -0.20 3.56 16 22 H 0.07 1.36 8.02 -51.93 -0.42 0.94 16 23 N -0.60 -14.85 2.87 -163.26 -0.47 -15.32 16 24 C -0.23 -6.35 9.97 -15.06 -0.15 -6.50 16 25 H 0.07 1.98 7.82 -52.48 -0.41 1.57 16 26 C -0.01 -0.23 5.46 -17.43 -0.10 -0.32 16 27 N -0.92 -26.78 9.82 55.49 0.55 -26.23 16 28 Si 0.91 22.14 29.56 -169.99 -5.02 17.11 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 31 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 32 C 0.20 4.91 4.37 -3.15 -0.01 4.90 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 36 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 37 H 0.11 1.23 6.64 -51.93 -0.34 0.88 16 38 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.12 1.84 4.59 -51.93 -0.24 1.60 16 42 H 0.08 1.26 7.03 -51.93 -0.36 0.90 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.87 5.15 -51.92 -0.27 0.61 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.94 4.53 -51.92 -0.24 0.70 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.05 1.34 7.14 -51.93 -0.37 0.97 16 50 H 0.05 1.25 7.35 -51.93 -0.38 0.87 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -32.01 369.22 -10.46 -42.48 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.64 Total: 2.80 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.81 Total: 3.67 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.63 Total: -62.28 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.01 -10.46 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087354032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.485 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds