Wall clock time and date at job start Wed Apr 1 2020 03:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47130 * 2 1 4 4 C 1.35397 * 126.43756 * 264.99398 * 3 2 1 5 5 C 1.35560 * 107.16047 * 179.97438 * 4 3 2 6 6 N 1.33102 * 108.35118 * 359.77965 * 5 4 3 7 7 C 1.31620 * 109.09182 * 0.36954 * 6 5 4 8 8 C 1.47410 * 125.86168 * 179.89159 * 7 6 5 9 9 O 1.21601 * 119.99712 * 179.69040 * 8 7 6 10 10 N 1.34778 * 119.99976 * 359.68939 * 8 7 6 11 11 C 1.48142 * 127.83619 * 0.02562 * 10 8 7 12 12 C 1.54357 * 104.62304 * 219.44628 * 11 10 8 13 13 H 1.08999 * 111.42835 * 216.23453 * 12 11 10 14 14 C 1.54166 * 105.04546 * 336.39907 * 12 11 10 15 15 H 1.09002 * 110.87163 * 239.34225 * 14 12 11 16 16 C 1.48154 * 127.83298 * 179.97438 * 10 8 7 17 17 C 1.53022 * 109.72921 * 116.59258 * 14 12 11 18 18 H 1.08998 * 110.15393 * 180.13301 * 17 14 12 19 19 C 1.53061 * 109.16123 * 300.57404 * 17 14 12 20 20 C 1.52917 * 110.00269 * 59.24678 * 19 17 14 21 21 C 1.53214 * 108.99723 * 93.57979 * 12 11 10 22 22 H 1.09005 * 110.51639 * 67.34403 * 21 12 11 23 23 N 1.47647 * 108.07099 * 188.97540 * 21 12 11 24 24 C 1.36938 * 122.03910 * 238.62232 * 23 21 12 25 25 H 1.08003 * 120.00523 * 354.11528 * 24 23 21 26 26 C 1.38818 * 119.99782 * 174.11137 * 24 23 21 27 27 N 1.31611 * 120.00136 * 7.88241 * 26 24 23 28 28 Si 1.86798 * 119.99831 * 187.87579 * 26 24 23 29 29 H 1.48498 * 109.47138 * 94.98956 * 28 26 24 30 30 H 1.48500 * 109.47224 * 214.99132 * 28 26 24 31 31 H 1.48497 * 109.47414 * 334.99080 * 28 26 24 32 32 C 1.47572 * 115.92160 * 58.60640 * 23 21 12 33 33 H 1.09004 * 109.46419 * 60.00210 * 1 2 3 34 34 H 1.08995 * 109.46968 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47384 * 300.00567 * 1 2 3 36 36 H 1.08996 * 109.47384 * 239.99432 * 2 1 3 37 37 H 1.09004 * 109.46419 * 119.99790 * 2 1 3 38 38 H 1.08002 * 126.42343 * 0.02691 * 4 3 2 39 39 H 1.08007 * 125.82359 * 180.02562 * 5 4 3 40 40 H 1.09007 * 110.40723 * 100.66105 * 11 10 8 41 41 H 1.09002 * 110.41099 * 338.23409 * 11 10 8 42 42 H 1.08995 * 110.41347 * 21.58105 * 16 10 8 43 43 H 1.09004 * 110.51067 * 259.18539 * 16 10 8 44 44 H 1.09008 * 109.38348 * 299.08618 * 19 17 14 45 45 H 1.08993 * 109.38716 * 179.40945 * 19 17 14 46 46 H 1.09009 * 109.44497 * 240.79619 * 20 19 17 47 47 H 1.09003 * 109.41905 * 120.87822 * 20 19 17 48 48 H 0.96994 * 120.00474 * 180.02562 * 27 26 24 49 49 H 1.08999 * 109.99738 * 241.01065 * 32 23 21 50 50 H 1.08999 * 110.07469 * 119.66784 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3761 2.1077 -1.0851 5 6 2.7652 3.3274 -0.6393 6 7 2.6437 3.3475 0.6860 7 6 2.1980 2.1786 1.0952 8 6 1.9323 1.7974 2.4942 9 8 1.5146 0.6849 2.7522 10 7 2.1524 2.6818 3.4871 11 6 2.6540 4.0709 3.3721 12 6 3.6124 4.2396 4.5703 13 1 3.5570 5.2457 4.9859 14 6 3.1507 3.1917 5.6026 15 1 2.8650 3.6695 6.5398 16 6 1.9464 2.4854 4.9411 17 6 4.2638 2.1669 5.8316 18 1 3.9436 1.4209 6.5590 19 6 4.5964 1.4815 4.5040 20 6 5.0468 2.5211 3.4770 21 6 5.0394 3.9143 4.1173 22 1 5.3951 4.6624 3.4087 23 7 5.9011 3.8687 5.3154 24 6 6.9912 4.6852 5.4577 25 1 7.2992 5.3220 4.6416 26 6 7.7004 4.6943 6.6510 27 7 7.4242 3.8118 7.5875 28 14 9.0469 5.9592 6.9275 29 1 8.4890 7.1238 7.6607 30 1 10.1417 5.3504 7.7250 31 1 9.5804 6.4089 5.6167 32 6 5.5157 2.8899 6.3503 33 1 -0.3632 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3634 0.5139 0.8899 36 1 1.8934 -0.5139 -0.8899 37 1 1.8933 -0.5138 0.8901 38 1 2.3545 1.7778 -2.1133 39 1 3.1108 4.1447 -1.2550 40 1 1.8291 4.7800 3.4424 41 1 3.1920 4.2043 2.4335 42 1 1.9474 1.4232 5.1852 43 1 1.0120 2.9472 5.2602 44 1 3.7116 0.9650 4.1318 45 1 5.3964 0.7580 4.6609 46 1 4.3657 2.5092 2.6260 47 1 6.0550 2.2828 3.1382 48 1 7.9194 3.8184 8.4215 49 1 5.2889 3.4044 7.2840 50 1 6.3220 2.1732 6.5063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087354032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:48 Heat of formation + Delta-G solvation = 62.139417 kcal Electronic energy + Delta-G solvation = -32758.991330 eV Core-core repulsion = 28787.869258 eV Total energy + Delta-G solvation = -3971.122072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.30613 -42.19613 -39.69853 -37.23103 -35.93076 -34.82218 -33.29010 -32.26600 -31.56917 -31.24934 -30.44936 -28.72965 -26.97765 -25.94769 -24.76110 -23.66559 -23.38169 -22.48301 -22.33377 -21.84559 -20.31355 -19.16564 -18.31148 -18.03514 -17.76632 -17.36597 -16.71976 -16.54907 -16.26967 -16.02106 -15.71989 -15.46528 -15.21986 -14.73961 -14.61139 -14.39991 -14.20462 -14.06478 -13.89383 -13.59438 -13.44599 -13.36087 -13.03449 -12.97339 -12.83098 -12.78796 -12.65917 -12.51986 -12.35398 -12.19720 -12.06327 -12.03461 -11.75059 -11.32828 -11.20634 -10.92133 -10.82084 -10.77416 -10.70088 -10.45376 -9.79030 -9.38443 -8.79498 -7.73362 -5.10010 0.38404 1.40045 1.47903 1.48961 1.57500 1.68850 2.19676 2.42385 2.53774 3.20600 3.36646 3.52539 3.68426 3.76390 3.81612 3.84017 3.87895 4.06744 4.17207 4.27532 4.29477 4.36047 4.38457 4.42479 4.44742 4.52557 4.60922 4.67824 4.70439 4.74112 4.81512 4.86982 4.89436 4.96277 4.99846 5.03010 5.13384 5.15608 5.17911 5.27804 5.34133 5.45789 5.49668 5.57070 5.62450 5.77700 5.79541 5.91265 5.98811 6.31448 6.45479 6.76828 7.10992 7.21416 7.92102 8.43901 9.30439 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.003442 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.229959 B = 8132.187694 C = 8763.442639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 N -0.415 5.415 4 C -0.009 4.009 5 C -0.049 4.049 6 N -0.458 5.458 7 C 0.110 3.890 8 C 0.621 3.379 9 O -0.571 6.571 10 N -0.591 5.591 11 C 0.108 3.892 12 C -0.103 4.103 13 H 0.085 0.915 14 C -0.078 4.078 15 H 0.092 0.908 16 C 0.119 3.881 17 C -0.102 4.102 18 H 0.074 0.926 19 C -0.091 4.091 20 C -0.116 4.116 21 C 0.179 3.821 22 H 0.062 0.938 23 N -0.615 5.615 24 C -0.242 4.242 25 H 0.077 0.923 26 C -0.064 4.064 27 N -0.949 5.949 28 Si 0.969 3.031 29 H -0.287 1.287 30 H -0.300 1.300 31 H -0.271 1.271 32 C 0.218 3.782 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.226 0.774 39 H 0.200 0.800 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.067 0.933 47 H 0.026 0.974 48 H 0.243 0.757 49 H 0.020 0.980 50 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 -4.943 -18.093 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.095 5.095 4 C -0.148 4.148 5 C -0.202 4.202 6 N -0.180 5.180 7 C -0.148 4.148 8 C 0.409 3.591 9 O -0.451 6.451 10 N -0.322 5.322 11 C -0.015 4.015 12 C -0.124 4.124 13 H 0.103 0.897 14 C -0.097 4.097 15 H 0.110 0.890 16 C -0.002 4.002 17 C -0.121 4.121 18 H 0.092 0.908 19 C -0.129 4.129 20 C -0.155 4.155 21 C 0.072 3.928 22 H 0.080 0.920 23 N -0.339 5.339 24 C -0.371 4.371 25 H 0.095 0.905 26 C -0.257 4.257 27 N -0.599 5.599 28 Si 0.799 3.201 29 H -0.215 1.215 30 H -0.227 1.227 31 H -0.196 1.196 32 C 0.094 3.906 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.242 0.758 39 H 0.217 0.783 40 H 0.104 0.896 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.052 0.948 49 H 0.038 0.962 50 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -16.415 -5.146 -17.301 24.398 hybrid contribution 1.222 -0.132 0.259 1.256 sum -15.193 -5.278 -17.042 23.433 Atomic orbital electron populations 1.21995 0.92960 1.04193 1.01975 1.22282 0.96763 0.77979 1.05941 1.45493 1.44654 1.13445 1.05948 1.23626 1.03941 0.93067 0.94137 1.23049 1.07541 0.99136 0.90508 1.70147 1.15179 1.18797 1.13894 1.22307 1.12898 0.89493 0.90069 1.16127 0.77713 0.83170 0.82101 1.90753 1.49446 1.21063 1.83883 1.48514 1.62587 1.14539 1.06522 1.22822 0.97244 0.80994 1.00450 1.22580 0.95262 0.99220 0.95324 0.89668 1.21967 0.93697 0.95308 0.98707 0.89005 1.22494 0.98111 1.01559 0.78072 1.21712 0.96380 0.97292 0.96691 0.90753 1.21281 0.99197 0.96960 0.95483 1.21924 0.98803 0.96856 0.97934 1.20715 0.89721 0.94466 0.87851 0.92012 1.44851 1.28972 1.42219 1.17891 1.19650 1.04184 1.15391 0.97923 0.90522 1.25547 1.02448 1.00971 0.96713 1.70277 1.44684 1.37284 1.07609 0.85185 0.78474 0.78823 0.77639 1.21462 1.22716 1.19562 1.20642 0.91002 0.89311 0.89656 0.91006 0.88652 0.94426 0.85421 0.89609 0.75796 0.78292 0.89553 0.87008 0.90470 0.88536 0.92386 0.94985 0.91435 0.95490 0.94752 0.96163 0.98061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.23 71.98 0.74 -1.46 16 2 C 0.09 1.46 6.18 86.38 0.53 1.99 16 3 N -0.41 -8.56 2.76 -516.43 -1.42 -9.98 16 4 C -0.01 -0.13 11.53 83.52 0.96 0.83 16 5 C -0.05 -0.95 11.85 83.88 0.99 0.04 16 6 N -0.46 -12.15 8.18 -189.52 -1.55 -13.70 16 7 C 0.11 3.01 7.04 136.28 0.96 3.97 16 8 C 0.62 19.14 5.98 86.66 0.52 19.66 16 9 O -0.57 -19.19 14.57 -4.03 -0.06 -19.25 16 10 N -0.59 -17.31 1.73 -811.67 -1.40 -18.71 16 11 C 0.11 3.05 5.41 86.52 0.47 3.52 16 12 C -0.10 -3.47 3.38 -9.87 -0.03 -3.50 16 13 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 14 C -0.08 -2.53 3.19 -9.88 -0.03 -2.56 16 15 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 16 C 0.12 3.31 5.81 86.57 0.50 3.81 16 17 C -0.10 -3.97 2.71 -10.57 -0.03 -4.00 16 18 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 19 C -0.09 -3.55 5.07 30.59 0.16 -3.40 16 20 C -0.12 -4.56 5.29 30.68 0.16 -4.40 16 21 C 0.18 7.37 3.02 44.95 0.14 7.51 16 22 H 0.06 2.57 8.02 -2.38 -0.02 2.55 16 23 N -0.62 -31.36 2.87 -670.43 -1.93 -33.28 16 24 C -0.24 -13.56 9.97 84.03 0.84 -12.72 16 25 H 0.08 4.15 7.82 -2.91 -0.02 4.13 16 26 C -0.06 -3.68 5.46 84.86 0.46 -3.22 16 27 N -0.95 -57.46 9.82 21.65 0.21 -57.25 16 28 Si 0.97 46.46 29.56 68.60 2.03 48.49 16 29 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 30 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 31 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 32 C 0.22 11.04 4.37 86.37 0.38 11.42 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.04 0.78 7.85 -2.39 -0.02 0.76 16 36 H 0.13 1.08 8.13 -2.39 -0.02 1.06 16 37 H 0.09 1.83 6.64 -2.39 -0.02 1.82 16 38 H 0.23 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.11 3.37 4.59 -2.39 -0.01 3.36 16 42 H 0.08 2.25 7.03 -2.39 -0.02 2.24 16 43 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.06 2.15 5.15 -2.38 -0.01 2.13 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 2.46 4.53 -2.38 -0.01 2.45 16 47 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 49 H 0.02 1.13 7.14 -2.39 -0.02 1.12 16 50 H 0.00 0.07 7.35 -2.39 -0.02 0.05 16 Total: -1.00 -73.16 369.22 4.54 -68.63 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.95 Total: 17.58 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 7.71 Total: 17.48 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -6.09 Total: -132.92 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.16 4.54 -68.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087354032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.765 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds