Wall clock time and date at job start Wed Apr 1 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46955 * 2 1 4 4 C 1.35405 * 126.43968 * 264.99630 * 3 2 1 5 5 C 1.35565 * 107.15794 * 180.02562 * 4 3 2 6 6 N 1.33095 * 108.35232 * 359.77690 * 5 4 3 7 7 C 1.31620 * 109.09775 * 0.37009 * 6 5 4 8 8 C 1.47403 * 125.86676 * 179.89208 * 7 6 5 9 9 O 1.21600 * 120.00067 * 179.69437 * 8 7 6 10 10 N 1.34781 * 119.99922 * 359.69094 * 8 7 6 11 11 C 1.49636 * 125.93946 * 179.97438 * 10 8 7 12 12 C 1.51665 * 102.80151 * 155.13532 * 11 10 8 13 13 H 1.08998 * 109.81367 * 287.50588 * 12 11 10 14 14 C 1.57281 * 99.01609 * 42.64626 * 12 11 10 15 15 H 1.08996 * 104.38958 * 63.08939 * 14 12 11 16 16 C 1.48548 * 102.22939 * 313.69262 * 14 12 11 17 17 C 1.49810 * 106.57790 * 174.89890 * 14 12 11 18 18 H 1.09001 * 114.28691 * 154.23107 * 17 14 12 19 19 C 1.55172 * 108.68528 * 25.34480 * 17 14 12 20 20 C 1.53826 * 108.78309 * 287.94673 * 19 17 14 21 21 C 1.51675 * 122.43731 * 156.51818 * 12 11 10 22 22 H 1.09004 * 113.12031 * 42.70511 * 21 12 11 23 23 C 1.55531 * 108.41058 * 275.39813 * 21 12 11 24 24 N 1.48930 * 106.13445 * 287.61348 * 23 21 12 25 25 C 1.36940 * 123.94260 * 217.65472 * 24 23 21 26 26 H 1.07995 * 120.00028 * 159.79588 * 25 24 23 27 27 C 1.38807 * 119.99707 * 340.07692 * 25 24 23 28 28 N 1.31617 * 119.99974 * 349.49521 * 27 25 24 29 29 Si 1.86798 * 119.99910 * 169.49488 * 27 25 24 30 30 H 1.48506 * 109.46933 * 60.00063 * 29 27 25 31 31 H 1.48503 * 109.47056 * 179.97438 * 29 27 25 32 32 H 1.48502 * 109.47275 * 299.99880 * 29 27 25 33 33 H 1.09002 * 109.47267 * 300.00166 * 1 2 3 34 34 H 1.09000 * 109.46815 * 60.00230 * 1 2 3 35 35 H 1.08997 * 109.47063 * 179.97438 * 1 2 3 36 36 H 1.08993 * 109.47613 * 240.00323 * 2 1 3 37 37 H 1.08998 * 109.47260 * 119.99502 * 2 1 3 38 38 H 1.07994 * 126.41594 * 359.97438 * 4 3 2 39 39 H 1.08000 * 125.81876 * 179.97438 * 5 4 3 40 40 H 1.08998 * 110.74580 * 36.80267 * 11 10 8 41 41 H 1.09006 * 110.90077 * 273.53075 * 11 10 8 42 42 H 1.09000 * 110.34293 * 272.68632 * 16 14 12 43 43 H 1.09002 * 110.08125 * 150.61945 * 16 14 12 44 44 H 1.09003 * 109.58386 * 47.73449 * 19 17 14 45 45 H 1.09002 * 109.58754 * 168.15338 * 19 17 14 46 46 H 1.09003 * 109.90535 * 155.03649 * 20 19 17 47 47 H 1.09002 * 109.90025 * 276.16387 * 20 19 17 48 48 H 1.08998 * 109.57924 * 168.79893 * 23 21 12 49 49 H 1.09000 * 110.79204 * 47.07564 * 23 21 12 50 50 H 0.97004 * 120.00256 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3760 2.1079 -1.0852 5 6 2.7662 3.3272 -0.6392 6 7 2.6453 3.3470 0.6861 7 6 2.1990 2.1784 1.0954 8 6 1.9337 1.7969 2.4943 9 8 1.5154 0.6846 2.7523 10 7 2.1548 2.6809 3.4874 11 6 1.9318 2.4363 4.9467 12 6 2.8823 3.4202 5.6014 13 1 3.9102 3.0796 5.4769 14 6 2.6152 4.6691 4.6834 15 1 1.5654 4.9093 4.8516 16 6 2.6651 4.0757 3.3225 17 6 3.3954 5.8055 5.2700 18 1 3.6713 6.5778 4.5520 19 6 4.5905 5.2261 6.0725 20 6 4.0545 4.5780 7.3605 21 6 2.6777 3.9315 7.0146 22 1 2.3795 3.1500 7.7136 23 6 1.6976 5.1380 6.9635 24 7 2.4622 6.2673 6.3651 25 6 2.3382 7.5712 6.7645 26 1 3.1211 8.2810 6.5417 27 6 1.2090 7.9794 7.4610 28 7 0.1704 7.1769 7.5588 29 14 1.1635 9.6675 8.2595 30 1 1.3403 10.7121 7.2188 31 1 -0.1442 9.8599 8.9362 32 1 2.2581 9.7727 9.2575 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8934 -0.5137 -0.8899 37 1 1.8934 -0.5137 0.8900 38 1 2.3551 1.7776 -2.1131 39 1 3.1128 4.1441 -1.2547 40 1 2.1940 1.4119 5.2109 41 1 0.9002 2.6532 5.2241 42 1 3.6899 4.0643 2.9514 43 1 2.0225 4.6382 2.6452 44 1 5.1041 4.4752 5.4720 45 1 5.2826 6.0286 6.3279 46 1 4.7479 3.8113 7.7065 47 1 3.9247 5.3373 8.1317 48 1 1.3812 5.3947 7.9744 49 1 0.8296 4.9055 6.3464 50 1 -0.6186 7.4619 8.0459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087354033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:52 Heat of formation + Delta-G solvation = 91.210248 kcal Electronic energy + Delta-G solvation = -31760.057731 eV Core-core repulsion = 27790.196265 eV Total energy + Delta-G solvation = -3969.861466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.28917 -42.38084 -40.02112 -37.46504 -35.94356 -34.91367 -32.70968 -32.09475 -31.37435 -31.21751 -30.42500 -29.02239 -27.40098 -25.73088 -24.74537 -23.49825 -23.31890 -22.56790 -22.08596 -21.73236 -20.28885 -18.98342 -18.52302 -18.22292 -17.59487 -17.21916 -16.86666 -16.75980 -16.18074 -15.90020 -15.87442 -15.61041 -15.45593 -14.79447 -14.70080 -14.51371 -14.31878 -14.14776 -13.72164 -13.65437 -13.57439 -13.12481 -13.01770 -12.90569 -12.83423 -12.61546 -12.55518 -12.43266 -12.30436 -12.13430 -12.07674 -11.90448 -11.79018 -11.37524 -11.11276 -11.04786 -10.82790 -10.77585 -10.59309 -10.37276 -9.88027 -9.45033 -8.65248 -7.79008 -5.16547 0.33139 1.30723 1.48099 1.49736 1.55881 1.64724 2.06831 2.36975 2.52634 3.03324 3.32703 3.36823 3.46797 3.72133 3.75219 3.83260 3.96904 4.04172 4.15998 4.29044 4.33234 4.34528 4.40720 4.45199 4.49035 4.50136 4.51171 4.63957 4.71479 4.76964 4.79382 4.86537 4.88890 4.93720 4.97135 5.04672 5.10561 5.12735 5.27278 5.29851 5.35453 5.46277 5.54117 5.58158 5.69842 5.72849 5.74850 5.85753 5.95080 6.28189 6.32306 6.70945 7.04381 7.14586 7.81255 8.49771 9.29264 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.002937 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.185311 B = 9532.228705 C = 9835.309296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.414 5.414 4 C -0.004 4.004 5 C -0.051 4.051 6 N -0.461 5.461 7 C 0.104 3.896 8 C 0.614 3.386 9 O -0.570 6.570 10 N -0.603 5.603 11 C 0.128 3.872 12 C -0.092 4.092 13 H 0.097 0.903 14 C -0.133 4.133 15 H 0.048 0.952 16 C 0.162 3.838 17 C 0.177 3.823 18 H 0.079 0.921 19 C -0.114 4.114 20 C -0.087 4.087 21 C -0.095 4.095 22 H 0.096 0.904 23 C 0.194 3.806 24 N -0.616 5.616 25 C -0.234 4.234 26 H 0.072 0.928 27 C -0.061 4.061 28 N -0.946 5.946 29 Si 0.966 3.034 30 H -0.279 1.279 31 H -0.300 1.300 32 H -0.279 1.279 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.229 0.771 39 H 0.201 0.799 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.039 0.961 49 H -0.005 1.005 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 -15.248 -17.132 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.095 5.095 4 C -0.143 4.143 5 C -0.205 4.205 6 N -0.183 5.183 7 C -0.153 4.153 8 C 0.402 3.598 9 O -0.450 6.450 10 N -0.335 5.335 11 C 0.007 3.993 12 C -0.111 4.111 13 H 0.115 0.885 14 C -0.153 4.153 15 H 0.067 0.933 16 C 0.040 3.960 17 C 0.072 3.928 18 H 0.097 0.903 19 C -0.153 4.153 20 C -0.125 4.125 21 C -0.115 4.115 22 H 0.114 0.886 23 C 0.070 3.930 24 N -0.342 5.342 25 C -0.364 4.364 26 H 0.090 0.910 27 C -0.255 4.255 28 N -0.594 5.594 29 Si 0.795 3.205 30 H -0.205 1.205 31 H -0.226 1.226 32 H -0.206 1.206 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.108 0.892 38 H 0.246 0.754 39 H 0.218 0.782 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.012 0.988 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.009 -15.318 -16.348 23.474 hybrid contribution -1.086 0.773 0.199 1.348 sum 5.923 -14.545 -16.149 22.526 Atomic orbital electron populations 1.22023 0.93544 1.04235 1.01695 1.22294 0.96315 0.77850 1.06274 1.45529 1.44578 1.13541 1.05829 1.23675 1.03497 0.93011 0.94150 1.23064 1.07831 0.99201 0.90380 1.70305 1.15085 1.18614 1.14294 1.22224 1.13431 0.89605 0.90038 1.16305 0.77736 0.83433 0.82345 1.90741 1.49088 1.21228 1.83963 1.49418 1.63272 1.14237 1.06557 1.21779 0.99316 1.00310 0.77919 1.22230 0.99812 0.93886 0.95141 0.88508 1.21834 1.02247 0.96672 0.94573 0.93337 1.20665 1.00063 0.79817 0.95484 1.21160 0.90047 0.92565 0.88984 0.90279 1.22500 0.96981 0.99367 0.96454 1.21966 0.94803 0.98397 0.97286 1.22373 0.97578 0.96691 0.94900 0.88552 1.21255 0.90526 0.85326 0.95914 1.46270 1.47912 1.02680 1.37308 1.19404 1.00191 0.86919 1.29896 0.90980 1.25639 0.95110 1.01016 1.03707 1.70133 1.04769 1.37774 1.46735 0.85344 0.76115 0.80557 0.78454 1.20480 1.22626 1.20569 0.95038 0.91165 0.88391 0.84868 0.89248 0.75449 0.78243 0.89072 0.92323 0.89990 0.91562 0.90679 0.92772 0.90861 0.94126 0.94274 0.98758 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.23 71.98 0.74 -1.74 16 2 C 0.09 1.45 6.18 86.38 0.53 1.99 16 3 N -0.41 -8.63 2.76 -516.44 -1.42 -10.05 16 4 C 0.00 -0.06 11.53 83.52 0.96 0.90 16 5 C -0.05 -1.02 11.85 83.88 0.99 -0.03 16 6 N -0.46 -12.99 8.76 -189.53 -1.66 -14.65 16 7 C 0.10 2.99 7.66 136.27 1.04 4.04 16 8 C 0.61 20.21 7.87 86.66 0.68 20.89 16 9 O -0.57 -19.93 14.83 -4.03 -0.06 -19.99 16 10 N -0.60 -19.72 3.43 -820.32 -2.82 -22.53 16 11 C 0.13 4.04 6.67 85.33 0.57 4.61 16 12 C -0.09 -2.89 2.30 -10.16 -0.02 -2.91 16 13 H 0.10 2.72 6.26 -2.39 -0.01 2.71 16 14 C -0.13 -4.79 2.28 -11.72 -0.03 -4.82 16 15 H 0.05 2.19 5.19 -2.39 -0.01 2.17 16 16 C 0.16 5.24 5.36 84.40 0.45 5.70 16 17 C 0.18 6.85 4.66 43.80 0.20 7.06 16 18 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 19 C -0.11 -3.69 5.57 31.62 0.18 -3.51 16 20 C -0.09 -2.90 5.49 31.91 0.18 -2.73 16 21 C -0.10 -3.36 4.24 -9.32 -0.04 -3.40 16 22 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 23 C 0.19 9.24 4.11 86.78 0.36 9.60 16 24 N -0.62 -30.02 2.13 -656.99 -1.40 -31.41 16 25 C -0.23 -12.77 10.11 84.03 0.85 -11.92 16 26 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 27 C -0.06 -3.44 5.26 84.86 0.45 -2.99 16 28 N -0.95 -56.83 10.86 21.65 0.24 -56.60 16 29 Si 0.97 45.88 29.57 68.60 2.03 47.90 16 30 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 31 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 32 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 33 H 0.03 0.73 7.85 -2.39 -0.02 0.72 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.13 0.94 8.13 -2.39 -0.02 0.92 16 37 H 0.09 1.79 6.64 -2.39 -0.02 1.78 16 38 H 0.23 1.03 8.06 -2.91 -0.02 1.00 16 39 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.09 2.63 8.09 -2.39 -0.02 2.62 16 41 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.08 2.47 8.00 -2.39 -0.02 2.45 16 43 H 0.07 2.34 7.49 -2.39 -0.02 2.32 16 44 H 0.07 2.02 6.83 -2.39 -0.02 2.01 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.04 1.62 7.73 -2.39 -0.02 1.60 16 48 H 0.04 2.14 6.68 -2.39 -0.02 2.12 16 49 H -0.01 -0.29 6.65 -2.39 -0.02 -0.30 16 50 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -72.53 379.86 3.94 -68.59 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.94 Total: 18.02 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 8.09 Total: 20.72 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -7.06 Total: -135.24 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.53 3.94 -68.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087354033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.799 kcal (2) G-P(sol) polarization free energy of solvation -72.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds