Wall clock time and date at job start Wed Apr 1 2020 03:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46952 * 2 1 4 4 C 1.35847 * 126.13372 * 90.02758 * 3 2 1 5 5 N 1.30171 * 109.00245 * 179.97438 * 4 3 2 6 6 C 1.35757 * 108.86631 * 359.97438 * 5 4 3 7 7 C 1.47327 * 126.23573 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00178 * 180.02562 * 7 6 5 9 9 N 1.34786 * 119.99887 * 0.02645 * 7 6 5 10 10 C 1.48161 * 127.83697 * 359.95493 * 9 7 6 11 11 C 1.54583 * 104.84551 * 139.91618 * 10 9 7 12 12 H 1.08998 * 111.93829 * 263.70225 * 11 10 9 13 13 C 1.55266 * 104.36426 * 24.66372 * 11 10 9 14 14 H 1.08996 * 111.04873 * 239.12780 * 13 11 10 15 15 C 1.48139 * 127.83348 * 179.97438 * 9 7 6 16 16 C 1.53028 * 109.85645 * 116.17166 * 13 11 10 17 17 H 1.09001 * 109.63274 * 180.25900 * 16 13 11 18 18 C 1.53040 * 109.21412 * 300.40092 * 16 13 11 19 19 C 1.52931 * 110.01666 * 59.32924 * 18 16 13 20 20 C 1.53230 * 108.90025 * 140.75907 * 11 10 9 21 21 H 1.08999 * 110.49628 * 68.61606 * 20 11 10 22 22 N 1.47696 * 108.05155 * 189.62113 * 20 11 10 23 23 C 1.36943 * 122.06736 * 239.29058 * 22 20 11 24 24 H 1.08002 * 119.99788 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99622 * 180.27816 * 23 22 20 26 26 N 1.31614 * 120.00467 * 359.72375 * 25 23 22 27 27 Si 1.86801 * 119.99700 * 179.72266 * 25 23 22 28 28 H 1.48501 * 109.46896 * 89.99850 * 27 25 23 29 29 H 1.48499 * 109.47039 * 210.00011 * 27 25 23 30 30 H 1.48501 * 109.47275 * 329.99811 * 27 25 23 31 31 C 1.47637 * 115.86361 * 59.56263 * 22 20 11 32 32 C 1.35377 * 126.13898 * 270.30911 * 3 2 1 33 33 H 1.09000 * 109.47095 * 60.00170 * 1 2 3 34 34 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46888 * 299.99975 * 1 2 3 36 36 H 1.09002 * 109.46888 * 240.00025 * 2 1 3 37 37 H 1.08997 * 109.46729 * 120.00170 * 2 1 3 38 38 H 1.08005 * 125.50195 * 359.96485 * 4 3 2 39 39 H 1.09003 * 110.42220 * 259.11349 * 10 9 7 40 40 H 1.09011 * 110.42047 * 21.45822 * 10 9 7 41 41 H 1.09007 * 110.39249 * 100.57813 * 15 9 7 42 42 H 1.09000 * 110.49570 * 338.22177 * 15 9 7 43 43 H 1.08995 * 109.38615 * 299.15645 * 18 16 13 44 44 H 1.09004 * 109.37599 * 179.49292 * 18 16 13 45 45 H 1.08999 * 109.45247 * 240.65935 * 19 18 16 46 46 H 1.08994 * 109.45836 * 120.72742 * 19 18 16 47 47 H 0.96995 * 120.00147 * 180.02562 * 26 25 23 48 48 H 1.08994 * 109.99755 * 119.21098 * 31 22 20 49 49 H 1.08999 * 109.99522 * 240.59399 * 31 22 20 50 50 H 1.08004 * 126.56340 * 0.02562 * 32 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1362 1.0972 5 7 2.7008 3.3089 0.7137 6 6 2.7148 3.3476 -0.6432 7 6 3.1194 4.4924 -1.4777 8 8 3.0874 4.4025 -2.6902 9 7 3.5250 5.6393 -0.8974 10 6 3.6299 5.9380 0.5500 11 6 4.9377 6.7496 0.6932 12 1 5.7793 6.1186 0.9789 13 6 5.1491 7.3894 -0.7057 14 1 6.1007 7.0802 -1.1378 15 6 3.9667 6.8873 -1.5623 16 6 5.0705 8.9138 -0.5972 17 1 5.2148 9.3589 -1.5817 18 6 3.6972 9.3097 -0.0501 19 6 3.4802 8.6787 1.3260 20 6 4.7191 7.8660 1.7197 21 1 4.5993 7.4474 2.7190 22 7 5.8890 8.7663 1.6729 23 6 6.6759 8.9937 2.7704 24 1 6.4483 8.5082 3.7079 25 6 7.7622 9.8531 2.6794 26 7 8.0392 10.4451 1.5370 27 14 8.8309 10.1693 4.1785 28 1 9.9352 9.1772 4.2172 29 1 9.3987 11.5393 4.1014 30 1 8.0084 10.0429 5.4084 31 6 6.1540 9.4107 0.3713 32 6 2.2789 2.1359 -1.0933 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 2.1724 1.8154 2.1222 39 1 2.7740 6.5270 0.8798 40 1 3.6991 5.0144 1.1249 41 1 3.1611 7.6216 -1.5654 42 1 4.2959 6.6812 -2.5807 43 1 2.9219 8.9630 -0.7333 44 1 3.6416 10.3948 0.0367 45 1 2.6111 8.0218 1.2911 46 1 3.3118 9.4639 2.0629 47 1 8.7984 11.0453 1.4734 48 1 6.0973 10.4943 0.4734 49 1 7.1391 9.1208 0.0055 50 1 2.1662 1.8351 -2.1244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087405606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:17 Heat of formation + Delta-G solvation = 76.538950 kcal Electronic energy + Delta-G solvation = -31339.673442 eV Core-core repulsion = 27369.175781 eV Total energy + Delta-G solvation = -3970.497661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.37672 -40.49939 -38.47922 -35.57055 -35.33318 -33.10860 -31.61194 -30.80146 -30.26245 -29.80673 -29.47384 -27.30266 -25.30170 -24.71149 -23.88567 -22.24188 -21.89182 -21.19136 -20.78631 -20.50792 -19.29943 -17.70105 -17.09451 -16.42218 -16.23591 -15.75012 -15.70483 -15.26144 -14.79743 -14.70894 -14.63612 -14.28317 -14.05706 -13.94885 -13.68106 -13.34947 -13.02804 -12.67989 -12.56000 -12.28711 -12.06897 -12.01977 -11.96056 -11.91674 -11.35842 -11.17241 -11.01583 -10.83714 -10.75119 -10.45092 -10.33192 -10.16828 -10.05264 -10.00438 -9.82882 -9.56596 -9.53290 -9.15957 -9.07459 -8.82768 -8.40906 -8.22589 -6.75140 -5.57736 -2.93950 1.50209 2.31746 2.34442 3.30099 3.44981 3.50186 3.51788 3.65654 4.09378 4.28960 4.37256 4.46963 4.55788 4.64162 4.86704 5.03408 5.06611 5.15015 5.19842 5.29452 5.37584 5.47175 5.49579 5.57787 5.67193 5.71080 5.82661 5.85734 5.90973 5.92659 6.02362 6.17646 6.23331 6.28198 6.35232 6.40336 6.44059 6.57447 6.61530 6.68811 6.81209 6.87368 6.90017 7.04773 7.09003 7.15127 7.62997 7.72451 7.80549 7.91533 7.99988 8.41213 8.44232 9.34794 9.96150 10.50851 11.47617 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002779 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.011770 B =10074.715955 C =10974.555581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 N -0.458 5.458 4 C 0.183 3.817 5 N -0.455 5.455 6 C -0.050 4.050 7 C 0.617 3.383 8 O -0.560 6.560 9 N -0.602 5.602 10 C 0.092 3.908 11 C -0.105 4.105 12 H 0.078 0.922 13 C -0.080 4.080 14 H 0.074 0.926 15 C 0.102 3.898 16 C -0.110 4.110 17 H 0.064 0.936 18 C -0.105 4.105 19 C -0.133 4.133 20 C 0.181 3.819 21 H 0.066 0.934 22 N -0.600 5.600 23 C -0.230 4.230 24 H 0.074 0.926 25 C -0.010 4.010 26 N -0.924 5.924 27 Si 0.907 3.093 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 C 0.204 3.796 32 C 0.029 3.971 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.210 0.790 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.249 0.751 48 H 0.050 0.950 49 H 0.048 0.952 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 -19.547 -3.288 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.141 5.141 4 C -0.100 4.100 5 N -0.174 5.174 6 C -0.179 4.179 7 C 0.406 3.594 8 O -0.439 6.439 9 N -0.332 5.332 10 C -0.031 4.031 11 C -0.126 4.126 12 H 0.097 0.903 13 C -0.099 4.099 14 H 0.092 0.908 15 C -0.020 4.020 16 C -0.129 4.129 17 H 0.082 0.918 18 C -0.143 4.143 19 C -0.172 4.172 20 C 0.072 3.928 21 H 0.084 0.916 22 N -0.324 5.324 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.206 4.206 26 N -0.572 5.572 27 Si 0.739 3.261 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 C 0.080 3.920 32 C -0.109 4.109 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.226 0.774 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.339 -18.999 -3.441 24.660 hybrid contribution 0.432 -0.475 0.341 0.727 sum -14.907 -19.475 -3.099 24.720 Atomic orbital electron populations 1.22185 0.93820 1.03368 1.03544 1.21946 0.95830 0.79465 1.05078 1.45534 1.48706 1.13006 1.06865 1.25277 1.03525 0.87624 0.93608 1.70663 1.17558 1.18738 1.10418 1.20523 1.11562 0.95372 0.90466 1.16474 0.76884 0.80253 0.85813 1.90766 1.57001 1.82755 1.13393 1.48730 1.63265 1.11837 1.09408 1.23135 0.97995 1.01476 0.80489 1.22912 0.96343 0.97229 0.96108 0.90320 1.22128 0.96927 0.95905 0.94966 0.90802 1.22722 0.97319 0.84784 0.97158 1.21802 0.97444 0.93699 0.99977 0.91755 1.21477 0.96408 0.99964 0.96408 1.22158 0.98405 0.99574 0.97080 1.20499 0.87488 0.89126 0.95645 0.91564 1.44623 1.28770 1.50486 1.08503 1.19283 1.05462 1.21735 0.89438 0.90793 1.24773 0.98952 0.99812 0.97042 1.70026 1.30044 1.34000 1.23146 0.86182 0.80619 0.77164 0.82173 1.21824 1.21876 1.20855 1.21077 0.92880 0.96028 0.82024 1.22514 1.03422 0.91856 0.93146 0.91658 0.90359 0.91567 0.88756 0.88409 0.77373 0.90682 0.87628 0.90431 0.90864 0.93282 0.92622 0.92843 0.92296 0.93978 0.93144 0.93359 0.79769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.24 37.16 0.38 -0.16 16 2 C 0.10 0.35 6.84 -4.04 -0.03 0.32 16 3 N -0.46 -3.60 2.72 -118.36 -0.32 -3.92 16 4 C 0.18 1.67 12.55 -89.91 -1.13 0.54 16 5 N -0.46 -6.01 8.33 -11.03 -0.09 -6.11 16 6 C -0.05 -0.72 6.85 -83.09 -0.57 -1.29 16 7 C 0.62 10.61 7.91 -12.56 -0.10 10.51 16 8 O -0.56 -10.80 17.15 5.26 0.09 -10.71 16 9 N -0.60 -10.13 3.32 -170.46 -0.57 -10.69 16 10 C 0.09 1.47 5.94 -2.30 -0.01 1.46 16 11 C -0.10 -1.92 3.47 -88.47 -0.31 -2.22 16 12 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 13 C -0.08 -1.44 3.14 -88.67 -0.28 -1.72 16 14 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.10 1.69 6.34 -2.41 -0.02 1.67 16 16 C -0.11 -2.09 2.86 -90.28 -0.26 -2.34 16 17 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.11 -1.83 5.30 -26.75 -0.14 -1.97 16 19 C -0.13 -2.36 5.52 -26.60 -0.15 -2.51 16 20 C 0.18 3.62 3.16 -66.99 -0.21 3.41 16 21 H 0.07 1.32 7.99 -51.93 -0.42 0.90 16 22 N -0.60 -14.76 2.87 -163.17 -0.47 -15.23 16 23 C -0.23 -6.28 9.99 -15.06 -0.15 -6.43 16 24 H 0.07 1.96 7.79 -52.49 -0.41 1.55 16 25 C -0.01 -0.29 5.47 -17.43 -0.10 -0.38 16 26 N -0.92 -26.94 9.77 55.49 0.54 -26.40 16 27 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 31 C 0.20 4.92 4.37 -3.11 -0.01 4.91 16 32 C 0.03 0.32 11.26 -16.65 -0.19 0.13 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.21 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.08 1.18 5.21 -51.93 -0.27 0.90 16 40 H 0.11 1.70 5.44 -51.92 -0.28 1.41 16 41 H 0.08 1.22 5.31 -51.92 -0.28 0.95 16 42 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 43 H 0.05 0.76 5.79 -51.93 -0.30 0.46 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.83 5.67 -51.93 -0.29 0.54 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.05 1.36 7.23 -51.93 -0.38 0.99 16 49 H 0.05 1.31 7.23 -51.93 -0.38 0.93 16 50 H 0.19 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -33.96 377.65 -11.03 -44.99 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.62 Total: 1.28 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -3.26 Total: 3.92 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.91 Total: -62.35 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.96 -11.03 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087405606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.530 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds