Wall clock time and date at job start Wed Apr 1 2020 03:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46952 * 2 1 4 4 C 1.35847 * 126.13372 * 90.02758 * 3 2 1 5 5 N 1.30171 * 109.00245 * 179.97438 * 4 3 2 6 6 C 1.35757 * 108.86631 * 359.97438 * 5 4 3 7 7 C 1.47327 * 126.23573 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00178 * 180.02562 * 7 6 5 9 9 N 1.34786 * 119.99887 * 0.02645 * 7 6 5 10 10 C 1.48161 * 127.83697 * 359.95493 * 9 7 6 11 11 C 1.54583 * 104.84551 * 139.91618 * 10 9 7 12 12 H 1.08998 * 111.93829 * 263.70225 * 11 10 9 13 13 C 1.55266 * 104.36426 * 24.66372 * 11 10 9 14 14 H 1.08996 * 111.04873 * 239.12780 * 13 11 10 15 15 C 1.48139 * 127.83348 * 179.97438 * 9 7 6 16 16 C 1.53028 * 109.85645 * 116.17166 * 13 11 10 17 17 H 1.09001 * 109.63274 * 180.25900 * 16 13 11 18 18 C 1.53040 * 109.21412 * 300.40092 * 16 13 11 19 19 C 1.52931 * 110.01666 * 59.32924 * 18 16 13 20 20 C 1.53230 * 108.90025 * 140.75907 * 11 10 9 21 21 H 1.08999 * 110.49628 * 68.61606 * 20 11 10 22 22 N 1.47696 * 108.05155 * 189.62113 * 20 11 10 23 23 C 1.36943 * 122.06736 * 239.29058 * 22 20 11 24 24 H 1.08002 * 119.99788 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99622 * 180.27816 * 23 22 20 26 26 N 1.31614 * 120.00467 * 359.72375 * 25 23 22 27 27 Si 1.86801 * 119.99700 * 179.72266 * 25 23 22 28 28 H 1.48501 * 109.46896 * 89.99850 * 27 25 23 29 29 H 1.48499 * 109.47039 * 210.00011 * 27 25 23 30 30 H 1.48501 * 109.47275 * 329.99811 * 27 25 23 31 31 C 1.47637 * 115.86361 * 59.56263 * 22 20 11 32 32 C 1.35377 * 126.13898 * 270.30911 * 3 2 1 33 33 H 1.09000 * 109.47095 * 60.00170 * 1 2 3 34 34 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46888 * 299.99975 * 1 2 3 36 36 H 1.09002 * 109.46888 * 240.00025 * 2 1 3 37 37 H 1.08997 * 109.46729 * 120.00170 * 2 1 3 38 38 H 1.08005 * 125.50195 * 359.96485 * 4 3 2 39 39 H 1.09003 * 110.42220 * 259.11349 * 10 9 7 40 40 H 1.09011 * 110.42047 * 21.45822 * 10 9 7 41 41 H 1.09007 * 110.39249 * 100.57813 * 15 9 7 42 42 H 1.09000 * 110.49570 * 338.22177 * 15 9 7 43 43 H 1.08995 * 109.38615 * 299.15645 * 18 16 13 44 44 H 1.09004 * 109.37599 * 179.49292 * 18 16 13 45 45 H 1.08999 * 109.45247 * 240.65935 * 19 18 16 46 46 H 1.08994 * 109.45836 * 120.72742 * 19 18 16 47 47 H 0.96995 * 120.00147 * 180.02562 * 26 25 23 48 48 H 1.08994 * 109.99755 * 119.21098 * 31 22 20 49 49 H 1.08999 * 109.99522 * 240.59399 * 31 22 20 50 50 H 1.08004 * 126.56340 * 0.02562 * 32 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1362 1.0972 5 7 2.7008 3.3089 0.7137 6 6 2.7148 3.3476 -0.6432 7 6 3.1194 4.4924 -1.4777 8 8 3.0874 4.4025 -2.6902 9 7 3.5250 5.6393 -0.8974 10 6 3.6299 5.9380 0.5500 11 6 4.9377 6.7496 0.6932 12 1 5.7793 6.1186 0.9789 13 6 5.1491 7.3894 -0.7057 14 1 6.1007 7.0802 -1.1378 15 6 3.9667 6.8873 -1.5623 16 6 5.0705 8.9138 -0.5972 17 1 5.2148 9.3589 -1.5817 18 6 3.6972 9.3097 -0.0501 19 6 3.4802 8.6787 1.3260 20 6 4.7191 7.8660 1.7197 21 1 4.5993 7.4474 2.7190 22 7 5.8890 8.7663 1.6729 23 6 6.6759 8.9937 2.7704 24 1 6.4483 8.5082 3.7079 25 6 7.7622 9.8531 2.6794 26 7 8.0392 10.4451 1.5370 27 14 8.8309 10.1693 4.1785 28 1 9.9352 9.1772 4.2172 29 1 9.3987 11.5393 4.1014 30 1 8.0084 10.0429 5.4084 31 6 6.1540 9.4107 0.3713 32 6 2.2789 2.1359 -1.0933 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 2.1724 1.8154 2.1222 39 1 2.7740 6.5270 0.8798 40 1 3.6991 5.0144 1.1249 41 1 3.1611 7.6216 -1.5654 42 1 4.2959 6.6812 -2.5807 43 1 2.9219 8.9630 -0.7333 44 1 3.6416 10.3948 0.0367 45 1 2.6111 8.0218 1.2911 46 1 3.3118 9.4639 2.0629 47 1 8.7984 11.0453 1.4734 48 1 6.0973 10.4943 0.4734 49 1 7.1391 9.1208 0.0055 50 1 2.1662 1.8351 -2.1244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087405606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:16 Heat of formation + Delta-G solvation = 57.743595 kcal Electronic energy + Delta-G solvation = -31340.488470 eV Core-core repulsion = 27369.175781 eV Total energy + Delta-G solvation = -3971.312689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.14730 -41.99560 -39.82909 -37.11242 -35.91088 -34.93781 -33.24435 -31.74810 -31.63840 -31.21535 -30.48279 -28.82497 -26.99408 -25.95588 -24.58497 -23.63469 -23.36161 -22.33426 -22.19019 -21.72731 -20.39539 -19.18380 -18.40050 -17.81755 -17.41840 -17.16622 -16.74641 -16.59319 -16.33880 -16.10082 -15.69165 -15.33194 -15.28751 -14.88691 -14.63836 -14.58391 -14.16032 -14.10569 -13.73832 -13.69528 -13.42590 -13.33501 -13.00808 -12.91839 -12.85950 -12.80808 -12.54386 -12.35395 -12.21147 -12.11405 -12.03747 -11.85760 -11.74031 -11.31451 -11.14995 -10.82650 -10.73756 -10.70663 -10.65190 -10.46190 -9.81166 -9.43454 -8.78677 -7.70516 -5.08439 0.58813 1.47712 1.48654 1.49019 1.57354 1.70914 2.12952 2.53511 2.55829 3.35962 3.41202 3.57740 3.67329 3.78315 3.83999 3.88125 3.93310 4.13342 4.15166 4.18067 4.29700 4.33755 4.37849 4.45017 4.46502 4.47846 4.62400 4.66950 4.71567 4.75147 4.83774 4.87428 4.94433 5.01497 5.04707 5.09082 5.17849 5.23143 5.26482 5.29623 5.40226 5.46591 5.54316 5.58151 5.61728 5.66512 5.82145 5.94119 6.19507 6.33189 6.60557 6.82935 7.21564 7.22872 7.94088 8.45105 9.32604 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002779 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.011770 B =10074.715955 C =10974.555581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.448 5.448 4 C 0.196 3.804 5 N -0.493 5.493 6 C -0.094 4.094 7 C 0.611 3.389 8 O -0.591 6.591 9 N -0.607 5.607 10 C 0.110 3.890 11 C -0.099 4.099 12 H 0.056 0.944 13 C -0.076 4.076 14 H 0.055 0.945 15 C 0.111 3.889 16 C -0.101 4.101 17 H 0.077 0.923 18 C -0.101 4.101 19 C -0.125 4.125 20 C 0.175 3.825 21 H 0.067 0.933 22 N -0.616 5.616 23 C -0.237 4.237 24 H 0.080 0.920 25 C -0.070 4.070 26 N -0.952 5.952 27 Si 0.970 3.030 28 H -0.291 1.291 29 H -0.299 1.299 30 H -0.269 1.269 31 C 0.217 3.783 32 C 0.044 3.956 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.248 0.752 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.242 0.758 48 H 0.015 0.985 49 H 0.006 0.994 50 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.253 -22.294 -2.309 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.129 5.129 4 C -0.088 4.088 5 N -0.212 5.212 6 C -0.221 4.221 7 C 0.402 3.598 8 O -0.473 6.473 9 N -0.337 5.337 10 C -0.012 4.012 11 C -0.120 4.120 12 H 0.074 0.926 13 C -0.096 4.096 14 H 0.073 0.927 15 C -0.011 4.011 16 C -0.120 4.120 17 H 0.096 0.904 18 C -0.138 4.138 19 C -0.164 4.164 20 C 0.068 3.932 21 H 0.085 0.915 22 N -0.340 5.340 23 C -0.367 4.367 24 H 0.098 0.902 25 C -0.262 4.262 26 N -0.603 5.603 27 Si 0.800 3.200 28 H -0.219 1.219 29 H -0.225 1.225 30 H -0.193 1.193 31 C 0.092 3.908 32 C -0.098 4.098 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.143 0.857 38 H 0.264 0.736 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.024 0.976 50 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -17.986 -21.797 -2.438 28.365 hybrid contribution 1.216 0.215 0.069 1.237 sum -16.771 -21.582 -2.369 27.434 Atomic orbital electron populations 1.22163 0.93406 1.04401 1.02552 1.22336 0.96050 0.77135 1.07141 1.45801 1.47310 1.14196 1.05616 1.25996 1.01112 0.86528 0.95208 1.70515 1.19535 1.21213 1.09907 1.20291 1.14952 0.95699 0.91175 1.16964 0.76165 0.80758 0.85864 1.90729 1.58459 1.83325 1.14747 1.48778 1.63470 1.11972 1.09489 1.22958 0.96538 1.01322 0.80393 1.22729 0.97087 0.96661 0.95550 0.92594 1.22014 0.97111 0.95177 0.95282 0.92683 1.22602 0.96758 0.85310 0.96448 1.21654 0.96838 0.94279 0.99254 0.90422 1.21459 0.95765 0.99802 0.96786 1.22067 0.98067 0.99415 0.96871 1.20743 0.86895 0.89113 0.96415 0.91452 1.44883 1.29908 1.51252 1.07942 1.19683 1.05586 1.20954 0.90470 0.90214 1.25561 1.00623 1.00409 0.99632 1.70277 1.30288 1.34754 1.24952 0.85184 0.78881 0.76301 0.79633 1.21865 1.22540 1.19348 1.20644 0.92849 0.94005 0.83296 1.22690 1.01553 0.91106 0.94431 0.93167 0.88334 0.92011 0.87443 0.85718 0.73566 0.89430 0.87197 0.88808 0.91202 0.90143 0.93096 0.89649 0.93281 0.94876 0.96727 0.97589 0.78571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.24 71.98 0.74 0.23 16 2 C 0.09 0.30 6.84 86.38 0.59 0.89 16 3 N -0.45 -5.62 2.72 -528.39 -1.44 -7.06 16 4 C 0.20 2.93 12.55 180.10 2.26 5.19 16 5 N -0.49 -12.04 8.33 -188.82 -1.57 -13.61 16 6 C -0.09 -2.56 6.85 40.50 0.28 -2.28 16 7 C 0.61 20.67 7.91 86.63 0.68 21.35 16 8 O -0.59 -22.70 17.15 -4.10 -0.07 -22.77 16 9 N -0.61 -19.80 3.32 -811.45 -2.69 -22.50 16 10 C 0.11 3.39 5.94 86.60 0.51 3.90 16 11 C -0.10 -3.62 3.47 -9.40 -0.03 -3.65 16 12 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 13 C -0.08 -2.78 3.14 -9.53 -0.03 -2.81 16 14 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.11 3.55 6.34 86.54 0.55 4.09 16 16 C -0.10 -3.86 2.86 -10.57 -0.03 -3.89 16 17 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.10 -3.34 5.30 30.58 0.16 -3.18 16 19 C -0.13 -4.23 5.52 30.68 0.17 -4.06 16 20 C 0.18 6.95 3.16 44.95 0.14 7.09 16 21 H 0.07 2.64 7.99 -2.39 -0.02 2.62 16 22 N -0.62 -31.12 2.87 -670.15 -1.92 -33.05 16 23 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 24 H 0.08 4.25 7.79 -2.91 -0.02 4.22 16 25 C -0.07 -4.04 5.47 84.86 0.46 -3.58 16 26 N -0.95 -58.21 9.77 21.65 0.21 -58.00 16 27 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 29 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 30 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 31 C 0.22 10.96 4.37 86.36 0.38 11.33 16 32 C 0.04 0.86 11.26 83.72 0.94 1.80 16 33 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.25 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.09 2.48 5.21 -2.39 -0.01 2.47 16 40 H 0.11 3.38 5.44 -2.38 -0.01 3.37 16 41 H 0.09 2.70 5.31 -2.38 -0.01 2.69 16 42 H 0.07 2.30 7.89 -2.39 -0.02 2.28 16 43 H 0.08 2.21 5.79 -2.39 -0.01 2.19 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 2.36 5.67 -2.39 -0.01 2.35 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.01 0.83 7.23 -2.39 -0.02 0.82 16 49 H 0.01 0.34 7.23 -2.39 -0.02 0.33 16 50 H 0.20 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -78.14 377.65 4.11 -74.03 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.95 Total: 14.17 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 8.62 Total: 20.04 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -7.42 Total: -134.21 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -78.14 4.11 -74.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087405606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.776 kcal (2) G-P(sol) polarization free energy of solvation -78.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds