Wall clock time and date at job start Wed Apr 1 2020 03:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47400 * 2 1 4 4 C 1.50695 * 109.47380 * 119.99937 * 2 1 3 5 5 O 1.21285 * 119.99809 * 119.99569 * 4 2 1 6 6 N 1.34773 * 120.00093 * 300.00357 * 4 2 1 7 7 C 1.46503 * 119.99838 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.41389 * 36.02776 * 7 6 4 9 9 C 1.54758 * 110.56715 * 158.58477 * 7 6 4 10 10 C 1.53377 * 101.47178 * 94.61575 * 9 7 6 11 11 C 1.52455 * 115.89014 * 252.94770 * 10 9 7 12 12 N 1.47267 * 87.72490 * 218.51796 * 11 10 9 13 13 C 1.36936 * 135.94253 * 206.24806 * 12 11 10 14 14 H 1.07997 * 120.00075 * 7.62220 * 13 12 11 15 15 C 1.38810 * 119.99814 * 187.62366 * 13 12 11 16 16 N 1.31614 * 119.99945 * 174.51813 * 15 13 12 17 17 Si 1.86807 * 120.00116 * 354.52506 * 15 13 12 18 18 H 1.48493 * 109.46976 * 174.92919 * 17 15 13 19 19 H 1.48500 * 109.46684 * 294.92580 * 17 15 13 20 20 H 1.48497 * 109.47122 * 54.92418 * 17 15 13 21 21 C 1.47269 * 88.11172 * 26.50236 * 12 11 10 22 22 N 1.46034 * 106.82817 * 24.67493 * 10 9 7 23 23 C 1.37280 * 142.29634 * 163.79568 * 22 10 9 24 24 C 1.34513 * 106.92454 * 180.16930 * 23 22 10 25 25 N 1.33980 * 108.04882 * 359.96786 * 24 23 22 26 26 C 1.30853 * 109.36012 * 359.93349 * 25 24 23 27 27 C 1.53000 * 109.47141 * 240.00193 * 2 1 3 28 28 C 1.53787 * 113.61670 * 157.49756 * 27 2 1 29 29 C 1.53785 * 87.08139 * 220.01879 * 28 27 2 30 30 C 1.53780 * 113.61702 * 59.99897 * 27 2 1 31 31 H 1.09001 * 109.47307 * 299.99951 * 1 2 3 32 32 H 1.09001 * 109.47635 * 59.99759 * 1 2 3 33 33 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 34 34 H 0.97001 * 120.00216 * 359.97438 * 6 4 2 35 35 H 1.09005 * 111.02687 * 336.56437 * 9 7 6 36 36 H 1.09003 * 111.02433 * 212.66010 * 9 7 6 37 37 H 1.09000 * 113.51180 * 103.80141 * 11 10 9 38 38 H 1.09001 * 113.56640 * 333.23767 * 11 10 9 39 39 H 0.97008 * 120.00295 * 354.79860 * 16 15 13 40 40 H 1.08997 * 113.50831 * 88.21057 * 21 12 11 41 41 H 1.09000 * 113.50654 * 218.79139 * 21 12 11 42 42 H 1.07993 * 126.53476 * 0.19854 * 23 22 10 43 43 H 1.08000 * 125.97919 * 179.97438 * 24 23 22 44 44 H 1.09001 * 112.84940 * 288.80459 * 27 2 1 45 45 H 1.09002 * 113.60971 * 334.56169 * 28 27 2 46 46 H 1.08994 * 113.61767 * 105.47099 * 28 27 2 47 47 H 1.09000 * 113.61260 * 270.88678 * 29 28 27 48 48 H 1.08997 * 113.69062 * 139.98656 * 29 28 27 49 49 H 1.08998 * 113.61671 * 254.53636 * 30 27 2 50 50 H 1.09005 * 113.61554 * 25.34809 * 30 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6506 8 1 3.2013 -1.3243 3.4841 9 6 2.1721 0.0073 4.8735 10 6 0.8145 -0.3347 5.4997 11 6 -0.2790 0.7144 5.3325 12 7 -0.7078 0.4015 6.7061 13 6 -1.8780 0.4779 7.4133 14 1 -2.7988 0.7294 6.9081 15 6 -1.8806 0.2322 8.7794 16 7 -2.9817 0.4104 9.4780 17 14 -0.3212 -0.3513 9.6266 18 1 -0.5508 -0.4219 11.0919 19 1 0.0446 -1.6974 9.1173 20 1 0.7820 0.6016 9.3436 21 6 0.6737 -0.0234 6.9886 22 7 0.4848 -1.6935 5.0784 23 6 -0.3422 -2.7502 5.3686 24 6 -0.0476 -3.7294 4.4947 25 7 0.9299 -3.2887 3.6913 26 6 1.2545 -2.0679 4.0326 27 6 2.0399 -0.7212 -1.2493 28 6 3.4726 -0.3276 -1.6461 29 6 2.9921 -0.3572 -3.1067 30 6 1.5810 -0.0723 -2.5657 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1493 0.5389 2.5436 35 1 2.2065 1.0507 4.5600 36 1 2.9878 -0.2202 5.5598 37 1 -1.0193 0.4541 4.5759 38 1 0.1039 1.7284 5.2169 39 1 -3.7699 0.7848 9.0541 40 1 1.3179 0.7885 7.3258 41 1 0.7355 -0.9051 7.6265 42 1 -1.0874 -2.7877 6.1492 43 1 -0.5169 -4.7010 4.4487 44 1 1.8757 -1.7982 -1.2129 45 1 3.7638 0.6649 -1.3024 46 1 4.2151 -1.0914 -1.4153 47 1 3.0895 -1.3349 -3.5786 48 1 3.3968 0.4499 -3.7173 49 1 0.7965 -0.6299 -3.0772 50 1 1.3537 0.9898 -2.4731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092376165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:40 Heat of formation + Delta-G solvation = 122.787235 kcal Electronic energy + Delta-G solvation = -31275.672690 eV Core-core repulsion = 27307.180505 eV Total energy + Delta-G solvation = -3968.492185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.43555 -40.30058 -39.00727 -38.41953 -35.73701 -33.67811 -32.92609 -32.02192 -30.56934 -28.56232 -27.49835 -26.42360 -25.92984 -25.45769 -24.64240 -23.11540 -21.85595 -21.07101 -20.41040 -20.08797 -19.56775 -18.98277 -17.71569 -17.30969 -16.82237 -16.11992 -15.53033 -15.39666 -15.17606 -14.82837 -14.55419 -14.47600 -14.08113 -14.01653 -13.73750 -13.44826 -13.37460 -13.09120 -12.97323 -12.74110 -12.70270 -12.46421 -12.31305 -12.24419 -12.18299 -11.82453 -11.43523 -11.32176 -11.05672 -10.74693 -10.72938 -10.62864 -10.51911 -10.34547 -9.75143 -9.66745 -9.61020 -9.36717 -9.29759 -9.14077 -9.04182 -8.08131 -7.44343 -6.48365 -3.45953 2.23444 2.62662 2.94888 3.05416 3.23673 3.26915 3.47503 3.58537 3.88741 4.27668 4.30507 4.33980 4.40998 4.41373 4.43273 4.53571 4.63506 4.69520 4.78147 4.94368 5.11257 5.15355 5.21346 5.29356 5.33257 5.46551 5.46908 5.49440 5.52433 5.55632 5.58103 5.62922 5.67482 5.73786 5.80176 5.85018 5.85859 5.91532 5.95629 5.97198 6.04543 6.07206 6.24164 6.28753 6.34146 6.75136 6.77942 7.15967 7.35506 7.44197 8.04265 8.19463 8.45433 8.76421 9.26936 10.07763 11.00941 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.002848 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.277204 B = 9830.351945 C =10145.767146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.096 0.904 4 C 0.521 3.479 5 O -0.519 6.519 6 N -0.720 5.720 7 C 0.232 3.768 8 H 0.114 0.886 9 C -0.119 4.119 10 C 0.108 3.892 11 C 0.123 3.877 12 N -0.619 5.619 13 C -0.310 4.310 14 H 0.085 0.915 15 C -0.018 4.018 16 N -0.926 5.926 17 Si 1.065 2.935 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.286 1.286 21 C 0.097 3.903 22 N -0.434 5.434 23 C 0.000 4.000 24 C -0.043 4.043 25 N -0.462 5.462 26 C 0.158 3.842 27 C -0.088 4.088 28 C -0.133 4.133 29 C -0.143 4.143 30 C -0.136 4.136 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.401 0.599 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 2.460 -19.709 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.114 0.886 4 C 0.307 3.693 5 O -0.393 6.393 6 N -0.373 5.373 7 C 0.125 3.875 8 H 0.132 0.868 9 C -0.158 4.158 10 C 0.021 3.979 11 C -0.004 4.004 12 N -0.347 5.347 13 C -0.436 4.436 14 H 0.102 0.898 15 C -0.218 4.218 16 N -0.567 5.567 17 Si 0.897 3.103 18 H -0.218 1.218 19 H -0.221 1.221 20 H -0.213 1.213 21 C -0.029 4.029 22 N -0.116 5.116 23 C -0.133 4.133 24 C -0.191 4.191 25 N -0.181 5.181 26 C -0.105 4.105 27 C -0.107 4.107 28 C -0.171 4.171 29 C -0.181 4.181 30 C -0.174 4.174 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.236 0.764 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.189 0.811 43 H 0.188 0.812 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.027 0.912 -18.636 22.756 hybrid contribution -1.649 1.304 -0.485 2.158 sum 11.377 2.216 -19.121 22.360 Atomic orbital electron populations 1.21745 0.92786 1.03064 1.02504 1.21352 0.97530 1.00333 0.92829 0.88622 1.20652 0.79921 0.84487 0.84236 1.90730 1.36923 1.25188 1.86469 1.46032 1.54562 1.31737 1.05010 1.19651 0.96151 0.87029 0.84711 0.86808 1.22776 0.96557 1.00753 0.95743 1.22297 0.94975 0.81402 0.99220 1.22607 0.92851 0.94568 0.90363 1.46033 1.04062 1.75691 1.08923 1.20114 0.83741 1.48323 0.91416 0.89750 1.25703 1.04057 0.99884 0.92190 1.70909 1.02782 1.45547 1.37491 0.83788 0.74490 0.75959 0.76074 1.21776 1.22059 1.21306 1.23035 0.88865 0.98926 0.92032 1.45700 1.28068 1.11332 1.26497 1.22549 0.99570 0.86758 1.04450 1.22231 0.99974 1.00301 0.96588 1.69812 1.14244 1.07671 1.26399 1.24476 0.99619 0.94133 0.92285 1.22370 0.96188 1.00551 0.91577 1.22911 0.96855 1.01603 0.95685 1.22800 0.96802 1.01799 0.96673 1.22967 0.97078 1.00882 0.96458 0.92226 0.91322 0.91929 0.76447 0.87289 0.87581 0.92990 0.92399 0.92674 0.91511 0.91905 0.81091 0.81173 0.88321 0.90489 0.91144 0.90281 0.91642 0.91503 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.89 37.15 0.33 -0.88 16 2 C -0.10 -0.88 2.47 -91.78 -0.23 -1.11 16 3 H 0.10 0.66 7.94 -51.93 -0.41 0.25 16 4 C 0.52 6.37 7.13 -10.99 -0.08 6.29 16 5 O -0.52 -8.39 15.55 5.55 0.09 -8.30 16 6 N -0.72 -7.96 5.02 -53.57 -0.27 -8.23 16 7 C 0.23 2.99 3.23 -67.69 -0.22 2.77 16 8 H 0.11 1.50 7.66 -51.93 -0.40 1.10 16 9 C -0.12 -1.30 6.16 -25.61 -0.16 -1.46 16 10 C 0.11 1.69 1.64 -133.37 -0.22 1.47 16 11 C 0.12 2.10 8.18 -7.90 -0.06 2.04 16 12 N -0.62 -13.83 3.70 -184.64 -0.68 -14.51 16 13 C -0.31 -8.39 11.08 -15.06 -0.17 -8.55 16 14 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 15 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 16 N -0.93 -28.11 13.70 55.49 0.76 -27.35 16 17 Si 1.06 25.41 25.17 -169.99 -4.28 21.13 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.29 -6.72 6.49 56.52 0.37 -6.35 16 20 H -0.29 -6.20 6.18 56.52 0.35 -5.86 16 21 C 0.10 1.85 5.23 -7.74 -0.04 1.81 16 22 N -0.43 -7.63 3.42 -100.92 -0.34 -7.98 16 23 C 0.00 0.01 12.03 -16.43 -0.20 -0.19 16 24 C -0.04 -0.75 11.86 -17.93 -0.21 -0.97 16 25 N -0.46 -8.80 11.25 -10.49 -0.12 -8.92 16 26 C 0.16 2.69 8.22 -154.56 -1.27 1.42 16 27 C -0.09 -0.81 2.54 -89.80 -0.23 -1.04 16 28 C -0.13 -1.15 7.60 -25.91 -0.20 -1.35 16 29 C -0.14 -1.04 8.08 -25.92 -0.21 -1.25 16 30 C -0.14 -0.98 6.68 -25.92 -0.17 -1.16 16 31 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 32 H 0.07 0.47 7.45 -51.93 -0.39 0.08 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.40 3.53 7.99 -40.82 -0.33 3.20 16 35 H 0.11 0.86 7.76 -51.93 -0.40 0.46 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.84 7.98 -51.93 -0.41 0.43 16 39 H 0.26 7.90 8.73 -40.82 -0.36 7.54 16 40 H 0.07 1.16 7.60 -51.93 -0.39 0.76 16 41 H 0.06 1.31 4.80 -51.93 -0.25 1.06 16 42 H 0.17 3.23 8.06 -52.49 -0.42 2.81 16 43 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 44 H 0.10 1.13 7.86 -51.93 -0.41 0.72 16 45 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -34.90 394.67 -10.41 -45.31 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.09 Total: 5.67 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.43 Total: -2.78 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.65 Total: -66.98 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.28 Total: 21.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.90 -10.41 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092376165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.101 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds