Wall clock time and date at job start Wed Apr 1 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47052 * 2 1 4 4 C 1.34256 * 125.75434 * 124.99526 * 3 2 1 5 5 C 1.38041 * 107.41731 * 180.02562 * 4 3 2 6 6 C 1.47426 * 126.41714 * 179.97438 * 5 4 3 7 7 O 1.21607 * 120.00053 * 180.02562 * 6 5 4 8 8 N 1.34772 * 119.99877 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99901 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.68932 * 37.01170 * 9 8 6 11 11 C 1.54856 * 110.62898 * 159.99720 * 9 8 6 12 12 C 1.55843 * 103.44452 * 118.48596 * 11 9 8 13 13 H 1.09004 * 115.56138 * 158.81298 * 12 11 9 14 14 C 1.55836 * 105.06843 * 288.17812 * 12 11 9 15 15 C 1.55876 * 103.52835 * 72.43019 * 14 12 11 16 16 C 1.55838 * 102.97105 * 359.12125 * 15 14 12 17 17 H 1.09003 * 115.56137 * 159.69415 * 16 15 14 18 18 N 1.50236 * 101.05357 * 32.94436 * 12 11 9 19 19 C 1.36935 * 130.84567 * 126.00306 * 18 12 11 20 20 H 1.07994 * 120.00248 * 180.02562 * 19 18 12 21 21 C 1.38817 * 119.99432 * 0.03444 * 19 18 12 22 22 N 1.31617 * 120.00167 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99695 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47078 * 59.99790 * 23 21 19 25 25 H 1.48503 * 109.47203 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47237 * 299.99823 * 23 21 19 27 27 C 1.41293 * 107.16847 * 0.22873 * 5 4 3 28 28 C 1.50700 * 125.98763 * 179.73706 * 27 5 4 29 29 C 1.53005 * 117.49708 * 188.74557 * 28 27 5 30 30 C 1.53001 * 117.49610 * 120.08934 * 28 27 5 31 31 N 1.30445 * 108.02459 * 359.61653 * 27 5 4 32 32 H 1.08997 * 109.47571 * 300.00027 * 1 2 3 33 33 H 1.08998 * 109.47119 * 60.00495 * 1 2 3 34 34 H 1.09001 * 109.47051 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47654 * 239.99430 * 2 1 3 36 36 H 1.09007 * 109.46552 * 119.99383 * 2 1 3 37 37 H 1.08002 * 126.29304 * 0.02562 * 4 3 2 38 38 H 0.97000 * 119.99956 * 0.02562 * 8 6 5 39 39 H 1.09007 * 110.62052 * 0.02562 * 11 9 8 40 40 H 1.08998 * 110.62699 * 236.97919 * 11 9 8 41 41 H 1.09005 * 110.63063 * 190.31249 * 14 12 11 42 42 H 1.09000 * 110.63062 * 313.18055 * 14 12 11 43 43 H 1.08999 * 110.09750 * 241.13351 * 15 14 12 44 44 H 1.08999 * 111.60118 * 117.81356 * 15 14 12 45 45 H 0.97002 * 119.99722 * 179.97438 * 22 21 19 46 46 H 1.08998 * 115.55502 * 334.42177 * 28 27 5 47 47 H 1.08998 * 117.50335 * 0.02562 * 29 28 27 48 48 H 1.09001 * 117.49837 * 145.02911 * 29 28 27 49 49 H 1.09008 * 117.50020 * 214.98004 * 30 28 27 50 50 H 1.09000 * 117.50513 * 359.97231 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0704 3.2312 0.5371 6 6 3.9312 4.2039 1.2345 7 8 4.0233 5.3427 0.8179 8 7 4.6161 3.8310 2.3337 9 6 5.4710 4.7978 3.0270 10 1 5.0180 5.7891 3.0170 11 6 5.7466 4.3387 4.4801 12 6 7.2946 4.1622 4.5168 13 1 7.7481 4.1933 5.5076 14 6 7.5766 2.8828 3.6729 15 6 7.3150 3.3472 2.2081 16 6 6.8901 4.8362 2.3839 17 1 6.9871 5.4609 1.4959 18 7 7.7299 5.2381 3.5630 19 6 8.6183 6.2683 3.7199 20 1 8.8020 6.9519 2.9043 21 6 9.2827 6.4338 4.9274 22 7 9.0585 5.6009 5.9215 23 14 10.4951 7.8388 5.1414 24 1 9.7948 9.1323 4.9369 25 1 11.0651 7.7963 6.5120 26 1 11.5886 7.7050 4.1456 27 6 2.2926 3.4756 -0.6168 28 6 2.1944 4.7842 -1.3577 29 6 1.1400 4.8940 -2.4610 30 6 2.6234 4.7984 -2.8263 31 7 1.6763 2.3694 -0.9299 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 3.3138 1.4022 1.7340 38 1 4.5429 2.9226 2.6658 39 1 5.2475 3.3915 4.6846 40 1 5.4302 5.1024 5.1906 41 1 8.6143 2.5690 3.7861 42 1 6.8998 2.0774 3.9585 43 1 6.5040 2.7655 1.7700 44 1 8.2148 3.2741 1.5973 45 1 9.5231 5.7164 6.7652 46 1 2.3979 5.6763 -0.7654 47 1 0.5170 4.0199 -2.6506 48 1 0.6500 5.8585 -2.5947 49 1 3.1088 5.7000 -3.2002 50 1 2.9771 3.8614 -3.2565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095479133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:15 Heat of formation + Delta-G solvation = 114.356607 kcal Electronic energy + Delta-G solvation = -30740.173305 eV Core-core repulsion = 26771.315540 eV Total energy + Delta-G solvation = -3968.857765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58876 -39.69248 -37.97718 -37.18174 -34.45751 -33.81424 -32.30101 -30.65976 -29.98137 -29.12088 -28.92103 -27.33136 -24.90351 -24.29303 -23.20868 -22.40617 -22.00629 -21.34209 -20.25039 -19.41428 -19.29844 -18.46871 -17.69487 -16.87733 -16.30008 -16.01944 -15.31041 -15.24531 -14.97666 -14.76053 -14.65456 -14.36318 -14.01446 -13.77491 -13.60761 -13.13202 -12.83519 -12.56102 -12.32266 -12.19158 -11.94892 -11.85816 -11.71737 -11.57485 -11.44661 -11.04596 -10.98960 -10.87485 -10.86913 -10.85204 -10.77111 -10.39083 -10.18129 -10.07901 -9.79747 -9.50798 -9.31706 -9.30597 -9.19005 -8.89859 -8.74025 -8.35940 -6.87326 -5.69540 -3.06972 1.42455 2.07737 2.11028 3.42881 3.46827 3.47836 3.61978 3.66015 3.96884 4.06146 4.34650 4.46334 4.49503 4.54290 4.74178 4.78575 4.98625 5.05308 5.13599 5.25284 5.28148 5.33171 5.41598 5.42547 5.58438 5.60769 5.67449 5.69130 5.80749 5.86289 5.90268 5.99732 6.09894 6.12752 6.15392 6.22079 6.35435 6.37164 6.40032 6.57479 6.64088 6.65015 6.76336 6.87147 7.01724 7.05926 7.31712 7.47597 7.56295 7.79696 7.98505 8.20437 8.68406 9.14075 9.76605 10.57492 11.40182 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002714 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.505954 B =10315.729980 C =11460.470540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.360 5.360 4 C 0.094 3.906 5 C -0.273 4.273 6 C 0.588 3.412 7 O -0.541 6.541 8 N -0.711 5.711 9 C 0.132 3.868 10 H 0.083 0.917 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.154 0.846 14 C -0.136 4.136 15 C -0.129 4.129 16 C 0.129 3.871 17 H 0.084 0.916 18 N -0.591 5.591 19 C -0.208 4.208 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.925 5.925 23 Si 0.916 3.084 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.161 3.839 28 C -0.078 4.078 29 C -0.171 4.171 30 C -0.159 4.159 31 N -0.299 5.299 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.181 0.819 38 H 0.389 0.611 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.254 0.746 46 H 0.140 0.860 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.857 -13.408 -10.567 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.138 5.138 4 C -0.057 4.057 5 C -0.288 4.288 6 C 0.375 3.625 7 O -0.419 6.419 8 N -0.361 5.361 9 C 0.026 3.974 10 H 0.101 0.899 11 C -0.181 4.181 12 C 0.047 3.953 13 H 0.171 0.829 14 C -0.175 4.175 15 C -0.169 4.169 16 C 0.020 3.980 17 H 0.102 0.898 18 N -0.311 5.311 19 C -0.336 4.336 20 H 0.096 0.904 21 C -0.208 4.208 22 N -0.574 5.574 23 Si 0.747 3.253 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C -0.006 4.006 28 C -0.098 4.098 29 C -0.208 4.208 30 C -0.197 4.197 31 N -0.120 5.120 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.198 0.802 38 H 0.223 0.777 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.158 0.842 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.403 -13.124 -11.472 24.632 hybrid contribution 1.169 0.335 0.923 1.526 sum -16.234 -12.789 -10.549 23.203 Atomic orbital electron populations 1.22053 0.93503 1.02968 1.03798 1.21798 0.96367 0.77017 1.04149 1.48439 1.34526 1.10333 1.20540 1.23090 0.93402 0.93930 0.95257 1.20333 1.10867 0.94416 1.03221 1.17209 0.78733 0.86616 0.79961 1.90732 1.65318 1.19982 1.65905 1.46054 1.46895 1.14645 1.28544 1.22575 0.90785 0.91697 0.92340 0.89938 1.23302 1.01124 0.99414 0.94238 1.23758 0.88925 0.84993 0.97627 0.82900 1.23217 0.99959 0.98491 0.95881 1.23044 0.99286 0.97741 0.96781 1.23189 0.89531 0.93572 0.91724 0.89766 1.46476 1.45653 1.30199 1.08779 1.19028 1.13968 1.02833 0.97777 0.90363 1.24683 1.00751 0.99422 0.95955 1.69422 1.45869 1.38235 1.03833 0.86111 0.80780 0.81618 0.76770 1.21220 1.21632 1.21298 1.21413 0.92846 0.93207 0.93088 1.20523 1.05282 0.93618 0.90404 1.23005 0.92092 1.03337 1.02391 1.22951 0.97436 1.03449 0.95890 1.77043 1.24699 0.96634 1.13638 0.91932 0.90982 0.90570 0.89438 0.88283 0.80169 0.77672 0.92892 0.91640 0.92846 0.93721 0.93212 0.93020 0.93578 0.84233 0.88351 0.88413 0.88071 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.09 37.16 0.37 -0.53 16 2 C 0.13 0.73 7.21 -4.04 -0.03 0.70 16 3 N -0.36 -3.56 3.65 -60.80 -0.22 -3.78 16 4 C 0.09 0.95 10.94 -16.56 -0.18 0.77 16 5 C -0.27 -3.75 6.13 -105.07 -0.64 -4.39 16 6 C 0.59 9.56 7.81 -12.52 -0.10 9.47 16 7 O -0.54 -10.70 14.73 5.27 0.08 -10.62 16 8 N -0.71 -10.65 3.65 -52.46 -0.19 -10.84 16 9 C 0.13 2.47 3.08 -65.43 -0.20 2.27 16 10 H 0.08 1.75 7.71 -51.93 -0.40 1.35 16 11 C -0.14 -2.64 6.20 -24.23 -0.15 -2.79 16 12 C 0.15 3.43 4.72 -62.81 -0.30 3.13 16 13 H 0.15 3.91 5.52 -51.93 -0.29 3.62 16 14 C -0.14 -2.59 6.46 -23.68 -0.15 -2.74 16 15 C -0.13 -2.39 6.42 -23.68 -0.15 -2.55 16 16 C 0.13 2.73 5.29 -62.80 -0.33 2.40 16 17 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 18 N -0.59 -14.74 2.98 -145.82 -0.43 -15.18 16 19 C -0.21 -5.76 10.59 -15.06 -0.16 -5.92 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -26.21 10.47 55.49 0.58 -25.63 16 23 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.16 2.25 6.79 -82.02 -0.56 1.69 16 28 C -0.08 -1.04 5.65 -91.77 -0.52 -1.56 16 29 C -0.17 -1.81 10.14 -26.69 -0.27 -2.08 16 30 C -0.16 -1.80 10.24 -26.69 -0.27 -2.07 16 31 N -0.30 -3.79 11.92 33.90 0.40 -3.38 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.30 8.06 -51.93 -0.42 -0.12 16 37 H 0.18 1.12 7.46 -52.49 -0.39 0.73 16 38 H 0.39 4.64 6.97 -40.82 -0.28 4.36 16 39 H 0.05 0.82 7.34 -51.93 -0.38 0.44 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.04 0.70 7.82 -51.93 -0.41 0.30 16 43 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 46 H 0.14 2.07 6.73 -51.93 -0.35 1.72 16 47 H 0.10 1.05 7.90 -51.93 -0.41 0.64 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 50 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -33.03 399.29 -10.39 -43.43 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.87 Total: 7.55 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.74 Total: -4.67 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.14 Total: -58.81 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.03 -10.39 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095479133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.783 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds