Wall clock time and date at job start Wed Apr 1 2020 03:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47052 * 2 1 4 4 C 1.34256 * 125.75434 * 124.99526 * 3 2 1 5 5 C 1.38041 * 107.41731 * 180.02562 * 4 3 2 6 6 C 1.47426 * 126.41714 * 179.97438 * 5 4 3 7 7 O 1.21607 * 120.00053 * 180.02562 * 6 5 4 8 8 N 1.34772 * 119.99877 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99901 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.68932 * 37.01170 * 9 8 6 11 11 C 1.54856 * 110.62898 * 159.99720 * 9 8 6 12 12 C 1.55843 * 103.44452 * 118.48596 * 11 9 8 13 13 H 1.09004 * 115.56138 * 158.81298 * 12 11 9 14 14 C 1.55836 * 105.06843 * 288.17812 * 12 11 9 15 15 C 1.55876 * 103.52835 * 72.43019 * 14 12 11 16 16 C 1.55838 * 102.97105 * 359.12125 * 15 14 12 17 17 H 1.09003 * 115.56137 * 159.69415 * 16 15 14 18 18 N 1.50236 * 101.05357 * 32.94436 * 12 11 9 19 19 C 1.36935 * 130.84567 * 126.00306 * 18 12 11 20 20 H 1.07994 * 120.00248 * 180.02562 * 19 18 12 21 21 C 1.38817 * 119.99432 * 0.03444 * 19 18 12 22 22 N 1.31617 * 120.00167 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99695 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47078 * 59.99790 * 23 21 19 25 25 H 1.48503 * 109.47203 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47237 * 299.99823 * 23 21 19 27 27 C 1.41293 * 107.16847 * 0.22873 * 5 4 3 28 28 C 1.50700 * 125.98763 * 179.73706 * 27 5 4 29 29 C 1.53005 * 117.49708 * 188.74557 * 28 27 5 30 30 C 1.53001 * 117.49610 * 120.08934 * 28 27 5 31 31 N 1.30445 * 108.02459 * 359.61653 * 27 5 4 32 32 H 1.08997 * 109.47571 * 300.00027 * 1 2 3 33 33 H 1.08998 * 109.47119 * 60.00495 * 1 2 3 34 34 H 1.09001 * 109.47051 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47654 * 239.99430 * 2 1 3 36 36 H 1.09007 * 109.46552 * 119.99383 * 2 1 3 37 37 H 1.08002 * 126.29304 * 0.02562 * 4 3 2 38 38 H 0.97000 * 119.99956 * 0.02562 * 8 6 5 39 39 H 1.09007 * 110.62052 * 0.02562 * 11 9 8 40 40 H 1.08998 * 110.62699 * 236.97919 * 11 9 8 41 41 H 1.09005 * 110.63063 * 190.31249 * 14 12 11 42 42 H 1.09000 * 110.63062 * 313.18055 * 14 12 11 43 43 H 1.08999 * 110.09750 * 241.13351 * 15 14 12 44 44 H 1.08999 * 111.60118 * 117.81356 * 15 14 12 45 45 H 0.97002 * 119.99722 * 179.97438 * 22 21 19 46 46 H 1.08998 * 115.55502 * 334.42177 * 28 27 5 47 47 H 1.08998 * 117.50335 * 0.02562 * 29 28 27 48 48 H 1.09001 * 117.49837 * 145.02911 * 29 28 27 49 49 H 1.09008 * 117.50020 * 214.98004 * 30 28 27 50 50 H 1.09000 * 117.50513 * 359.97231 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0704 3.2312 0.5371 6 6 3.9312 4.2039 1.2345 7 8 4.0233 5.3427 0.8179 8 7 4.6161 3.8310 2.3337 9 6 5.4710 4.7978 3.0270 10 1 5.0180 5.7891 3.0170 11 6 5.7466 4.3387 4.4801 12 6 7.2946 4.1622 4.5168 13 1 7.7481 4.1933 5.5076 14 6 7.5766 2.8828 3.6729 15 6 7.3150 3.3472 2.2081 16 6 6.8901 4.8362 2.3839 17 1 6.9871 5.4609 1.4959 18 7 7.7299 5.2381 3.5630 19 6 8.6183 6.2683 3.7199 20 1 8.8020 6.9519 2.9043 21 6 9.2827 6.4338 4.9274 22 7 9.0585 5.6009 5.9215 23 14 10.4951 7.8388 5.1414 24 1 9.7948 9.1323 4.9369 25 1 11.0651 7.7963 6.5120 26 1 11.5886 7.7050 4.1456 27 6 2.2926 3.4756 -0.6168 28 6 2.1944 4.7842 -1.3577 29 6 1.1400 4.8940 -2.4610 30 6 2.6234 4.7984 -2.8263 31 7 1.6763 2.3694 -0.9299 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 3.3138 1.4022 1.7340 38 1 4.5429 2.9226 2.6658 39 1 5.2475 3.3915 4.6846 40 1 5.4302 5.1024 5.1906 41 1 8.6143 2.5690 3.7861 42 1 6.8998 2.0774 3.9585 43 1 6.5040 2.7655 1.7700 44 1 8.2148 3.2741 1.5973 45 1 9.5231 5.7164 6.7652 46 1 2.3979 5.6763 -0.7654 47 1 0.5170 4.0199 -2.6506 48 1 0.6500 5.8585 -2.5947 49 1 3.1088 5.7000 -3.2002 50 1 2.9771 3.8614 -3.2565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095479133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:14 Heat of formation + Delta-G solvation = 94.847555 kcal Electronic energy + Delta-G solvation = -30741.019281 eV Core-core repulsion = 26771.315540 eV Total energy + Delta-G solvation = -3969.703741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.47469 -41.19105 -39.37589 -38.08364 -35.37365 -35.07717 -34.16263 -31.64917 -30.93813 -30.84480 -30.39138 -28.88011 -26.15380 -25.59913 -24.34775 -23.27615 -22.81422 -22.69780 -21.65660 -20.95595 -20.38901 -19.89243 -18.99377 -18.41479 -17.36655 -16.83653 -16.77177 -16.52807 -16.28070 -16.11374 -15.80413 -15.65081 -15.19384 -15.08432 -14.65794 -14.05440 -14.01339 -13.89089 -13.44895 -13.38490 -13.20543 -13.05451 -12.84859 -12.77628 -12.77223 -12.54225 -12.45393 -12.41799 -12.31139 -11.99581 -11.87779 -11.80991 -11.70917 -11.51107 -11.35080 -11.12473 -11.00633 -10.74969 -10.67259 -10.17342 -9.96802 -9.52385 -8.81675 -7.77478 -5.16040 0.58907 1.07051 1.43770 1.46929 1.49309 1.55212 2.32292 2.50292 2.54088 3.04718 3.31542 3.36076 3.57297 3.58390 3.88820 3.97376 4.00279 4.10907 4.11199 4.14684 4.18135 4.21092 4.34230 4.40059 4.47206 4.48927 4.53680 4.65927 4.70238 4.74087 4.77083 4.83244 4.85968 4.90170 4.96192 5.02928 5.10855 5.19399 5.20939 5.24651 5.25445 5.31294 5.37035 5.47947 5.50574 5.60383 5.81768 5.92935 5.97286 6.31394 6.57232 6.82341 7.08686 7.47905 7.71793 8.58308 9.29163 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002714 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.505954 B =10315.729980 C =11460.470540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.352 5.352 4 C 0.123 3.877 5 C -0.311 4.311 6 C 0.589 3.411 7 O -0.587 6.587 8 N -0.695 5.695 9 C 0.152 3.848 10 H 0.049 0.951 11 C -0.125 4.125 12 C 0.138 3.862 13 H 0.121 0.879 14 C -0.123 4.123 15 C -0.114 4.114 16 C 0.118 3.882 17 H 0.059 0.941 18 N -0.619 5.619 19 C -0.225 4.225 20 H 0.068 0.932 21 C -0.062 4.062 22 N -0.943 5.943 23 Si 0.974 3.026 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.145 3.855 28 C -0.103 4.103 29 C -0.151 4.151 30 C -0.156 4.156 31 N -0.316 5.316 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.229 0.771 38 H 0.411 0.589 39 H 0.100 0.900 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.249 0.751 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.112 0.888 49 H 0.107 0.893 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 -16.956 -10.696 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.002 4.002 3 N -0.129 5.129 4 C -0.030 4.030 5 C -0.326 4.326 6 C 0.378 3.622 7 O -0.468 6.468 8 N -0.346 5.346 9 C 0.045 3.955 10 H 0.067 0.933 11 C -0.164 4.164 12 C 0.032 3.968 13 H 0.138 0.862 14 C -0.162 4.162 15 C -0.154 4.154 16 C 0.010 3.990 17 H 0.077 0.923 18 N -0.341 5.341 19 C -0.354 4.354 20 H 0.086 0.914 21 C -0.255 4.255 22 N -0.593 5.593 23 Si 0.803 3.197 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.209 1.209 27 C -0.022 4.022 28 C -0.124 4.124 29 C -0.188 4.188 30 C -0.194 4.194 31 N -0.138 5.138 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.156 0.844 37 H 0.246 0.754 38 H 0.249 0.751 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.132 0.868 47 H 0.118 0.882 48 H 0.131 0.869 49 H 0.125 0.875 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.914 -16.743 -11.629 27.808 hybrid contribution 1.534 1.371 0.902 2.246 sum -17.380 -15.373 -10.727 25.562 Atomic orbital electron populations 1.22025 0.93512 1.04175 1.02241 1.22293 0.96407 0.74887 1.06617 1.48870 1.33531 1.11163 1.19375 1.23671 0.91606 0.92405 0.95298 1.20149 1.12441 0.95731 1.04264 1.17602 0.78444 0.86475 0.79675 1.90718 1.66774 1.22228 1.67127 1.45697 1.45985 1.14901 1.28056 1.21994 0.89643 0.91389 0.92510 0.93261 1.23129 0.98821 1.01120 0.93363 1.23703 0.90823 0.85964 0.96334 0.86170 1.23112 1.00040 0.98005 0.95017 1.22938 0.99933 0.95740 0.96754 1.23312 0.90615 0.94962 0.90125 0.92275 1.46739 1.46035 1.30471 1.10882 1.19251 1.14745 1.03716 0.97722 0.91406 1.25374 1.02542 1.01724 0.95855 1.69648 1.46525 1.39291 1.03788 0.85211 0.78864 0.79091 0.76507 1.21111 1.21508 1.20915 1.21521 0.93399 0.93640 0.93601 1.20441 1.07739 0.93142 0.91031 1.23033 0.91614 1.04132 1.00070 1.22981 0.98192 1.03666 0.94538 1.76999 1.24982 0.96895 1.14878 0.92763 0.93229 0.87994 0.88429 0.84356 0.75449 0.75144 0.88150 0.93643 0.94849 0.88880 0.89571 0.94208 0.94121 0.86786 0.88193 0.86922 0.87452 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 10.09 71.98 0.73 -0.52 16 2 C 0.12 0.80 7.21 86.38 0.62 1.42 16 3 N -0.35 -5.67 3.65 -346.29 -1.26 -6.93 16 4 C 0.12 1.94 10.94 84.28 0.92 2.86 16 5 C -0.31 -7.97 6.13 -20.15 -0.12 -8.09 16 6 C 0.59 18.71 7.81 86.66 0.68 19.39 16 7 O -0.59 -24.14 14.73 -4.05 -0.06 -24.19 16 8 N -0.69 -19.12 3.65 -438.16 -1.60 -20.72 16 9 C 0.15 5.63 3.08 46.61 0.14 5.78 16 10 H 0.05 2.17 7.71 -2.39 -0.02 2.15 16 11 C -0.12 -4.49 6.20 32.21 0.20 -4.29 16 12 C 0.14 6.09 4.72 46.22 0.22 6.31 16 13 H 0.12 6.24 5.52 -2.38 -0.01 6.23 16 14 C -0.12 -4.35 6.46 32.57 0.21 -4.14 16 15 C -0.11 -4.02 6.42 32.57 0.21 -3.81 16 16 C 0.12 5.06 5.29 46.23 0.24 5.30 16 17 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 18 N -0.62 -31.73 2.98 -615.27 -1.83 -33.57 16 19 C -0.23 -12.97 10.59 84.03 0.89 -12.08 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 22 N -0.94 -54.80 10.47 21.65 0.23 -54.57 16 23 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 27 C 0.14 3.95 6.79 43.52 0.30 4.24 16 28 C -0.10 -2.82 5.65 -11.54 -0.07 -2.88 16 29 C -0.15 -3.17 10.14 30.62 0.31 -2.86 16 30 C -0.16 -3.54 10.24 30.62 0.31 -3.23 16 31 N -0.32 -7.48 11.92 -46.68 -0.56 -8.04 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.14 -0.06 8.06 -2.38 -0.02 -0.08 16 37 H 0.23 1.19 7.46 -2.91 -0.02 1.17 16 38 H 0.41 7.67 6.97 -92.71 -0.65 7.03 16 39 H 0.10 2.63 7.34 -2.38 -0.02 2.61 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.09 2.41 7.82 -2.39 -0.02 2.40 16 43 H 0.09 2.39 6.56 -2.39 -0.02 2.37 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 46 H 0.11 3.66 6.73 -2.39 -0.02 3.64 16 47 H 0.10 2.06 7.90 -2.39 -0.02 2.04 16 48 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 50 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -78.60 399.29 3.51 -75.09 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.31 Total: 23.90 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 6.26 Total: 0.34 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -5.03 Total: -123.83 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -78.60 3.51 -75.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095479133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.935 kcal (2) G-P(sol) polarization free energy of solvation -78.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds