Wall clock time and date at job start Wed Apr 1 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.45677 * 2 1 4 4 C 1.53132 * 109.45965 * 119.97484 * 2 1 3 5 5 C 1.53388 * 109.25633 * 189.81883 * 4 2 1 6 6 C 1.51106 * 108.18430 * 311.04216 * 5 4 2 7 7 N 1.29791 * 127.16912 * 196.02607 * 6 5 4 8 8 C 1.35889 * 108.84803 * 179.86825 * 7 6 5 9 9 C 1.47326 * 126.21060 * 180.02562 * 8 7 6 10 10 O 1.21623 * 120.00077 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99979 * 0.03311 * 9 8 7 12 12 C 1.46502 * 119.99760 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.56106 * 33.09725 * 12 11 9 14 14 C 1.54846 * 110.62641 * 156.00185 * 12 11 9 15 15 C 1.55842 * 103.45045 * 118.48621 * 14 12 11 16 16 H 1.09002 * 115.56442 * 158.80952 * 15 14 12 17 17 C 1.55844 * 105.06180 * 288.17763 * 15 14 12 18 18 C 1.54849 * 103.44879 * 71.82239 * 17 15 14 19 19 C 1.55842 * 103.44508 * 359.97438 * 18 17 15 20 20 H 1.09000 * 116.13007 * 159.14648 * 19 18 17 21 21 N 1.50237 * 101.04622 * 32.93662 * 15 14 12 22 22 C 1.36944 * 130.83820 * 125.99931 * 21 15 14 23 23 H 1.07995 * 120.00351 * 180.02562 * 22 21 15 24 24 C 1.38813 * 119.99544 * 0.02562 * 22 21 15 25 25 N 1.31618 * 120.00249 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99520 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47390 * 90.00167 * 26 24 22 28 28 H 1.48503 * 109.47103 * 209.99932 * 26 24 22 29 29 H 1.48501 * 109.47281 * 329.99839 * 26 24 22 30 30 C 1.36575 * 107.57966 * 0.02641 * 8 7 6 31 31 N 1.34869 * 106.78456 * 0.02562 * 30 8 7 32 32 C 1.46577 * 127.50016 * 179.91242 * 31 30 8 33 33 H 1.08996 * 109.46939 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47141 * 59.99876 * 1 2 3 35 35 H 1.09003 * 109.46963 * 299.99977 * 1 2 3 36 36 H 1.08997 * 109.50693 * 309.74894 * 4 2 1 37 37 H 1.09002 * 109.50622 * 69.88112 * 4 2 1 38 38 H 1.09000 * 109.73223 * 191.35687 * 5 4 2 39 39 H 1.09003 * 109.74923 * 70.72757 * 5 4 2 40 40 H 0.96991 * 119.99998 * 359.97438 * 11 9 8 41 41 H 1.09004 * 110.62750 * 236.97954 * 14 12 11 42 42 H 1.09000 * 110.62705 * 359.97438 * 14 12 11 43 43 H 1.09000 * 110.62285 * 190.31157 * 17 15 14 44 44 H 1.08997 * 110.63005 * 313.32852 * 17 15 14 45 45 H 1.08997 * 110.62843 * 241.50900 * 18 17 15 46 46 H 1.09001 * 110.76461 * 118.55002 * 18 17 15 47 47 H 0.97008 * 119.99696 * 180.02562 * 25 24 22 48 48 H 1.07995 * 126.60791 * 180.02562 * 30 8 7 49 49 H 1.08998 * 109.58754 * 77.39162 * 32 31 30 50 50 H 1.09005 * 109.70065 * 317.04140 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0402 -0.7214 1.2507 5 6 3.5541 -0.5083 1.3755 6 6 4.1860 -0.8201 0.0388 7 7 5.4419 -1.0418 -0.2022 8 6 5.5976 -1.2862 -1.5299 9 6 6.8662 -1.5848 -2.2169 10 8 6.8755 -1.7860 -3.4163 11 7 8.0164 -1.6351 -1.5163 12 6 9.2778 -1.9326 -2.1994 13 1 9.2690 -1.5296 -3.2122 14 6 10.4778 -1.3697 -1.3987 15 6 11.3047 -2.6418 -1.0427 16 1 12.3530 -2.4686 -0.7996 17 6 10.4625 -3.3826 0.0393 18 6 9.2625 -3.9455 -0.7614 19 6 9.5427 -3.4677 -2.2180 20 1 9.0396 -4.0221 -3.0103 21 7 11.0448 -3.5006 -2.2477 22 6 11.9103 -4.1214 -3.1085 23 1 11.5269 -4.7060 -3.9316 24 6 13.2805 -3.9990 -2.9230 25 7 13.7478 -3.2868 -1.9197 26 14 14.4611 -4.8451 -4.0976 27 1 14.7822 -3.9295 -5.2217 28 1 15.7095 -5.1988 -3.3753 29 1 13.8303 -6.0797 -4.6296 30 6 4.3647 -1.2047 -2.1117 31 7 3.4886 -0.9129 -1.1287 32 6 2.0406 -0.7216 -1.2517 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3633 0.5138 0.8900 36 1 1.5421 -0.3179 2.1322 37 1 1.8283 -1.7874 1.1680 38 1 3.9579 -1.1746 2.1377 39 1 3.7592 0.5274 1.6466 40 1 8.0091 -1.4743 -0.5598 41 1 11.0657 -0.6897 -2.0152 42 1 10.1344 -0.8689 -0.4936 43 1 11.0391 -4.1921 0.4868 44 1 10.1206 -2.6850 0.8039 45 1 8.3255 -3.5271 -0.3940 46 1 9.2413 -5.0342 -0.7115 47 1 14.7054 -3.2010 -1.7904 48 1 4.1354 -1.3466 -3.1575 49 1 1.5501 -1.6909 -1.3399 50 1 1.8231 -0.1204 -2.1346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095615794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:19 Heat of formation + Delta-G solvation = 42.118044 kcal Electronic energy + Delta-G solvation = -30466.138316 eV Core-core repulsion = 26494.148052 eV Total energy + Delta-G solvation = -3971.990264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.42711 -41.37026 -39.64233 -38.04242 -35.45413 -34.47030 -34.09802 -32.51444 -31.02467 -30.76607 -29.88021 -29.17002 -27.42493 -26.15109 -24.88870 -24.05655 -22.80257 -22.34265 -21.56424 -20.95132 -20.17332 -19.95621 -19.02174 -18.54432 -17.29489 -17.06074 -16.81628 -16.76548 -16.31323 -15.93684 -15.67490 -15.38911 -15.14615 -15.12446 -14.83872 -14.59515 -14.08671 -14.06637 -13.90037 -13.49162 -13.32285 -13.22307 -13.10041 -12.87682 -12.77581 -12.61732 -12.42823 -12.39158 -11.99620 -11.99300 -11.90987 -11.79882 -11.66778 -11.58853 -11.34366 -11.17824 -11.05897 -10.94013 -10.78363 -10.68697 -10.01675 -9.45434 -8.85803 -7.78635 -5.18527 0.56541 1.38754 1.46479 1.48580 1.56592 1.63803 2.29207 2.52163 2.53821 3.16081 3.34365 3.44912 3.53401 3.60371 3.72369 3.89343 4.00003 4.07682 4.12369 4.15849 4.27810 4.38455 4.40444 4.43168 4.46607 4.48772 4.58835 4.59449 4.69728 4.73038 4.79915 4.91842 4.95319 4.96215 5.02454 5.06332 5.12840 5.13467 5.17701 5.22613 5.32031 5.32526 5.42740 5.43333 5.46312 5.54768 5.72728 5.88393 6.07524 6.26335 6.57390 6.90717 7.05558 7.30678 7.68708 8.55593 9.28515 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.030907 B = 0.002198 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.736494 B =12733.563998 C =13189.580177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.116 4.116 5 C -0.034 4.034 6 C 0.210 3.790 7 N -0.486 5.486 8 C -0.093 4.093 9 C 0.596 3.404 10 O -0.588 6.588 11 N -0.687 5.687 12 C 0.145 3.855 13 H 0.057 0.943 14 C -0.128 4.128 15 C 0.142 3.858 16 H 0.124 0.876 17 C -0.124 4.124 18 C -0.115 4.115 19 C 0.120 3.880 20 H 0.069 0.931 21 N -0.616 5.616 22 C -0.224 4.224 23 H 0.073 0.927 24 C -0.066 4.066 25 N -0.944 5.944 26 Si 0.980 3.020 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.276 1.276 30 C 0.042 3.958 31 N -0.447 5.447 32 C 0.096 3.904 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.412 0.588 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.039 0.961 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.249 0.751 48 H 0.200 0.800 49 H 0.102 0.898 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.307 9.221 10.053 34.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.154 4.154 5 C -0.073 4.073 6 C -0.055 4.055 7 N -0.206 5.206 8 C -0.221 4.221 9 C 0.384 3.616 10 O -0.469 6.469 11 N -0.337 5.337 12 C 0.038 3.962 13 H 0.075 0.925 14 C -0.167 4.167 15 C 0.036 3.964 16 H 0.142 0.858 17 C -0.163 4.163 18 C -0.155 4.155 19 C 0.012 3.988 20 H 0.087 0.913 21 N -0.338 5.338 22 C -0.353 4.353 23 H 0.090 0.910 24 C -0.259 4.259 25 N -0.594 5.594 26 Si 0.808 3.192 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.201 1.201 30 C -0.100 4.100 31 N -0.128 5.128 32 C -0.024 4.024 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.217 0.783 49 H 0.120 0.880 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -30.486 9.002 9.648 33.219 hybrid contribution 0.674 -0.561 -1.348 1.608 sum -29.812 8.441 8.301 32.076 Atomic orbital electron populations 1.21740 0.91555 1.03091 1.03398 1.21477 0.98096 0.99871 0.92589 0.89990 1.21789 0.92884 1.01604 0.99117 1.20467 0.95111 1.04208 0.87470 1.24275 0.86544 1.03525 0.91120 1.70306 1.17679 1.18708 1.13928 1.20429 0.93588 1.16674 0.91430 1.17319 0.83047 0.75708 0.85535 1.90750 1.87208 1.53255 1.15715 1.45805 1.05819 1.69826 1.12251 1.22153 0.82424 0.96251 0.95391 0.92462 1.23146 0.95452 0.98696 0.99440 1.23676 0.99312 0.87809 0.85623 0.85836 1.22918 0.96296 0.99529 0.97595 1.22771 0.98003 0.99192 0.95515 1.23307 0.84958 0.94392 0.96138 0.91285 1.46744 0.99752 1.57069 1.30245 1.19320 0.87511 1.23208 1.05283 0.90959 1.25468 0.97761 1.02051 1.00577 1.69672 1.11940 1.45503 1.32273 0.85053 0.78249 0.78010 0.77846 1.21595 1.21672 1.20080 1.22616 0.88611 1.02567 0.96169 1.45539 1.09869 1.50429 1.06958 1.22581 0.74237 1.03658 1.01966 0.91668 0.91645 0.90708 0.87494 0.91122 0.88056 0.87962 0.75019 0.93217 0.89292 0.94194 0.90035 0.90513 0.93719 0.94086 0.78319 0.88031 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.12 9.17 71.98 0.66 0.54 16 2 C -0.10 -0.43 2.73 -10.67 -0.03 -0.46 16 3 H 0.08 0.43 8.11 -2.39 -0.02 0.41 16 4 C -0.12 -0.55 5.25 30.77 0.16 -0.39 16 5 C -0.03 -0.35 6.33 30.11 0.19 -0.16 16 6 C 0.21 4.14 7.64 138.05 1.05 5.20 16 7 N -0.49 -13.32 11.00 -176.08 -1.94 -15.25 16 8 C -0.09 -2.83 6.98 40.52 0.28 -2.55 16 9 C 0.60 22.05 7.81 86.63 0.68 22.73 16 10 O -0.59 -25.57 16.54 -4.10 -0.07 -25.64 16 11 N -0.69 -24.44 3.70 -438.35 -1.62 -26.06 16 12 C 0.14 6.08 3.14 46.59 0.15 6.22 16 13 H 0.06 2.71 7.58 -2.39 -0.02 2.69 16 14 C -0.13 -5.28 6.20 32.21 0.20 -5.08 16 15 C 0.14 6.83 4.72 46.23 0.22 7.05 16 16 H 0.12 6.82 5.52 -2.39 -0.01 6.80 16 17 C -0.12 -5.05 6.44 32.21 0.21 -4.85 16 18 C -0.12 -4.61 6.32 32.21 0.20 -4.41 16 19 C 0.12 5.54 5.35 46.20 0.25 5.79 16 20 H 0.07 3.34 8.14 -2.39 -0.02 3.33 16 21 N -0.62 -33.11 2.99 -615.27 -1.84 -34.95 16 22 C -0.22 -13.20 10.59 84.03 0.89 -12.31 16 23 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 24 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 25 N -0.94 -56.50 10.46 21.65 0.23 -56.27 16 26 Si 0.98 47.51 29.55 68.60 2.03 49.53 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 30 C 0.04 0.98 11.32 83.84 0.95 1.93 16 31 N -0.45 -7.64 3.11 -512.77 -1.60 -9.23 16 32 C 0.10 0.72 6.25 86.44 0.54 1.26 16 33 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.11 0.09 8.12 -2.39 -0.02 0.07 16 37 H 0.07 0.40 8.12 -2.39 -0.02 0.38 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.41 13.15 7.63 -92.71 -0.71 12.45 16 41 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.09 3.05 7.39 -2.39 -0.02 3.03 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 44 H 0.08 2.73 7.82 -2.39 -0.02 2.72 16 45 H 0.08 2.71 6.39 -2.39 -0.02 2.70 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 48 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 49 H 0.10 0.55 8.12 -2.39 -0.02 0.53 16 50 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -76.85 390.83 2.50 -74.35 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.24 Total: 26.39 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 7.07 Total: 17.14 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -6.77 Total: -141.77 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.07 Total: -25.64 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Total: -76.85 2.50 -74.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095615794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.467 kcal (2) G-P(sol) polarization free energy of solvation -76.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds