Wall clock time and date at job start Wed Apr 1 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40300 * 126.08739 * 2 1 4 4 C 1.31068 * 108.27134 * 179.97438 * 3 2 1 5 5 C 1.39306 * 108.07648 * 359.97438 * 4 3 2 6 6 C 1.34325 * 126.09618 * 179.97438 * 2 1 3 7 7 C 1.50821 * 128.03122 * 0.12320 * 6 2 1 8 8 C 1.53366 * 108.38180 * 163.45545 * 7 6 2 9 9 H 1.09007 * 109.45947 * 289.90937 * 8 7 6 10 10 C 1.50705 * 109.46295 * 169.93010 * 8 7 6 11 11 O 1.21281 * 120.00008 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99466 * 179.97438 * 10 8 7 13 13 C 1.46506 * 119.99354 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.56223 * 36.92751 * 13 12 10 15 15 C 1.54852 * 110.62564 * 159.82845 * 13 12 10 16 16 C 1.56220 * 103.27263 * 118.44934 * 15 13 12 17 17 H 1.09001 * 116.06768 * 159.21689 * 16 15 13 18 18 C 1.55846 * 105.14841 * 288.27262 * 16 15 13 19 19 C 1.54844 * 103.44445 * 71.82929 * 18 16 15 20 20 C 1.55845 * 103.44924 * 0.02562 * 19 18 16 21 21 H 1.08997 * 115.56312 * 159.56618 * 20 19 18 22 22 N 1.50238 * 101.04965 * 32.93683 * 20 19 18 23 23 C 1.36935 * 130.83848 * 126.01262 * 22 20 19 24 24 H 1.07998 * 120.00082 * 0.02562 * 23 22 20 25 25 C 1.38816 * 120.00023 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99679 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00125 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47288 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.47060 * 120.00032 * 27 25 23 30 30 H 1.48498 * 109.47381 * 240.00097 * 27 25 23 31 31 C 1.53100 * 109.50636 * 49.92009 * 8 7 6 32 32 C 1.50837 * 127.89511 * 180.15456 * 5 4 3 33 33 H 1.08993 * 109.47296 * 270.02472 * 1 2 3 34 34 H 1.09003 * 109.47205 * 30.03077 * 1 2 3 35 35 H 1.09004 * 109.46687 * 150.02809 * 1 2 3 36 36 H 1.07999 * 125.96308 * 179.97438 * 4 3 2 37 37 H 1.08999 * 109.68363 * 43.73399 * 7 6 2 38 38 H 1.09003 * 109.71399 * 283.18970 * 7 6 2 39 39 H 0.96996 * 120.00592 * 0.02562 * 12 10 8 40 40 H 1.09004 * 110.62858 * 236.97840 * 15 13 12 41 41 H 1.09008 * 110.62840 * 359.97438 * 15 13 12 42 42 H 1.09000 * 110.62504 * 313.33889 * 18 16 15 43 43 H 1.08999 * 110.76202 * 190.38617 * 18 16 15 44 44 H 1.09000 * 110.62930 * 241.51104 * 19 18 16 45 45 H 1.09007 * 110.76192 * 118.55646 * 19 18 16 46 46 H 0.97007 * 120.00082 * 180.02562 * 26 25 23 47 47 H 1.08999 * 109.46977 * 49.74389 * 31 8 7 48 48 H 1.09001 * 109.46460 * 169.71682 * 31 8 7 49 49 H 1.08992 * 109.68544 * 283.04894 * 32 5 4 50 50 H 1.09004 * 109.68515 * 43.61426 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5392 0.7328 0.0006 5 6 3.5455 -0.6603 0.0015 6 6 2.2563 -1.0854 0.0005 7 6 1.8438 -2.5361 -0.0014 8 6 3.0542 -3.3825 -0.4145 9 1 3.2704 -3.2164 -1.4699 10 6 2.7481 -4.8407 -0.1881 11 8 1.6704 -5.1717 0.2592 12 7 3.6718 -5.7768 -0.4827 13 6 3.3740 -7.1943 -0.2632 14 1 2.3313 -7.4074 -0.4988 15 6 4.3172 -8.0869 -1.1067 16 6 5.0885 -8.9132 -0.0283 17 1 5.5464 -9.8405 -0.3724 18 6 6.0561 -7.8963 0.6488 19 6 5.1100 -7.0036 1.4889 20 6 3.6996 -7.6031 1.2057 21 1 2.9312 -7.3656 1.9413 22 7 4.0343 -9.0575 1.0330 23 6 3.5332 -10.1713 1.6521 24 1 2.7640 -10.0714 2.4036 25 6 4.0131 -11.4290 1.3130 26 7 4.9501 -11.5508 0.3968 27 14 3.3289 -12.9485 2.1571 28 1 2.2923 -12.5441 3.1404 29 1 2.7238 -13.8482 1.1424 30 1 4.4264 -13.6613 2.8590 31 6 4.2698 -2.9801 0.4249 32 6 4.7400 -1.5813 0.0056 33 1 -0.3633 0.0004 1.0276 34 1 -0.3634 0.8897 -0.5143 35 1 -0.3633 -0.8903 -0.5134 36 1 4.4105 1.3709 0.0003 37 1 1.0314 -2.6858 -0.7124 38 1 1.5163 -2.8265 0.9968 39 1 4.5338 -5.5120 -0.8401 40 1 3.7422 -8.7446 -1.7586 41 1 5.0063 -7.4749 -1.6887 42 1 6.5769 -7.3030 -0.1028 43 1 6.7697 -8.4113 1.2918 44 1 5.1616 -5.9676 1.1540 45 1 5.3515 -7.0756 2.5495 46 1 5.2852 -12.4297 0.1596 47 1 3.9961 -2.9719 1.4799 48 1 5.0753 -3.6967 0.2644 49 1 5.1752 -1.6227 -0.9928 50 1 5.4825 -1.2166 0.7155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095921187.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:59 Heat of formation + Delta-G solvation = 81.397942 kcal Electronic energy + Delta-G solvation = -30923.416302 eV Core-core repulsion = 26953.129342 eV Total energy + Delta-G solvation = -3970.286960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77599 -40.14699 -38.60706 -36.22857 -34.01739 -33.83774 -32.34282 -30.48603 -30.13458 -29.21316 -28.96414 -27.49554 -26.82442 -24.59679 -23.82185 -22.64597 -21.38431 -21.12734 -20.33571 -19.49135 -18.90729 -18.52661 -17.47810 -16.93273 -16.49001 -15.82838 -15.46524 -15.06052 -14.92426 -14.70793 -14.43520 -14.28234 -13.97446 -13.69747 -13.63725 -13.38094 -13.15462 -12.96344 -12.62858 -12.36174 -12.23893 -12.04187 -11.83568 -11.70772 -11.50921 -11.11376 -11.04497 -10.95585 -10.91957 -10.89815 -10.84921 -10.69148 -10.22312 -10.07550 -9.84989 -9.59498 -9.46061 -9.38026 -9.23500 -8.94908 -8.51712 -8.39646 -6.92463 -5.74205 -3.12006 1.65971 2.26162 2.59665 2.81442 3.36924 3.39901 3.44999 3.46796 4.25416 4.33711 4.45379 4.46787 4.62958 4.80330 4.86212 4.88426 5.07741 5.11904 5.13988 5.16755 5.20431 5.34842 5.37098 5.42434 5.56065 5.64489 5.70150 5.73879 5.79231 5.83456 5.87420 5.96086 6.03955 6.06144 6.10669 6.11697 6.29263 6.32917 6.47343 6.52551 6.59338 6.67365 6.80113 6.80847 6.95499 6.99026 7.25883 7.50563 7.51888 7.72946 7.83028 8.15748 8.47071 9.09335 9.71891 10.52168 11.35505 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.002388 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.749554 B =11722.979055 C =12291.268657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.305 5.305 4 C 0.054 3.946 5 C -0.245 4.245 6 C 0.091 3.909 7 C -0.036 4.036 8 C -0.099 4.099 9 H 0.100 0.900 10 C 0.514 3.486 11 O -0.544 6.544 12 N -0.709 5.709 13 C 0.127 3.873 14 H 0.081 0.919 15 C -0.141 4.141 16 C 0.154 3.846 17 H 0.154 0.846 18 C -0.137 4.137 19 C -0.130 4.130 20 C 0.129 3.871 21 H 0.084 0.916 22 N -0.590 5.590 23 C -0.209 4.209 24 H 0.079 0.921 25 C -0.013 4.013 26 N -0.923 5.923 27 Si 0.916 3.084 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 C -0.111 4.111 32 C -0.036 4.036 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.182 0.818 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.395 0.605 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.253 0.747 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 21.692 -4.293 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 N -0.127 5.127 4 C -0.130 4.130 5 C -0.256 4.256 6 C -0.038 4.038 7 C -0.075 4.075 8 C -0.121 4.121 9 H 0.118 0.882 10 C 0.299 3.701 11 O -0.421 6.421 12 N -0.359 5.359 13 C 0.021 3.979 14 H 0.099 0.901 15 C -0.181 4.181 16 C 0.048 3.952 17 H 0.171 0.829 18 C -0.176 4.176 19 C -0.170 4.170 20 C 0.020 3.980 21 H 0.102 0.898 22 N -0.310 5.310 23 C -0.337 4.337 24 H 0.097 0.903 25 C -0.208 4.208 26 N -0.572 5.572 27 Si 0.747 3.253 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 C -0.149 4.149 32 C -0.074 4.074 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.199 0.801 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.525 22.114 -3.898 22.597 hybrid contribution 0.507 -1.142 0.241 1.273 sum -2.018 20.972 -3.657 21.384 Atomic orbital electron populations 1.21876 0.74342 1.04495 1.03556 1.48180 1.06474 1.03453 1.56806 1.77508 1.01582 1.07564 1.26009 1.23558 0.95185 0.94478 0.99806 1.19917 0.94158 0.93804 1.17749 1.20932 0.91092 0.90632 1.01096 1.20080 0.97501 0.85770 1.04144 1.21289 0.96495 0.91931 1.02406 0.88199 1.20362 0.84452 0.87353 0.77901 1.90700 1.23975 1.82584 1.44846 1.46238 1.17399 1.07267 1.65045 1.22656 0.99650 0.77399 0.98166 0.90122 1.23344 0.98326 0.97957 0.98432 1.23828 0.88123 0.96711 0.86575 0.82915 1.23045 0.98034 0.98008 0.98536 1.22918 0.97481 0.97351 0.99249 1.23176 0.94803 0.86116 0.93898 0.89767 1.46481 1.42108 0.99191 1.43232 1.19110 1.15935 0.83301 1.15320 0.90279 1.24697 0.99288 0.97294 0.99533 1.69446 1.31325 1.22053 1.34365 0.85959 0.77990 0.82838 0.78499 1.20557 1.21793 1.21814 1.21635 0.96130 0.96990 1.00180 1.19973 0.93941 0.91958 1.01578 0.90614 0.89307 0.89345 0.80148 0.89815 0.88539 0.77019 0.91644 0.92715 0.93662 0.92699 0.92994 0.93158 0.93622 0.90867 0.90542 0.91061 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.32 59.85 0.68 1.37 16 2 N -0.37 -3.94 4.00 -63.88 -0.26 -4.20 16 3 N -0.31 -3.65 12.59 30.55 0.38 -3.27 16 4 C 0.05 0.55 12.00 -17.48 -0.21 0.34 16 5 C -0.24 -2.46 5.91 -105.05 -0.62 -3.08 16 6 C 0.09 0.97 6.73 -82.33 -0.55 0.41 16 7 C -0.04 -0.36 4.63 -27.63 -0.13 -0.49 16 8 C -0.10 -0.98 2.49 -91.53 -0.23 -1.21 16 9 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 10 C 0.51 7.00 7.15 -10.98 -0.08 6.93 16 11 O -0.54 -9.62 15.55 5.56 0.09 -9.53 16 12 N -0.71 -9.55 3.45 -51.36 -0.18 -9.73 16 13 C 0.13 2.27 3.07 -65.40 -0.20 2.07 16 14 H 0.08 1.64 7.70 -51.93 -0.40 1.24 16 15 C -0.14 -2.56 6.23 -24.03 -0.15 -2.71 16 16 C 0.15 3.37 4.72 -62.57 -0.30 3.08 16 17 H 0.15 3.86 5.52 -51.93 -0.29 3.57 16 18 C -0.14 -2.53 6.44 -24.24 -0.16 -2.69 16 19 C -0.13 -2.30 6.32 -24.24 -0.15 -2.45 16 20 C 0.13 2.63 5.35 -62.77 -0.34 2.29 16 21 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 22 N -0.59 -14.39 2.99 -145.53 -0.43 -14.82 16 23 C -0.21 -5.69 10.59 -15.06 -0.16 -5.85 16 24 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.92 -25.87 10.47 55.49 0.58 -25.29 16 27 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 C -0.11 -0.97 5.18 -26.46 -0.14 -1.10 16 32 C -0.04 -0.28 6.28 -27.60 -0.17 -0.46 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.49 7.57 -51.93 -0.39 0.09 16 36 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.08 0.81 7.76 -51.93 -0.40 0.41 16 38 H 0.10 1.09 7.79 -51.93 -0.40 0.69 16 39 H 0.40 4.28 7.35 -40.82 -0.30 3.98 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.82 7.36 -51.92 -0.38 0.44 16 42 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.76 6.48 -51.93 -0.34 0.42 16 45 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 46 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 48 H 0.08 0.60 7.30 -51.93 -0.38 0.22 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -32.71 388.06 -9.88 -42.58 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.88 Total: 5.58 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.00 Total: -4.01 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.10 Total: -57.31 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.71 -9.88 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095921187.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.979 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds