Wall clock time and date at job start Wed Apr 1 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58931 * 2 1 4 4 C 1.53168 * 109.52760 * 239.82585 * 2 1 3 5 5 C 1.53199 * 109.56563 * 170.88078 * 4 2 1 6 6 N 1.46691 * 108.85653 * 50.56931 * 5 4 2 7 7 N 1.39622 * 127.23159 * 162.62920 * 6 5 4 8 8 C 1.30606 * 108.87242 * 180.02562 * 7 6 5 9 9 C 1.41465 * 108.07232 * 359.97438 * 8 7 6 10 10 C 1.47430 * 126.48681 * 180.02562 * 9 8 7 11 11 O 1.21602 * 119.99803 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00178 * 359.95828 * 10 9 8 13 13 C 1.46500 * 120.00493 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.55341 * 33.22250 * 13 12 10 15 15 C 1.54848 * 110.62995 * 156.12387 * 13 12 10 16 16 C 1.55841 * 103.44596 * 118.48838 * 15 13 12 17 17 H 1.09004 * 115.56226 * 158.81197 * 16 15 13 18 18 C 1.55845 * 105.06541 * 287.42240 * 16 15 13 19 19 C 1.54857 * 103.44479 * 71.82526 * 18 16 15 20 20 C 1.55848 * 110.62439 * 270.15347 * 13 12 10 21 21 H 1.09000 * 115.56002 * 81.93959 * 20 13 12 22 22 N 1.50238 * 101.04963 * 32.93907 * 16 15 13 23 23 C 1.36934 * 130.84223 * 126.03139 * 22 16 15 24 24 H 1.07996 * 120.00884 * 180.02562 * 23 22 16 25 25 C 1.38820 * 119.99614 * 0.02656 * 23 22 16 26 26 N 1.31614 * 120.00124 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99938 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46823 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47228 * 119.99519 * 27 25 23 30 30 H 1.48496 * 109.46817 * 239.99706 * 27 25 23 31 31 C 1.34597 * 124.42899 * 342.65789 * 6 5 4 32 32 C 1.50805 * 124.58064 * 359.90670 * 31 6 5 33 33 H 1.09002 * 109.47023 * 299.81359 * 1 2 3 34 34 H 1.08998 * 109.47359 * 59.80859 * 1 2 3 35 35 H 1.08998 * 109.47198 * 179.81114 * 1 2 3 36 36 H 1.09002 * 109.45433 * 290.89212 * 4 2 1 37 37 H 1.08996 * 109.45871 * 50.84370 * 4 2 1 38 38 H 1.08997 * 109.55220 * 290.77448 * 5 4 2 39 39 H 1.09000 * 109.59566 * 170.39100 * 5 4 2 40 40 H 1.08006 * 125.96213 * 179.97438 * 8 7 6 41 41 H 0.97003 * 119.99814 * 359.97438 * 12 10 9 42 42 H 1.08992 * 110.62650 * 236.98212 * 15 13 12 43 43 H 1.09001 * 110.62565 * 359.97438 * 15 13 12 44 44 H 1.08996 * 110.62644 * 190.31107 * 18 16 15 45 45 H 1.09000 * 110.62485 * 313.33456 * 18 16 15 46 46 H 1.09001 * 110.62515 * 118.49099 * 19 18 16 47 47 H 1.09001 * 110.62712 * 241.35480 * 19 18 16 48 48 H 0.97002 * 120.00388 * 180.02562 * 26 25 23 49 49 H 1.09008 * 109.71935 * 103.94877 * 32 31 6 50 50 H 1.08993 * 109.72067 * 224.60186 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0420 -0.7256 -1.2480 5 6 3.5568 -0.5314 -1.3691 6 7 4.1828 -0.8750 -0.0878 7 7 5.5295 -1.1606 0.1448 8 6 5.6935 -1.4190 1.4145 9 6 4.4355 -1.3054 2.0514 10 6 4.1564 -1.5123 3.4842 11 8 3.0240 -1.3827 3.9080 12 7 5.1563 -1.8453 4.3244 13 6 4.8790 -2.0514 5.7480 14 1 3.8834 -2.4727 5.8869 15 6 5.9526 -2.9668 6.3860 16 6 6.6042 -2.0587 7.4720 17 1 7.1246 -2.5833 8.2734 18 6 7.4601 -1.0271 6.6771 19 6 6.3998 -0.1053 6.0259 20 6 5.0280 -0.7147 6.5355 21 1 4.1649 -0.0500 6.5012 22 7 5.4286 -1.2226 7.8915 23 6 4.8884 -0.9937 9.1287 24 1 4.0266 -0.3509 9.2314 25 6 5.4484 -1.5881 10.2513 26 7 6.4983 -2.3719 10.1263 27 14 4.7111 -1.2765 11.9392 28 1 3.5448 -0.3665 11.8094 29 1 4.2709 -2.5646 12.5325 30 1 5.7319 -0.6502 12.8172 31 6 3.5225 -0.9661 1.0816 32 6 2.0430 -0.7271 1.2500 33 1 -0.3633 0.5109 0.8917 34 1 -0.3634 0.5168 -0.8882 35 1 -0.3633 -1.0276 -0.0034 36 1 1.8179 -1.7892 -1.1671 37 1 1.5517 -0.3177 -2.1319 38 1 3.7728 0.5086 -1.6138 39 1 3.9472 -1.1814 -2.1521 40 1 6.6267 -1.6747 1.8944 41 1 6.0595 -1.9492 3.9862 42 1 5.4892 -3.8407 6.8438 43 1 6.6912 -3.2679 5.6431 44 1 8.1006 -0.4588 7.3515 45 1 8.0542 -1.5286 5.9132 46 1 6.5145 0.9201 6.3773 47 1 6.4698 -0.1475 4.9390 48 1 6.8895 -2.7875 10.9107 49 1 1.5265 -1.6809 1.3587 50 1 1.8681 -0.1109 2.1318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096449271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:56 Heat of formation + Delta-G solvation = 56.948888 kcal Electronic energy + Delta-G solvation = -30895.670837 eV Core-core repulsion = 26924.323687 eV Total energy + Delta-G solvation = -3971.347150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71786 -41.18107 -39.40947 -38.11821 -35.37720 -34.21201 -33.89144 -32.10617 -31.03049 -30.84241 -30.04139 -28.84998 -27.62275 -26.13632 -24.92185 -23.56550 -22.85966 -22.38567 -21.49483 -20.89860 -20.23172 -19.82903 -18.95506 -18.47581 -16.93226 -16.90257 -16.71592 -16.48317 -16.15457 -15.88021 -15.80198 -15.50036 -15.24281 -14.89039 -14.74379 -14.60859 -14.02135 -13.91901 -13.76241 -13.44644 -13.33361 -13.17312 -13.07365 -12.85083 -12.78242 -12.59350 -12.56234 -12.31810 -12.26127 -11.96489 -11.91576 -11.85086 -11.67897 -11.53628 -11.49514 -11.14019 -11.01824 -10.76082 -10.71881 -10.33833 -9.99404 -9.56897 -8.82401 -7.77770 -5.17076 0.52607 1.17757 1.37040 1.47261 1.47672 1.57568 2.34086 2.52251 2.54077 3.34587 3.36492 3.47304 3.57294 3.64226 3.67501 3.89809 4.01334 4.07510 4.14412 4.18483 4.25236 4.28440 4.38768 4.45488 4.51009 4.60257 4.63068 4.65646 4.69299 4.74081 4.79755 4.83299 4.86352 4.92368 5.00937 5.07392 5.10167 5.11495 5.19090 5.28272 5.29615 5.36674 5.40836 5.43698 5.49215 5.59765 5.80725 5.89060 5.92089 6.30037 6.54197 6.78572 7.07743 7.43717 7.71051 8.57694 9.29140 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002571 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.438350 B =10889.522121 C =11839.232926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.126 4.126 5 C 0.120 3.880 6 N -0.358 5.358 7 N -0.317 5.317 8 C 0.086 3.914 9 C -0.314 4.314 10 C 0.591 3.409 11 O -0.589 6.589 12 N -0.695 5.695 13 C 0.150 3.850 14 H 0.054 0.946 15 C -0.127 4.127 16 C 0.139 3.861 17 H 0.119 0.881 18 C -0.126 4.126 19 C -0.117 4.117 20 C 0.118 3.882 21 H 0.067 0.933 22 N -0.617 5.617 23 C -0.223 4.223 24 H 0.071 0.929 25 C -0.064 4.064 26 N -0.944 5.944 27 Si 0.975 3.025 28 H -0.274 1.274 29 H -0.292 1.292 30 H -0.291 1.291 31 C 0.154 3.846 32 C -0.054 4.054 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.217 0.783 41 H 0.410 0.590 42 H 0.045 0.955 43 H 0.096 0.904 44 H 0.034 0.966 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.086 0.914 48 H 0.249 0.751 49 H 0.091 0.909 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 2.719 -27.913 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.164 4.164 5 C 0.001 3.999 6 N -0.138 5.138 7 N -0.135 5.135 8 C -0.101 4.101 9 C -0.328 4.328 10 C 0.380 3.620 11 O -0.471 6.471 12 N -0.346 5.346 13 C 0.043 3.957 14 H 0.072 0.928 15 C -0.166 4.166 16 C 0.033 3.967 17 H 0.137 0.863 18 C -0.166 4.166 19 C -0.156 4.156 20 C 0.010 3.990 21 H 0.086 0.914 22 N -0.338 5.338 23 C -0.352 4.352 24 H 0.089 0.911 25 C -0.257 4.257 26 N -0.593 5.593 27 Si 0.805 3.195 28 H -0.199 1.199 29 H -0.219 1.219 30 H -0.218 1.218 31 C 0.020 3.980 32 C -0.093 4.093 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.234 0.766 41 H 0.248 0.752 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.053 0.947 45 H 0.107 0.893 46 H 0.058 0.942 47 H 0.105 0.895 48 H 0.058 0.942 49 H 0.109 0.891 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.235 2.919 -28.613 29.234 hybrid contribution -0.244 -0.032 2.259 2.273 sum -5.479 2.887 -26.353 27.071 Atomic orbital electron populations 1.21774 0.92697 1.02667 1.02853 1.21324 0.97729 0.99492 0.92846 0.90333 1.22088 0.91842 1.02400 1.00064 1.22327 0.93405 1.03406 0.80783 1.48917 1.05211 1.51672 1.08047 1.77043 0.94696 1.23746 1.18060 1.24522 0.98577 0.96565 0.90481 1.19854 0.95050 1.24153 0.93787 1.17521 0.84217 0.75404 0.84884 1.90721 1.23255 1.54242 1.78899 1.45693 1.11383 1.70267 1.07244 1.22042 0.98089 0.96558 0.79005 0.92798 1.23134 0.97688 0.97137 0.98681 1.23636 0.88141 0.91146 0.93732 0.86333 1.22935 0.96940 0.98023 0.98662 1.23251 0.95015 0.97698 0.99650 1.23803 0.95757 0.94357 0.85089 0.91441 1.46679 1.32500 1.53992 1.00636 1.19338 1.09161 1.23150 0.83525 0.91095 1.25414 0.99073 1.00437 1.00745 1.69679 1.25004 1.36382 1.28281 0.85039 0.77454 0.77003 0.80026 1.19868 1.21904 1.21844 1.21659 0.96197 0.94283 0.85830 1.20668 0.85892 1.02554 1.00199 0.92857 0.90306 0.92126 0.90702 0.85548 0.88089 0.87198 0.76642 0.75212 0.93599 0.88600 0.94679 0.89298 0.94187 0.89549 0.94159 0.89087 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.17 71.98 0.66 -0.71 16 2 C -0.10 -1.13 2.76 -10.59 -0.03 -1.16 16 3 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 4 C -0.13 -0.95 5.23 30.72 0.16 -0.79 16 5 C 0.12 1.28 7.27 86.41 0.63 1.91 16 6 N -0.36 -7.15 4.01 -332.39 -1.33 -8.48 16 7 N -0.32 -7.21 12.54 -56.07 -0.70 -7.91 16 8 C 0.09 1.85 11.51 85.67 0.99 2.84 16 9 C -0.31 -8.24 6.12 -20.25 -0.12 -8.36 16 10 C 0.59 18.87 7.81 86.66 0.68 19.55 16 11 O -0.59 -23.30 15.08 -4.04 -0.06 -23.37 16 12 N -0.69 -20.31 3.72 -438.16 -1.63 -21.94 16 13 C 0.15 5.69 3.14 46.61 0.15 5.84 16 14 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 15 C -0.13 -4.76 6.20 32.21 0.20 -4.56 16 16 C 0.14 6.34 4.67 46.23 0.22 6.55 16 17 H 0.12 6.30 5.52 -2.38 -0.01 6.29 16 18 C -0.13 -4.69 6.45 32.21 0.21 -4.48 16 19 C -0.12 -4.19 6.40 33.20 0.21 -3.98 16 20 C 0.12 5.09 5.47 47.22 0.26 5.35 16 21 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 22 N -0.62 -31.78 3.00 -610.09 -1.83 -33.62 16 23 C -0.22 -12.79 10.59 84.04 0.89 -11.90 16 24 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 25 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 26 N -0.94 -55.39 10.46 21.65 0.23 -55.16 16 27 Si 0.98 46.72 29.55 68.60 2.03 48.74 16 28 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 30 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 31 C 0.15 3.61 6.66 41.98 0.28 3.89 16 32 C -0.05 -1.10 4.69 30.03 0.14 -0.96 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 37 H 0.13 0.20 8.12 -2.39 -0.02 0.18 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.22 3.05 7.51 -2.91 -0.02 3.03 16 41 H 0.41 9.10 6.84 -92.71 -0.63 8.46 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.10 2.77 7.37 -2.39 -0.02 2.76 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 45 H 0.09 2.54 7.81 -2.39 -0.02 2.52 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 2.50 6.42 -2.39 -0.02 2.49 16 48 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.09 1.89 8.11 -2.38 -0.02 1.87 16 50 H 0.08 2.10 7.46 -2.39 -0.02 2.08 16 Total: -1.00 -75.07 387.71 2.99 -72.08 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.32 Total: 23.83 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.98 Total: 5.82 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -5.27 Total: -127.11 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -75.07 2.99 -72.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096449271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.027 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds