Wall clock time and date at job start Wed Apr 1 2020 03:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47365 * 2 1 4 4 N 1.28436 * 125.19194 * 269.50471 * 3 2 1 5 5 C 1.30869 * 110.92759 * 180.28008 * 4 3 2 6 6 C 1.50706 * 126.06983 * 179.75346 * 5 4 3 7 7 C 1.52994 * 117.49682 * 163.70507 * 6 5 4 8 8 C 1.52990 * 117.49961 * 95.04410 * 6 5 4 9 9 C 1.39672 * 107.85847 * 359.71278 * 5 4 3 10 10 C 1.36601 * 125.18925 * 89.29363 * 3 2 1 11 11 C 1.47165 * 126.88311 * 359.97438 * 10 3 2 12 12 O 1.21633 * 120.00134 * 4.50457 * 11 10 3 13 13 N 1.34774 * 119.99790 * 184.50018 * 11 10 3 14 14 C 1.46501 * 119.99578 * 174.99219 * 13 11 10 15 15 H 1.08998 * 110.56738 * 32.09900 * 14 13 11 16 16 C 1.54858 * 110.62399 * 269.02211 * 14 13 11 17 17 C 1.55844 * 103.44731 * 241.51131 * 16 14 13 18 18 H 1.09003 * 116.12901 * 159.15044 * 17 16 14 19 19 C 1.55850 * 105.06376 * 288.17684 * 17 16 14 20 20 C 1.54851 * 103.44500 * 71.82478 * 19 17 16 21 21 C 1.55844 * 110.62701 * 155.00490 * 14 13 11 22 22 H 1.09005 * 115.55840 * 319.67198 * 21 14 13 23 23 N 1.50231 * 101.05426 * 85.54711 * 21 14 13 24 24 C 1.36942 * 130.83706 * 233.94519 * 23 21 14 25 25 H 1.08001 * 119.99832 * 171.72121 * 24 23 21 26 26 C 1.38810 * 120.00452 * 351.72567 * 24 23 21 27 27 N 1.31617 * 119.99879 * 160.92243 * 26 24 23 28 28 Si 1.86797 * 119.99663 * 340.92911 * 26 24 23 29 29 H 1.48503 * 109.47467 * 88.06651 * 28 26 24 30 30 H 1.48496 * 109.47090 * 208.06434 * 28 26 24 31 31 H 1.48495 * 109.47445 * 328.06660 * 28 26 24 32 32 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46837 * 299.99836 * 1 2 3 34 34 H 1.08997 * 109.46810 * 59.99736 * 1 2 3 35 35 H 1.09002 * 109.46990 * 239.99795 * 2 1 3 36 36 H 1.09002 * 109.47008 * 120.00715 * 2 1 3 37 37 H 1.09001 * 115.54679 * 309.37401 * 6 5 4 38 38 H 1.08996 * 117.50278 * 359.97438 * 7 6 5 39 39 H 1.09003 * 117.49870 * 145.01577 * 7 6 5 40 40 H 1.09007 * 117.50163 * 214.97819 * 8 6 5 41 41 H 1.09005 * 117.50042 * 359.97438 * 8 6 5 42 42 H 1.08003 * 127.31730 * 179.97438 * 9 5 4 43 43 H 0.97000 * 120.00355 * 354.99066 * 13 11 10 44 44 H 1.08992 * 110.62839 * 0.02562 * 16 14 13 45 45 H 1.09011 * 110.62284 * 123.02648 * 16 14 13 46 46 H 1.09001 * 110.62071 * 190.31409 * 19 17 16 47 47 H 1.08994 * 110.62855 * 313.17408 * 19 17 16 48 48 H 1.08992 * 110.62968 * 241.50655 * 20 19 17 49 49 H 1.08997 * 110.62498 * 118.48499 * 20 19 17 50 50 H 0.97001 * 119.99486 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2737 2.0760 -1.0496 5 6 2.6995 3.2707 -0.7271 6 6 3.1009 4.3593 -1.6890 7 6 3.2023 5.7841 -1.1409 8 6 2.0418 5.3986 -2.0615 9 6 2.7151 3.3581 0.6668 10 6 2.2678 2.1279 1.1163 11 6 2.1001 1.7068 2.5164 12 8 1.7791 0.5619 2.7728 13 7 2.3021 2.5896 3.5144 14 6 2.0293 2.2028 4.9009 15 1 2.2261 1.1409 5.0479 16 6 0.5702 2.5494 5.2869 17 6 0.7364 3.5688 6.4539 18 1 -0.1201 4.2124 6.6547 19 6 1.2397 2.7228 7.6621 20 6 2.6988 2.3763 7.2761 21 6 2.8783 3.0601 5.8872 22 1 3.9051 3.2549 5.5773 23 7 2.0013 4.2695 6.0461 24 6 2.2717 5.6007 5.8731 25 1 1.4698 6.3234 5.9060 26 6 3.5765 6.0214 5.6554 27 7 3.8068 7.2039 5.1252 28 14 5.0053 4.9092 6.1146 29 1 5.3230 4.0144 4.9729 30 1 6.1936 5.7385 6.4392 31 1 4.6352 4.0905 7.2969 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5140 0.8899 37 1 3.8113 4.0654 -2.4616 38 1 2.9784 5.9343 -0.0848 39 1 3.9794 6.4278 -1.5533 40 1 2.0556 5.7889 -3.0792 41 1 1.0545 5.2948 -1.6113 42 1 3.0133 4.2054 1.2664 43 1 2.6282 3.4811 3.3148 44 1 0.0495 3.0086 4.4467 45 1 0.0413 1.6590 5.6272 46 1 1.2145 3.3108 8.5795 47 1 0.6435 1.8170 7.7715 48 1 2.8280 1.2973 7.1924 49 1 3.3972 2.7925 8.0021 50 1 4.7186 7.4976 4.9727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097294748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:27 Heat of formation + Delta-G solvation = 122.208714 kcal Electronic energy + Delta-G solvation = -31485.783570 eV Core-core repulsion = 27517.266298 eV Total energy + Delta-G solvation = -3968.517272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52288 -40.04743 -38.50487 -37.20724 -34.54480 -33.72552 -32.66143 -31.01324 -29.74474 -29.67394 -29.30271 -28.17100 -24.62125 -24.14933 -23.68304 -22.49571 -22.27695 -21.20738 -20.42604 -20.17872 -19.27878 -18.94858 -17.76673 -17.15789 -16.31217 -16.22194 -15.94996 -15.59107 -14.86518 -14.65046 -14.53667 -14.26065 -14.10023 -13.91441 -13.55532 -13.41753 -13.13808 -12.78665 -12.67358 -12.34820 -12.22437 -11.93675 -11.67952 -11.51967 -11.47525 -11.38133 -11.20771 -11.07777 -11.01053 -10.95193 -10.61476 -10.44402 -10.33625 -10.21092 -10.05610 -9.73388 -9.57596 -9.33416 -9.09372 -8.98700 -8.75180 -8.61522 -7.34137 -5.99629 -3.27466 1.37340 2.39428 2.54268 3.19606 3.36013 3.37176 3.41157 3.45578 3.85504 4.34841 4.43022 4.55363 4.69656 4.78227 4.87735 4.90550 4.98853 5.07751 5.15857 5.24248 5.24804 5.29156 5.32121 5.49424 5.53376 5.55587 5.62120 5.66693 5.70761 5.73640 5.80302 5.84404 5.89222 5.94084 5.95168 5.97210 6.10948 6.14341 6.16518 6.19655 6.35768 6.40991 6.53901 6.59363 6.66613 6.79339 6.80404 6.91729 7.26504 7.76241 8.14347 8.23385 8.36142 8.63478 9.55777 10.14576 11.16740 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.004371 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.533963 B = 6404.667236 C = 8279.216546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.256 5.256 4 N -0.274 5.274 5 C 0.054 3.946 6 C -0.074 4.074 7 C -0.165 4.165 8 C -0.167 4.167 9 C -0.177 4.177 10 C -0.034 4.034 11 C 0.589 3.411 12 O -0.554 6.554 13 N -0.690 5.690 14 C 0.132 3.868 15 H 0.090 0.910 16 C -0.137 4.137 17 C 0.141 3.859 18 H 0.097 0.903 19 C -0.133 4.133 20 C -0.133 4.133 21 C 0.110 3.890 22 H 0.097 0.903 23 N -0.606 5.606 24 C -0.225 4.225 25 H 0.100 0.900 26 C 0.017 3.983 27 N -0.913 5.913 28 Si 0.871 3.129 29 H -0.289 1.289 30 H -0.304 1.304 31 H -0.264 1.264 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.163 0.837 43 H 0.411 0.589 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -10.730 -8.889 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.044 5.044 4 N -0.107 5.107 5 C -0.103 4.103 6 C -0.094 4.094 7 C -0.202 4.202 8 C -0.205 4.205 9 C -0.206 4.206 10 C -0.162 4.162 11 C 0.374 3.626 12 O -0.434 6.434 13 N -0.339 5.339 14 C 0.026 3.974 15 H 0.108 0.892 16 C -0.177 4.177 17 C 0.034 3.966 18 H 0.115 0.885 19 C -0.172 4.172 20 C -0.173 4.173 21 C 0.003 3.997 22 H 0.115 0.885 23 N -0.329 5.329 24 C -0.351 4.351 25 H 0.117 0.883 26 C -0.181 4.181 27 N -0.557 5.557 28 Si 0.705 3.295 29 H -0.218 1.218 30 H -0.233 1.233 31 H -0.189 1.189 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.180 0.820 43 H 0.248 0.752 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.757 -12.032 -9.641 16.136 hybrid contribution 1.347 0.399 0.831 1.632 sum -3.410 -11.633 -8.810 14.986 Atomic orbital electron populations 1.22074 0.93639 1.03279 1.03062 1.22155 0.96084 0.76679 1.05656 1.45716 1.45059 1.12109 1.01501 1.73020 1.18361 1.05739 1.13579 1.20957 1.04123 0.92618 0.92553 1.20000 1.02853 0.86971 0.99553 1.23065 1.00859 0.95572 1.00735 1.22981 0.94922 1.02122 1.00502 1.22205 1.06165 0.97348 0.94846 1.21441 1.11171 0.93635 0.89927 1.16909 0.77449 0.85135 0.83057 1.90716 1.49672 1.18493 1.84486 1.45754 1.65340 1.16580 1.06268 1.22602 0.96351 0.98941 0.79507 0.89212 1.23371 0.95471 0.99078 0.99828 1.22962 0.90532 0.91378 0.91714 0.88476 1.22995 0.95795 0.99122 0.99323 1.23030 0.97607 0.98848 0.97804 1.23483 0.95108 0.87658 0.93436 0.88530 1.46921 1.06512 1.00921 1.78503 1.18682 0.94137 0.79705 1.42572 0.88278 1.24693 0.96630 0.96078 1.00678 1.69778 1.20318 1.20180 1.45451 0.87170 0.83270 0.79536 0.79567 1.21789 1.23255 1.18899 0.90246 0.91563 0.92021 0.88682 0.86468 0.86645 0.87755 0.88088 0.88489 0.88735 0.81966 0.75224 0.91555 0.91615 0.92072 0.92301 0.92199 0.91293 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 10.24 37.16 0.38 -1.36 16 2 C 0.11 1.37 6.54 -4.04 -0.03 1.34 16 3 N -0.26 -3.85 3.35 -57.14 -0.19 -4.04 16 4 N -0.27 -4.24 11.90 33.64 0.40 -3.84 16 5 C 0.05 0.80 6.85 -82.46 -0.57 0.23 16 6 C -0.07 -0.91 6.33 -91.78 -0.58 -1.49 16 7 C -0.16 -1.87 10.03 -26.70 -0.27 -2.14 16 8 C -0.17 -1.82 10.24 -26.70 -0.27 -2.10 16 9 C -0.18 -2.78 9.78 -38.99 -0.38 -3.16 16 10 C -0.03 -0.55 6.96 -82.06 -0.57 -1.12 16 11 C 0.59 10.15 7.79 -12.64 -0.10 10.05 16 12 O -0.55 -10.01 14.30 5.25 0.08 -9.93 16 13 N -0.69 -12.19 5.06 -52.55 -0.27 -12.46 16 14 C 0.13 2.32 2.84 -65.43 -0.19 2.13 16 15 H 0.09 1.54 7.16 -51.93 -0.37 1.16 16 16 C -0.14 -2.25 6.23 -24.23 -0.15 -2.40 16 17 C 0.14 2.49 5.48 -62.80 -0.34 2.15 16 18 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 19 C -0.13 -2.10 6.44 -24.23 -0.16 -2.26 16 20 C -0.13 -2.29 6.23 -24.23 -0.15 -2.44 16 21 C 0.11 2.18 3.14 -62.80 -0.20 1.98 16 22 H 0.10 2.10 3.14 -51.93 -0.16 1.93 16 23 N -0.61 -13.11 2.86 -145.82 -0.42 -13.52 16 24 C -0.22 -5.82 10.97 -15.06 -0.17 -5.98 16 25 H 0.10 2.76 8.06 -52.49 -0.42 2.33 16 26 C 0.02 0.45 5.50 -17.43 -0.10 0.36 16 27 N -0.91 -26.46 13.97 55.49 0.78 -25.68 16 28 Si 0.87 21.00 24.58 -169.99 -4.18 16.82 16 29 H -0.29 -6.78 6.63 56.52 0.37 -6.41 16 30 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 31 H -0.26 -6.06 5.04 56.52 0.28 -5.77 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.12 1.49 6.26 -51.93 -0.33 1.16 16 37 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.10 1.32 7.22 -51.93 -0.37 0.94 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.16 2.47 7.01 -52.48 -0.37 2.10 16 43 H 0.41 7.62 7.69 -40.82 -0.31 7.31 16 44 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 45 H 0.07 0.95 7.82 -51.92 -0.41 0.54 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 48 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 49 H 0.07 1.27 6.70 -51.93 -0.35 0.92 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -30.12 390.78 -9.57 -39.69 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.83 Total: 13.27 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.83 Total: -6.20 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.30 Total: -59.54 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.18 Total: 16.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.12 -9.57 -39.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097294748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.899 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds