Wall clock time and date at job start Wed Apr 1 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46526 * 2 1 4 4 C 1.53103 * 109.45617 * 119.98370 * 2 1 3 5 5 C 1.53405 * 109.64600 * 190.05885 * 4 2 1 6 6 C 1.50717 * 108.33279 * 309.97931 * 5 4 2 7 7 N 1.34313 * 128.90588 * 196.68950 * 6 5 4 8 8 H 0.96997 * 124.97949 * 359.82024 * 7 6 5 9 9 N 1.28841 * 110.03806 * 179.59951 * 7 6 5 10 10 C 1.32205 * 110.15640 * 0.48204 * 9 7 6 11 11 C 1.47707 * 126.68387 * 179.86417 * 10 9 7 12 12 O 1.21574 * 120.00100 * 179.69247 * 11 10 9 13 13 N 1.34777 * 119.99749 * 359.68659 * 11 10 9 14 14 C 1.46501 * 119.99916 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.68158 * 32.01349 * 14 13 11 16 16 C 1.54845 * 110.62633 * 269.02524 * 14 13 11 17 17 C 1.57786 * 103.27506 * 240.98902 * 16 14 13 18 18 H 1.09000 * 115.64584 * 158.98378 * 17 16 14 19 19 C 1.55840 * 105.80166 * 289.04208 * 17 16 14 20 20 C 1.54226 * 103.56505 * 71.16334 * 19 17 16 21 21 C 1.55843 * 110.62608 * 154.99888 * 14 13 11 22 22 H 1.08995 * 115.56456 * 319.67615 * 21 14 13 23 23 N 1.50234 * 100.16139 * 33.70598 * 17 16 14 24 24 C 1.36935 * 130.83910 * 125.52902 * 23 17 16 25 25 H 1.08000 * 120.00518 * 179.38894 * 24 23 17 26 26 C 1.38817 * 119.99990 * 359.65545 * 24 23 17 27 27 N 1.31617 * 119.99869 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99909 * 179.97438 * 26 24 23 29 29 H 1.48508 * 109.46676 * 90.00727 * 28 26 24 30 30 H 1.48502 * 109.46977 * 210.00025 * 28 26 24 31 31 H 1.48494 * 109.47494 * 330.00753 * 28 26 24 32 32 C 1.35580 * 123.87420 * 16.64768 * 6 5 4 33 33 C 1.50375 * 124.62320 * 0.23729 * 32 6 5 34 34 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46660 * 299.98227 * 1 2 3 36 36 H 1.09000 * 109.47058 * 59.98264 * 1 2 3 37 37 H 1.09005 * 109.44027 * 310.10633 * 4 2 1 38 38 H 1.08996 * 109.44740 * 70.00265 * 4 2 1 39 39 H 1.09003 * 109.69351 * 69.68731 * 5 4 2 40 40 H 1.08998 * 109.69153 * 190.22914 * 5 4 2 41 41 H 0.96994 * 120.00004 * 0.02562 * 13 11 10 42 42 H 1.09000 * 110.62892 * 0.02562 * 16 14 13 43 43 H 1.09011 * 110.62722 * 123.02175 * 16 14 13 44 44 H 1.09005 * 110.62679 * 189.56153 * 19 17 16 45 45 H 1.08994 * 110.63011 * 312.42613 * 19 17 16 46 46 H 1.08998 * 110.64392 * 241.43639 * 20 19 17 47 47 H 1.08997 * 110.50152 * 118.48865 * 20 19 17 48 48 H 0.96996 * 119.99743 * 179.97438 * 27 26 24 49 49 H 1.09007 * 109.70076 * 135.95221 * 33 32 6 50 50 H 1.09003 * 109.69865 * 256.51303 * 33 32 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2504 5 6 3.5531 -0.5091 1.3873 6 6 4.1998 -0.8413 0.0671 7 7 5.4918 -1.0934 -0.1996 8 1 6.2059 -1.0907 0.4569 9 7 5.6429 -1.3439 -1.4544 10 6 4.4803 -1.2623 -2.0784 11 6 4.2350 -1.4773 -3.5190 12 8 3.1088 -1.3762 -3.9656 13 7 5.2598 -1.7855 -4.3383 14 6 5.0167 -1.9982 -5.7673 15 1 4.1949 -1.3723 -6.1153 16 6 4.7246 -3.4915 -6.0546 17 6 5.8883 -3.9059 -7.0363 18 1 6.0985 -4.9739 -7.0946 19 6 5.5782 -3.1928 -8.3869 20 6 5.8635 -1.7074 -8.0854 21 6 6.3087 -1.7165 -6.5919 22 1 6.8934 -0.8547 -6.2702 23 7 7.0010 -3.0471 -6.5059 24 6 8.2606 -3.3753 -6.0807 25 1 8.9329 -2.6032 -5.7369 26 6 8.6755 -4.7000 -6.0969 27 7 7.8583 -5.6403 -6.5213 28 14 10.3940 -5.1475 -5.5175 29 1 10.3663 -5.4334 -4.0604 30 1 10.8653 -6.3509 -6.2491 31 1 11.3165 -4.0144 -5.7821 32 6 3.5223 -0.9373 -1.1033 33 6 2.0414 -0.7231 -1.2533 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3632 0.5136 0.8902 36 1 -0.3633 0.5141 -0.8898 37 1 1.5365 -0.3217 2.1307 38 1 1.8295 -1.7875 1.1655 39 1 3.7564 0.5304 1.6446 40 1 3.9470 -1.1636 2.1649 41 1 6.1582 -1.8665 -3.9819 42 1 4.7602 -4.0738 -5.1338 43 1 3.7580 -3.6063 -6.5452 44 1 6.2393 -3.5562 -9.1737 45 1 4.5347 -3.3370 -8.6666 46 1 4.9615 -1.1091 -8.2135 47 1 6.6657 -1.3357 -8.7229 48 1 8.1483 -6.5659 -6.5329 49 1 1.8458 -0.1129 -2.1352 50 1 1.5393 -1.6854 -1.3537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098133323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:15 Heat of formation + Delta-G solvation = 63.657782 kcal Electronic energy + Delta-G solvation = -30923.096462 eV Core-core repulsion = 26952.040231 eV Total energy + Delta-G solvation = -3971.056231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.82819 -39.52317 -38.06557 -37.70239 -33.68390 -32.78518 -32.43083 -31.65309 -29.82628 -29.05814 -28.66602 -27.65397 -26.55913 -24.33165 -23.74207 -23.56206 -21.49486 -20.90988 -19.74590 -19.52347 -19.10082 -18.55336 -17.75790 -16.94679 -16.62214 -15.97010 -15.55620 -14.93224 -14.76696 -14.54128 -14.13980 -14.11895 -13.87079 -13.65682 -13.43237 -13.28716 -13.22978 -12.68752 -12.57265 -12.25998 -12.00199 -11.84571 -11.76824 -11.21430 -11.12170 -11.04709 -10.88963 -10.87493 -10.87020 -10.73333 -10.54540 -10.43273 -10.29267 -10.05691 -9.87339 -9.73430 -9.28568 -9.21730 -9.08747 -8.91713 -8.64978 -8.32556 -6.89396 -5.69974 -3.08389 1.72098 2.10929 2.80224 3.39176 3.44031 3.45888 3.67375 3.77427 4.33505 4.45057 4.45873 4.55222 4.68877 4.87060 5.02849 5.14549 5.17976 5.27481 5.33460 5.40091 5.48469 5.53295 5.61722 5.64945 5.71687 5.77014 5.77719 5.81024 5.93270 5.97306 6.00279 6.11592 6.17436 6.20026 6.25941 6.26491 6.38054 6.47594 6.49450 6.55607 6.68337 6.80143 6.88590 6.96243 7.02533 7.19532 7.38451 7.52423 7.82113 7.84584 8.18824 8.22553 8.71117 9.12151 9.75216 10.56594 11.39200 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.003037 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.199012 B = 9216.108982 C =10604.323969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.109 4.109 5 C -0.045 4.045 6 C 0.002 3.998 7 N -0.376 5.376 8 H 0.443 0.557 9 N -0.256 5.256 10 C 0.001 3.999 11 C 0.597 3.403 12 O -0.544 6.544 13 N -0.690 5.690 14 C 0.129 3.871 15 H 0.081 0.919 16 C -0.144 4.144 17 C 0.154 3.846 18 H 0.153 0.847 19 C -0.137 4.137 20 C -0.126 4.126 21 C 0.125 3.875 22 H 0.086 0.914 23 N -0.591 5.591 24 C -0.211 4.211 25 H 0.078 0.922 26 C -0.011 4.011 27 N -0.920 5.920 28 Si 0.914 3.086 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.283 1.283 32 C -0.144 4.144 33 C -0.035 4.035 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.409 0.591 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.253 0.747 49 H 0.084 0.916 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 11.204 14.540 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.084 4.084 6 C -0.125 4.125 7 N -0.089 5.089 8 H 0.287 0.713 9 N -0.092 5.092 10 C -0.159 4.159 11 C 0.380 3.620 12 O -0.420 6.420 13 N -0.339 5.339 14 C 0.023 3.977 15 H 0.099 0.901 16 C -0.184 4.184 17 C 0.048 3.952 18 H 0.170 0.830 19 C -0.176 4.176 20 C -0.166 4.166 21 C 0.016 3.984 22 H 0.104 0.896 23 N -0.312 5.312 24 C -0.339 4.339 25 H 0.095 0.905 26 C -0.206 4.206 27 N -0.568 5.568 28 Si 0.745 3.255 29 H -0.218 1.218 30 H -0.218 1.218 31 H -0.208 1.208 32 C -0.154 4.154 33 C -0.073 4.073 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.244 0.756 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.365 10.828 14.014 20.521 hybrid contribution 1.121 -0.177 1.014 1.522 sum -9.244 10.651 15.028 20.610 Atomic orbital electron populations 1.21813 0.94785 1.02042 1.01710 1.21267 0.95721 0.99684 0.94522 0.91041 1.21631 0.93296 1.01607 0.98218 1.20196 0.95511 1.01938 0.90785 1.21130 0.85112 1.08074 0.98151 1.42984 1.08088 1.50712 1.07080 0.71297 1.73949 1.24910 1.19002 0.91340 1.21785 0.89989 1.08570 0.95583 1.16882 0.85033 0.77141 0.82903 1.90732 1.22315 1.53226 1.75743 1.45890 1.10856 1.68261 1.08926 1.22627 0.98803 0.97427 0.78883 0.90085 1.23783 0.98923 0.94690 1.01005 1.24151 0.83854 0.99450 0.87782 0.83006 1.22903 0.98785 0.95452 1.00501 1.22753 0.99344 0.97261 0.97269 1.23166 0.91069 0.90771 0.93346 0.89572 1.46549 1.11255 1.00314 1.73081 1.19006 0.87707 0.92264 1.34934 0.90453 1.24684 0.98299 0.95529 1.02128 1.69456 1.34598 1.00025 1.52738 0.86071 0.83641 0.77671 0.78083 1.21782 1.21761 1.20841 1.19867 0.97206 1.07676 0.90685 1.20019 0.88543 1.01071 0.97696 0.92495 0.92790 0.92336 0.90978 0.91265 0.90074 0.90399 0.75563 0.92160 0.92922 0.92626 0.93266 0.92939 0.92451 0.93614 0.89775 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.16 37.16 0.34 -0.75 16 2 C -0.09 -0.81 2.70 -90.32 -0.24 -1.06 16 3 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 4 C -0.11 -0.79 5.19 -26.47 -0.14 -0.93 16 5 C -0.05 -0.32 6.31 -27.67 -0.17 -0.50 16 6 C 0.00 0.02 7.12 -82.45 -0.59 -0.56 16 7 N -0.38 -4.29 6.82 33.42 0.23 -4.06 16 8 H 0.44 3.33 8.96 -190.22 -1.71 1.62 16 9 N -0.26 -3.98 11.96 33.28 0.40 -3.58 16 10 C 0.00 0.02 7.12 -82.99 -0.59 -0.57 16 11 C 0.60 11.36 7.82 -12.39 -0.10 11.27 16 12 O -0.54 -11.20 15.45 5.30 0.08 -11.12 16 13 N -0.69 -13.33 5.07 -52.38 -0.27 -13.59 16 14 C 0.13 2.54 2.82 -65.44 -0.18 2.35 16 15 H 0.08 1.57 7.26 -51.93 -0.38 1.19 16 16 C -0.14 -3.06 6.33 -23.14 -0.15 -3.20 16 17 C 0.15 3.59 4.77 -61.70 -0.29 3.30 16 18 H 0.15 4.05 5.52 -51.93 -0.29 3.76 16 19 C -0.14 -2.75 6.43 -24.57 -0.16 -2.91 16 20 C -0.13 -2.34 6.43 -24.57 -0.16 -2.50 16 21 C 0.13 2.53 5.01 -62.80 -0.31 2.22 16 22 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 23 N -0.59 -14.38 2.96 -144.64 -0.43 -14.81 16 24 C -0.21 -5.66 10.59 -15.06 -0.16 -5.82 16 25 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 26 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 27 N -0.92 -26.24 10.47 55.49 0.58 -25.66 16 28 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 32 C -0.14 -2.02 5.99 -104.88 -0.63 -2.65 16 33 C -0.04 -0.43 4.84 -27.80 -0.13 -0.57 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.41 8.09 8.39 -40.82 -0.34 7.75 16 42 H 0.06 1.40 7.98 -51.93 -0.41 0.99 16 43 H 0.05 1.04 7.91 -51.92 -0.41 0.62 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 46 H 0.05 0.86 7.85 -51.93 -0.41 0.45 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.08 1.15 7.68 -51.93 -0.40 0.75 16 50 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -31.76 390.94 -11.67 -43.43 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -9.37 Total: 9.89 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.76 Total: -3.27 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.51 Total: -61.70 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.76 -11.67 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098133323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.092 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds