Wall clock time and date at job start Wed Apr 1 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47191 * 2 1 4 4 N 1.39931 * 125.76115 * 89.97096 * 3 2 1 5 5 C 1.30443 * 108.90291 * 180.02562 * 4 3 2 6 6 C 1.41291 * 108.02187 * 0.02562 * 5 4 3 7 7 C 1.47433 * 126.41662 * 179.97438 * 6 5 4 8 8 O 1.21604 * 119.99769 * 176.22601 * 7 6 5 9 9 N 1.34773 * 119.99551 * 356.22636 * 7 6 5 10 10 C 1.46509 * 119.99532 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.68451 * 32.01153 * 10 9 7 12 12 C 1.54851 * 110.62530 * 269.02313 * 10 9 7 13 13 C 1.55842 * 103.44802 * 241.51128 * 12 10 9 14 14 H 1.09000 * 115.55988 * 158.81345 * 13 12 10 15 15 C 1.55846 * 105.06244 * 288.17753 * 13 12 10 16 16 C 1.55877 * 103.52959 * 72.42959 * 15 13 12 17 17 C 1.55839 * 110.62343 * 155.00026 * 10 9 7 18 18 H 1.09002 * 115.56285 * 319.67285 * 17 10 9 19 19 N 1.50239 * 101.05343 * 85.55040 * 17 10 9 20 20 C 1.36926 * 130.84203 * 233.98545 * 19 17 10 21 21 H 1.08006 * 119.99950 * 352.10972 * 20 19 17 22 22 C 1.38815 * 120.00541 * 172.10812 * 20 19 17 23 23 N 1.31625 * 119.99618 * 6.36431 * 22 20 19 24 24 Si 1.86797 * 120.00356 * 186.35933 * 22 20 19 25 25 H 1.48501 * 109.47066 * 94.99095 * 24 22 20 26 26 H 1.48504 * 109.47000 * 214.98619 * 24 22 20 27 27 H 1.48498 * 109.47227 * 334.98783 * 24 22 20 28 28 C 1.34264 * 125.75074 * 270.30457 * 3 2 1 29 29 C 1.50705 * 126.29289 * 359.96362 * 28 3 2 30 30 C 1.52999 * 117.49545 * 311.67914 * 29 28 3 31 31 C 1.52991 * 117.49675 * 243.02325 * 29 28 3 32 32 H 1.09000 * 109.46998 * 299.99989 * 1 2 3 33 33 H 1.08995 * 109.47138 * 60.00269 * 1 2 3 34 34 H 1.09004 * 109.46831 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47377 * 239.99337 * 2 1 3 36 36 H 1.09004 * 109.46753 * 119.99325 * 2 1 3 37 37 H 1.08001 * 125.99360 * 180.02562 * 5 4 3 38 38 H 0.96998 * 120.00326 * 359.97438 * 9 7 6 39 39 H 1.09001 * 110.62465 * 123.01999 * 12 10 9 40 40 H 1.09007 * 110.62468 * 0.02562 * 12 10 9 41 41 H 1.09000 * 110.62550 * 190.31175 * 15 13 12 42 42 H 1.08995 * 110.62405 * 313.17342 * 15 13 12 43 43 H 1.09006 * 110.09283 * 241.13559 * 16 15 13 44 44 H 1.08992 * 111.60456 * 117.80773 * 16 15 13 45 45 H 0.96994 * 120.00252 * 179.97438 * 23 22 20 46 46 H 1.08999 * 115.55393 * 97.34605 * 29 28 3 47 47 H 1.09001 * 117.49805 * 359.97438 * 30 29 28 48 48 H 1.09003 * 117.49774 * 145.01968 * 30 29 28 49 49 H 1.09003 * 117.49506 * 214.97974 * 31 29 28 50 50 H 1.09002 * 117.50187 * 359.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2904 2.1523 1.1355 5 6 2.7062 3.3294 0.7572 6 6 2.7156 3.3566 -0.6554 7 6 3.1160 4.4920 -1.5064 8 8 3.1445 4.3652 -2.7155 9 7 3.4503 5.6703 -0.9442 10 6 3.8488 6.7985 -1.7898 11 1 3.3261 6.7665 -2.7457 12 6 5.3821 6.8030 -2.0063 13 6 5.8324 8.1575 -1.3806 14 1 6.8832 8.2184 -1.0975 15 6 5.3235 9.2494 -2.3694 16 6 3.7815 9.2575 -2.1415 17 6 3.5814 8.1507 -1.0627 18 1 2.6498 8.2058 -0.4997 19 7 4.8423 8.3001 -0.2596 20 6 5.0311 8.5033 1.0813 21 1 4.1851 8.7074 1.7209 22 6 6.3098 8.4468 1.6187 23 7 7.3524 8.3232 0.8248 24 14 6.5508 8.5465 3.4684 25 1 6.6371 7.1748 4.0309 26 1 7.8058 9.2829 3.7650 27 1 5.4014 9.2608 4.0796 28 6 2.2744 2.1227 -1.0896 29 6 2.1131 1.6869 -2.5233 30 6 2.7088 0.3353 -2.9220 31 6 3.3720 1.6326 -3.3910 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.9931 4.1411 1.4094 38 1 3.4272 5.7715 0.0202 39 1 5.6198 6.7733 -3.0696 40 1 5.8460 5.9657 -1.4848 41 1 5.7441 10.2226 -2.1163 42 1 5.5695 8.9815 -3.3969 43 1 3.2652 8.9922 -3.0642 44 1 3.4358 10.2223 -1.7706 45 1 8.2459 8.2841 1.2002 46 1 1.1827 1.9884 -3.0045 47 1 3.2178 -0.2386 -2.1475 48 1 2.1706 -0.2522 -3.6658 49 1 3.2697 1.8983 -4.4432 50 1 4.3168 1.9125 -2.9251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098182602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:57 Heat of formation + Delta-G solvation = 94.140252 kcal Electronic energy + Delta-G solvation = -31177.336000 eV Core-core repulsion = 27207.601588 eV Total energy + Delta-G solvation = -3969.734412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.59946 -41.01206 -39.39302 -38.00037 -35.42768 -35.08786 -34.31699 -31.37640 -30.98569 -30.89951 -30.20179 -29.02827 -26.13939 -25.44817 -24.26301 -23.51930 -23.21100 -22.42595 -21.50012 -20.97148 -20.51398 -20.03288 -18.80127 -18.51314 -17.16211 -17.06650 -16.73764 -16.71607 -15.85317 -15.82052 -15.63922 -15.54055 -15.24097 -15.15068 -14.85365 -14.39745 -14.25930 -13.69094 -13.59852 -13.43440 -13.06483 -12.98569 -12.90653 -12.80495 -12.74633 -12.62139 -12.55997 -12.32553 -12.09990 -12.02315 -11.93034 -11.85617 -11.65713 -11.45396 -11.19252 -11.08144 -10.98542 -10.78230 -10.56197 -10.40775 -9.91435 -9.53520 -8.80702 -7.74279 -5.12180 0.49461 1.13280 1.33490 1.49937 1.51145 1.58689 2.47825 2.53079 2.55038 2.77363 3.35012 3.40151 3.46803 3.50330 3.86207 3.94334 4.01170 4.04421 4.08582 4.13862 4.16094 4.25356 4.30241 4.33221 4.43544 4.52607 4.55150 4.66279 4.70177 4.72899 4.78490 4.82735 4.87169 4.88126 4.98253 5.00628 5.11128 5.13769 5.17720 5.22566 5.22796 5.24920 5.36734 5.44415 5.56392 5.68084 5.83162 5.89013 5.94223 6.31008 6.49489 6.82277 7.09313 7.46768 7.76125 8.63554 9.33914 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.003366 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.924114 B = 8315.318525 C = 9694.465361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.108 3.892 3 N -0.349 5.349 4 N -0.318 5.318 5 C 0.077 3.923 6 C -0.312 4.312 7 C 0.589 3.411 8 O -0.572 6.572 9 N -0.705 5.705 10 C 0.147 3.853 11 H 0.088 0.912 12 C -0.130 4.130 13 C 0.140 3.860 14 H 0.112 0.888 15 C -0.132 4.132 16 C -0.118 4.118 17 C 0.125 3.875 18 H 0.098 0.902 19 N -0.610 5.610 20 C -0.212 4.212 21 H 0.083 0.917 22 C -0.064 4.064 23 N -0.945 5.945 24 Si 0.969 3.031 25 H -0.293 1.293 26 H -0.302 1.302 27 H -0.269 1.269 28 C 0.185 3.815 29 C -0.107 4.107 30 C -0.154 4.154 31 C -0.138 4.138 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.197 0.803 38 H 0.401 0.599 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.244 0.756 46 H 0.134 0.866 47 H 0.099 0.901 48 H 0.135 0.865 49 H 0.107 0.893 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 -16.968 -7.326 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.128 5.128 4 N -0.137 5.137 5 C -0.110 4.110 6 C -0.327 4.327 7 C 0.377 3.623 8 O -0.453 6.453 9 N -0.353 5.353 10 C 0.040 3.960 11 H 0.106 0.894 12 C -0.170 4.170 13 C 0.034 3.966 14 H 0.130 0.870 15 C -0.171 4.171 16 C -0.157 4.157 17 C 0.018 3.982 18 H 0.116 0.884 19 N -0.331 5.331 20 C -0.341 4.341 21 H 0.101 0.899 22 C -0.256 4.256 23 N -0.595 5.595 24 Si 0.799 3.201 25 H -0.220 1.220 26 H -0.230 1.230 27 H -0.194 1.194 28 C 0.051 3.949 29 C -0.127 4.127 30 C -0.190 4.190 31 C -0.176 4.176 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.214 0.786 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.152 0.848 47 H 0.117 0.883 48 H 0.153 0.847 49 H 0.125 0.875 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.072 -17.921 -6.841 23.790 hybrid contribution 0.987 1.169 1.192 1.940 sum -13.085 -16.752 -5.650 21.994 Atomic orbital electron populations 1.22136 0.92792 1.04747 1.02334 1.22343 0.96594 0.75791 1.06400 1.48878 1.48693 1.13016 1.02259 1.77119 1.23353 1.04722 1.08526 1.24253 0.96619 0.96010 0.94070 1.20119 1.21835 0.97031 0.93685 1.17414 0.76033 0.81898 0.86927 1.90679 1.56255 1.83559 1.14768 1.45738 1.67734 1.11125 1.10712 1.22328 0.94250 0.85826 0.93610 0.89409 1.23284 0.95864 0.98896 0.98972 1.23540 0.96798 0.91139 0.85172 0.87050 1.23146 0.96146 0.99009 0.98821 1.22987 0.95810 0.98492 0.98422 1.23372 0.90614 0.92578 0.91631 0.88394 1.46702 1.01350 1.82708 1.02385 1.19321 0.93073 1.38949 0.82797 0.89886 1.25405 0.95446 1.03762 1.01023 1.69752 0.97574 1.58616 1.33578 0.85185 0.76824 0.76981 0.81122 1.22035 1.22953 1.19428 1.20811 0.93832 0.89958 0.90294 1.20475 1.00927 1.03724 0.87596 1.23351 1.02511 0.89468 1.03689 1.22697 0.94745 1.00259 0.99884 0.93309 0.92137 0.87385 0.85952 0.87758 0.78633 0.76494 0.91622 0.95206 0.94366 0.90954 0.90052 0.92028 0.94611 0.84821 0.88280 0.84729 0.87474 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.11 1.50 6.92 86.38 0.60 2.09 16 3 N -0.35 -8.25 3.58 -332.99 -1.19 -9.44 16 4 N -0.32 -9.21 12.50 -56.28 -0.70 -9.91 16 5 C 0.08 2.32 11.50 85.65 0.99 3.31 16 6 C -0.31 -9.82 6.12 -20.15 -0.12 -9.95 16 7 C 0.59 20.90 7.81 86.67 0.68 21.58 16 8 O -0.57 -21.90 14.07 -4.04 -0.06 -21.95 16 9 N -0.70 -25.24 5.06 -438.16 -2.22 -27.46 16 10 C 0.15 5.42 2.82 46.60 0.13 5.55 16 11 H 0.09 3.15 7.26 -2.39 -0.02 3.13 16 12 C -0.13 -5.41 6.23 32.21 0.20 -5.21 16 13 C 0.14 6.48 4.71 46.23 0.22 6.70 16 14 H 0.11 6.12 5.57 -2.39 -0.01 6.11 16 15 C -0.13 -5.08 6.46 32.57 0.21 -4.87 16 16 C -0.12 -3.99 6.53 32.58 0.21 -3.78 16 17 C 0.13 4.73 5.01 46.23 0.23 4.96 16 18 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 19 N -0.61 -28.89 2.98 -615.23 -1.83 -30.72 16 20 C -0.21 -11.14 10.57 84.04 0.89 -10.25 16 21 H 0.08 4.16 7.84 -2.91 -0.02 4.13 16 22 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 23 N -0.95 -55.05 10.52 21.65 0.23 -54.82 16 24 Si 0.97 44.95 29.56 68.60 2.03 46.98 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 28 C 0.19 4.86 6.45 42.14 0.27 5.13 16 29 C -0.11 -2.24 5.11 -11.54 -0.06 -2.29 16 30 C -0.15 -2.11 8.81 30.62 0.27 -1.84 16 31 C -0.14 -3.03 8.64 30.61 0.26 -2.76 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.12 1.13 5.09 -2.39 -0.01 1.11 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.20 5.33 7.51 -2.91 -0.02 5.31 16 38 H 0.40 14.24 7.63 -92.71 -0.71 13.54 16 39 H 0.07 2.51 7.82 -2.39 -0.02 2.49 16 40 H 0.03 1.39 7.98 -2.38 -0.02 1.37 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 2.43 7.82 -2.39 -0.02 2.41 16 43 H 0.08 2.31 7.85 -2.38 -0.02 2.29 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.10 1.26 6.88 -2.39 -0.02 1.24 16 48 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.06 396.15 2.68 -66.38 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.25 Total: 36.69 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.18 Total: 4.26 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -5.72 Total: -132.36 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.06 2.68 -66.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098182602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.517 kcal (2) G-P(sol) polarization free energy of solvation -69.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds