Wall clock time and date at job start Wed Apr 1 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.52911 * 2 1 4 4 C 1.53162 * 109.53368 * 120.14968 * 2 1 3 5 5 C 1.53216 * 109.55217 * 189.13141 * 4 2 1 6 6 N 1.46684 * 108.84116 * 309.37085 * 5 4 2 7 7 N 1.39627 * 127.22831 * 197.43235 * 6 5 4 8 8 C 1.30606 * 108.87171 * 179.97438 * 7 6 5 9 9 C 1.41471 * 108.07236 * 0.02562 * 8 7 6 10 10 C 1.47427 * 126.48611 * 180.02562 * 9 8 7 11 11 O 1.21605 * 120.00059 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99910 * 0.02934 * 10 9 8 13 13 C 1.46501 * 119.99949 * 179.97438 * 12 10 9 14 14 H 1.09009 * 110.55678 * 36.44548 * 13 12 10 15 15 C 1.54855 * 110.62759 * 273.54624 * 13 12 10 16 16 C 1.55840 * 103.44264 * 241.51052 * 15 13 12 17 17 H 1.08998 * 115.56280 * 158.81033 * 16 15 13 18 18 C 1.55849 * 105.06517 * 287.41773 * 16 15 13 19 19 C 1.56693 * 102.59546 * 72.30638 * 18 16 15 20 20 C 1.55845 * 103.60079 * 359.66508 * 19 18 16 21 21 H 1.08994 * 116.12741 * 159.38530 * 20 19 18 22 22 N 1.50233 * 101.05153 * 33.16993 * 20 19 18 23 23 C 1.36941 * 130.83768 * 126.06815 * 22 20 19 24 24 H 1.07992 * 119.99798 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99847 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99708 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 119.99862 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47158 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.47089 * 119.99929 * 27 25 23 30 30 H 1.48497 * 109.47484 * 240.00182 * 27 25 23 31 31 C 1.34599 * 124.43485 * 17.39805 * 6 5 4 32 32 C 1.50809 * 124.57420 * 0.09071 * 31 6 5 33 33 H 1.09002 * 109.47153 * 299.85011 * 1 2 3 34 34 H 1.09001 * 109.46832 * 179.85202 * 1 2 3 35 35 H 1.09004 * 109.47261 * 59.85183 * 1 2 3 36 36 H 1.08998 * 109.45706 * 309.15539 * 4 2 1 37 37 H 1.08998 * 109.45661 * 69.12042 * 4 2 1 38 38 H 1.09000 * 109.57411 * 69.17813 * 5 4 2 39 39 H 1.08993 * 109.57674 * 189.43760 * 5 4 2 40 40 H 1.07999 * 125.95866 * 180.02562 * 8 7 6 41 41 H 0.96998 * 120.00290 * 359.97438 * 12 10 9 42 42 H 1.08999 * 110.62017 * 359.97438 * 15 13 12 43 43 H 1.08990 * 110.62749 * 122.86266 * 15 13 12 44 44 H 1.09000 * 110.63167 * 190.31177 * 18 16 15 45 45 H 1.08995 * 110.62648 * 313.33950 * 18 16 15 46 46 H 1.09005 * 110.35209 * 241.22134 * 19 18 16 47 47 H 1.08990 * 110.75175 * 118.30351 * 19 18 16 48 48 H 0.97008 * 119.99581 * 180.02562 * 26 25 23 49 49 H 1.09003 * 109.71658 * 256.00227 * 32 31 6 50 50 H 1.08994 * 109.71725 * 135.35094 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0421 -0.7250 1.2482 5 6 3.5570 -0.5302 1.3690 6 7 4.1827 -0.8755 0.0880 7 7 5.5293 -1.1623 -0.1443 8 6 5.6930 -1.4221 -1.4137 9 6 4.4350 -1.3083 -2.0508 10 6 4.1556 -1.5174 -3.4832 11 8 3.0233 -1.3873 -3.9071 12 7 5.1552 -1.8528 -4.3228 13 6 4.8775 -2.0611 -5.7460 14 1 4.1192 -1.3599 -6.0947 15 6 4.4316 -3.5210 -6.0069 16 6 5.5288 -4.0685 -6.9687 17 1 5.6252 -5.1537 -7.0030 18 6 5.2515 -3.3746 -8.3363 19 6 5.7094 -1.8998 -8.0703 20 6 6.1833 -1.9254 -6.5859 21 1 6.8560 -1.1231 -6.2829 22 7 6.7370 -3.3183 -6.4843 23 6 7.9647 -3.7663 -6.0752 24 1 8.7180 -3.0612 -5.7564 25 6 8.2408 -5.1267 -6.0703 26 7 7.3224 -5.9859 -6.4583 27 14 9.9157 -5.7377 -5.5130 28 1 10.7625 -4.5798 -5.1293 29 1 9.7502 -6.6383 -4.3438 30 1 10.5658 -6.4809 -6.6221 31 6 3.5223 -0.9674 -1.0813 32 6 2.0430 -0.7277 -1.2498 33 1 -0.3633 0.5115 0.8913 34 1 -0.3633 -1.0277 -0.0027 35 1 -0.3634 0.5161 -0.8887 36 1 1.5519 -0.3167 2.1320 37 1 1.8183 -1.7887 1.1677 38 1 3.7732 0.5101 1.6124 39 1 3.9470 -1.1776 2.1543 40 1 6.6260 -1.6790 -1.8933 41 1 6.0584 -1.9562 -3.9847 42 1 4.4176 -4.0900 -5.0773 43 1 3.4524 -3.5438 -6.4849 44 1 5.8527 -3.8266 -9.1252 45 1 4.1912 -3.4240 -8.5840 46 1 4.8709 -1.2144 -8.1939 47 1 6.5315 -1.6256 -8.7311 48 1 7.5153 -6.9367 -6.4546 49 1 1.5260 -1.6812 -1.3583 50 1 1.8684 -0.1115 -2.1318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098299103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:04 Heat of formation + Delta-G solvation = 70.985010 kcal Electronic energy + Delta-G solvation = -31001.022462 eV Core-core repulsion = 27030.283964 eV Total energy + Delta-G solvation = -3970.738498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69778 -39.48164 -38.00301 -37.35397 -33.62927 -33.14523 -32.44674 -31.17920 -29.47924 -29.05638 -28.56543 -27.63215 -26.66870 -24.30917 -24.05478 -22.53854 -21.76927 -20.89507 -19.76080 -19.59683 -19.08647 -18.54409 -17.34765 -16.94057 -16.05291 -15.58141 -15.44007 -15.11361 -14.81024 -14.69252 -14.43108 -14.01861 -13.96743 -13.84060 -13.61696 -13.34656 -13.08006 -12.68057 -12.61399 -12.42153 -11.98292 -11.94732 -11.78554 -11.42328 -11.23684 -11.14988 -11.08530 -11.05337 -10.89833 -10.87642 -10.68491 -10.43447 -10.34340 -10.04433 -9.84156 -9.56127 -9.36545 -9.18810 -9.09097 -8.92511 -8.63886 -8.21865 -6.90670 -5.71130 -3.10055 1.61244 2.25630 2.30849 3.38618 3.43851 3.46553 3.78870 3.86484 4.09900 4.21380 4.29816 4.38346 4.43748 4.79685 4.81372 4.97209 5.06999 5.18917 5.21530 5.23867 5.33816 5.39714 5.40218 5.44788 5.47696 5.59265 5.69085 5.74123 5.77103 5.82433 5.92868 5.94813 6.01878 6.11532 6.18865 6.22429 6.36879 6.47911 6.49129 6.57285 6.66469 6.81368 6.82066 6.89178 7.01790 7.23194 7.40965 7.51473 7.59762 7.83175 8.18431 8.22185 8.82005 9.10640 9.73990 10.55495 11.37740 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.003074 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.536481 B = 9106.864540 C =10451.172080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.077 0.923 4 C -0.134 4.134 5 C 0.132 3.868 6 N -0.365 5.365 7 N -0.300 5.300 8 C 0.084 3.916 9 C -0.286 4.286 10 C 0.591 3.409 11 O -0.561 6.561 12 N -0.702 5.702 13 C 0.133 3.867 14 H 0.077 0.923 15 C -0.141 4.141 16 C 0.153 3.847 17 H 0.151 0.849 18 C -0.139 4.139 19 C -0.127 4.127 20 C 0.125 3.875 21 H 0.088 0.912 22 N -0.590 5.590 23 C -0.212 4.212 24 H 0.079 0.921 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.913 3.087 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 C 0.153 3.847 32 C -0.052 4.052 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.191 0.809 41 H 0.400 0.600 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.253 0.747 49 H 0.095 0.905 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 12.123 12.586 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.095 0.905 4 C -0.173 4.173 5 C 0.011 3.989 6 N -0.145 5.145 7 N -0.119 5.119 8 C -0.103 4.103 9 C -0.300 4.300 10 C 0.378 3.622 11 O -0.442 6.442 12 N -0.350 5.350 13 C 0.026 3.974 14 H 0.095 0.905 15 C -0.182 4.182 16 C 0.046 3.954 17 H 0.168 0.832 18 C -0.178 4.178 19 C -0.167 4.167 20 C 0.016 3.984 21 H 0.106 0.894 22 N -0.311 5.311 23 C -0.340 4.340 24 H 0.097 0.903 25 C -0.206 4.206 26 N -0.567 5.567 27 Si 0.744 3.256 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 C 0.021 3.979 32 C -0.091 4.091 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.208 0.792 41 H 0.234 0.766 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.113 0.887 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.624 12.109 13.642 21.630 hybrid contribution 1.126 -0.533 -0.268 1.274 sum -10.498 11.577 13.374 20.569 Atomic orbital electron populations 1.21789 0.93718 1.02445 1.02247 1.21354 0.96936 0.99782 0.93914 0.90455 1.22079 0.92888 1.02626 0.99669 1.21850 0.92608 1.02040 0.82389 1.48539 1.05808 1.53056 1.07142 1.77100 0.93594 1.23345 1.17820 1.24200 0.98503 0.96917 0.90708 1.19986 0.93472 1.21404 0.95160 1.17158 0.84796 0.76278 0.83971 1.90691 1.21558 1.53932 1.78008 1.45765 1.11053 1.69241 1.08934 1.22589 0.98323 0.97225 0.79217 0.90497 1.23446 0.98467 0.95177 1.01103 1.23709 0.83226 1.00263 0.88197 0.83211 1.23367 0.98306 0.95502 1.00668 1.23165 0.99147 0.97064 0.97313 1.23162 0.91917 0.89978 0.93306 0.89425 1.46515 1.10867 0.99052 1.74640 1.19043 0.88151 0.90981 1.35858 0.90343 1.24693 0.98048 0.95657 1.02219 1.69485 1.32386 1.01338 1.53444 0.86014 0.83171 0.78558 0.77821 1.20585 1.21877 1.21895 1.21347 0.95408 0.95658 0.85500 1.20627 0.86765 1.02693 0.98982 0.92355 0.92191 0.91888 0.88889 0.90389 0.89709 0.88727 0.79188 0.76556 0.92298 0.92948 0.92697 0.93155 0.93052 0.92487 0.93661 0.88687 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.17 37.16 0.34 -0.54 16 2 C -0.10 -0.76 2.76 -90.30 -0.25 -1.01 16 3 H 0.08 0.58 8.12 -51.93 -0.42 0.15 16 4 C -0.13 -0.85 5.23 -26.54 -0.14 -0.99 16 5 C 0.13 1.08 7.27 -3.83 -0.03 1.05 16 6 N -0.36 -4.63 4.01 -56.41 -0.23 -4.86 16 7 N -0.30 -4.46 12.54 30.93 0.39 -4.07 16 8 C 0.08 1.25 11.51 -16.84 -0.19 1.06 16 9 C -0.29 -4.52 6.12 -105.21 -0.64 -5.16 16 10 C 0.59 10.57 7.81 -12.52 -0.10 10.47 16 11 O -0.56 -11.13 15.14 5.27 0.08 -11.05 16 12 N -0.70 -12.53 5.09 -52.46 -0.27 -12.80 16 13 C 0.13 2.51 2.73 -65.43 -0.18 2.34 16 14 H 0.08 1.45 7.36 -51.92 -0.38 1.07 16 15 C -0.14 -2.95 6.22 -24.24 -0.15 -3.10 16 16 C 0.15 3.50 4.67 -62.80 -0.29 3.20 16 17 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16 18 C -0.14 -2.76 6.58 -23.22 -0.15 -2.91 16 19 C -0.13 -2.31 6.49 -23.22 -0.15 -2.46 16 20 C 0.12 2.43 5.04 -62.80 -0.32 2.12 16 21 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 22 N -0.59 -13.94 2.99 -145.82 -0.44 -14.38 16 23 C -0.21 -5.53 10.59 -15.06 -0.16 -5.69 16 24 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.92 -25.86 10.46 55.49 0.58 -25.28 16 27 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 31 C 0.15 2.10 6.66 -81.61 -0.54 1.55 16 32 C -0.05 -0.58 4.69 -27.60 -0.13 -0.71 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.19 2.44 7.51 -52.49 -0.39 2.05 16 41 H 0.40 6.89 7.59 -40.82 -0.31 6.58 16 42 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 43 H 0.05 1.02 7.81 -51.93 -0.41 0.62 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.89 7.81 -51.93 -0.41 0.49 16 46 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 49 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 50 H 0.11 1.29 7.46 -51.93 -0.39 0.91 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -31.72 390.75 -10.20 -41.92 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.01 Total: 9.28 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.18 Total: -1.15 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.04 Total: -61.39 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.72 -10.20 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098299103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.904 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds