Wall clock time and date at job start Wed Apr 1 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.52911 * 2 1 4 4 C 1.53162 * 109.53368 * 120.14968 * 2 1 3 5 5 C 1.53216 * 109.55217 * 189.13141 * 4 2 1 6 6 N 1.46684 * 108.84116 * 309.37085 * 5 4 2 7 7 N 1.39627 * 127.22831 * 197.43235 * 6 5 4 8 8 C 1.30606 * 108.87171 * 179.97438 * 7 6 5 9 9 C 1.41471 * 108.07236 * 0.02562 * 8 7 6 10 10 C 1.47427 * 126.48611 * 180.02562 * 9 8 7 11 11 O 1.21605 * 120.00059 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99910 * 0.02934 * 10 9 8 13 13 C 1.46501 * 119.99949 * 179.97438 * 12 10 9 14 14 H 1.09009 * 110.55678 * 36.44548 * 13 12 10 15 15 C 1.54855 * 110.62759 * 273.54624 * 13 12 10 16 16 C 1.55840 * 103.44264 * 241.51052 * 15 13 12 17 17 H 1.08998 * 115.56280 * 158.81033 * 16 15 13 18 18 C 1.55849 * 105.06517 * 287.41773 * 16 15 13 19 19 C 1.56693 * 102.59546 * 72.30638 * 18 16 15 20 20 C 1.55845 * 103.60079 * 359.66508 * 19 18 16 21 21 H 1.08994 * 116.12741 * 159.38530 * 20 19 18 22 22 N 1.50233 * 101.05153 * 33.16993 * 20 19 18 23 23 C 1.36941 * 130.83768 * 126.06815 * 22 20 19 24 24 H 1.07992 * 119.99798 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99847 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99708 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 119.99862 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47158 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.47089 * 119.99929 * 27 25 23 30 30 H 1.48497 * 109.47484 * 240.00182 * 27 25 23 31 31 C 1.34599 * 124.43485 * 17.39805 * 6 5 4 32 32 C 1.50809 * 124.57420 * 0.09071 * 31 6 5 33 33 H 1.09002 * 109.47153 * 299.85011 * 1 2 3 34 34 H 1.09001 * 109.46832 * 179.85202 * 1 2 3 35 35 H 1.09004 * 109.47261 * 59.85183 * 1 2 3 36 36 H 1.08998 * 109.45706 * 309.15539 * 4 2 1 37 37 H 1.08998 * 109.45661 * 69.12042 * 4 2 1 38 38 H 1.09000 * 109.57411 * 69.17813 * 5 4 2 39 39 H 1.08993 * 109.57674 * 189.43760 * 5 4 2 40 40 H 1.07999 * 125.95866 * 180.02562 * 8 7 6 41 41 H 0.96998 * 120.00290 * 359.97438 * 12 10 9 42 42 H 1.08999 * 110.62017 * 359.97438 * 15 13 12 43 43 H 1.08990 * 110.62749 * 122.86266 * 15 13 12 44 44 H 1.09000 * 110.63167 * 190.31177 * 18 16 15 45 45 H 1.08995 * 110.62648 * 313.33950 * 18 16 15 46 46 H 1.09005 * 110.35209 * 241.22134 * 19 18 16 47 47 H 1.08990 * 110.75175 * 118.30351 * 19 18 16 48 48 H 0.97008 * 119.99581 * 180.02562 * 26 25 23 49 49 H 1.09003 * 109.71658 * 256.00227 * 32 31 6 50 50 H 1.08994 * 109.71725 * 135.35094 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0421 -0.7250 1.2482 5 6 3.5570 -0.5302 1.3690 6 7 4.1827 -0.8755 0.0880 7 7 5.5293 -1.1623 -0.1443 8 6 5.6930 -1.4221 -1.4137 9 6 4.4350 -1.3083 -2.0508 10 6 4.1556 -1.5174 -3.4832 11 8 3.0233 -1.3873 -3.9071 12 7 5.1552 -1.8528 -4.3228 13 6 4.8775 -2.0611 -5.7460 14 1 4.1192 -1.3599 -6.0947 15 6 4.4316 -3.5210 -6.0069 16 6 5.5288 -4.0685 -6.9687 17 1 5.6252 -5.1537 -7.0030 18 6 5.2515 -3.3746 -8.3363 19 6 5.7094 -1.8998 -8.0703 20 6 6.1833 -1.9254 -6.5859 21 1 6.8560 -1.1231 -6.2829 22 7 6.7370 -3.3183 -6.4843 23 6 7.9647 -3.7663 -6.0752 24 1 8.7180 -3.0612 -5.7564 25 6 8.2408 -5.1267 -6.0703 26 7 7.3224 -5.9859 -6.4583 27 14 9.9157 -5.7377 -5.5130 28 1 10.7625 -4.5798 -5.1293 29 1 9.7502 -6.6383 -4.3438 30 1 10.5658 -6.4809 -6.6221 31 6 3.5223 -0.9674 -1.0813 32 6 2.0430 -0.7277 -1.2498 33 1 -0.3633 0.5115 0.8913 34 1 -0.3633 -1.0277 -0.0027 35 1 -0.3634 0.5161 -0.8887 36 1 1.5519 -0.3167 2.1320 37 1 1.8183 -1.7887 1.1677 38 1 3.7732 0.5101 1.6124 39 1 3.9470 -1.1776 2.1543 40 1 6.6260 -1.6790 -1.8933 41 1 6.0584 -1.9562 -3.9847 42 1 4.4176 -4.0900 -5.0773 43 1 3.4524 -3.5438 -6.4849 44 1 5.8527 -3.8266 -9.1252 45 1 4.1912 -3.4240 -8.5840 46 1 4.8709 -1.2144 -8.1939 47 1 6.5315 -1.6256 -8.7311 48 1 7.5153 -6.9367 -6.4546 49 1 1.5260 -1.6812 -1.3583 50 1 1.8684 -0.1115 -2.1318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098299103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:03 Heat of formation + Delta-G solvation = 52.315813 kcal Electronic energy + Delta-G solvation = -31001.832019 eV Core-core repulsion = 27030.283964 eV Total energy + Delta-G solvation = -3971.548056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.74157 -41.04605 -39.47185 -38.13203 -35.18811 -34.36198 -33.95473 -32.13347 -30.92800 -30.66324 -30.04353 -28.94763 -27.60665 -26.08620 -24.98448 -23.76626 -22.79112 -22.10705 -21.47181 -20.82846 -20.34844 -19.85163 -18.79670 -18.56180 -17.19582 -16.83710 -16.69603 -16.54758 -15.94421 -15.83270 -15.59224 -15.52817 -15.18659 -14.94476 -14.76345 -14.64678 -14.29373 -13.85204 -13.65773 -13.60717 -13.33219 -13.10751 -12.87871 -12.84653 -12.74678 -12.61780 -12.57696 -12.29830 -12.03830 -11.93111 -11.91911 -11.85342 -11.67981 -11.63917 -11.51570 -11.13891 -10.91691 -10.90288 -10.61213 -10.37388 -9.97335 -9.55590 -8.83045 -7.72588 -5.11998 0.50514 1.11178 1.35322 1.49797 1.50776 1.59503 2.42920 2.52841 2.53190 3.34252 3.41000 3.44439 3.50108 3.63213 3.66313 3.89218 4.05237 4.09451 4.12749 4.23337 4.26950 4.32172 4.37063 4.49925 4.52895 4.58273 4.59813 4.68104 4.68864 4.74702 4.80013 4.82845 4.87788 4.92064 4.96344 5.05971 5.10877 5.13038 5.22496 5.24272 5.28687 5.36720 5.42666 5.42903 5.56367 5.66513 5.80272 5.88197 5.93321 6.31216 6.49465 6.77795 7.09500 7.40511 7.76248 8.62334 9.34808 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.003074 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.536481 B = 9106.864540 C =10451.172080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.082 0.918 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.358 5.358 7 N -0.319 5.319 8 C 0.080 3.920 9 C -0.317 4.317 10 C 0.591 3.409 11 O -0.585 6.585 12 N -0.702 5.702 13 C 0.144 3.856 14 H 0.087 0.913 15 C -0.131 4.131 16 C 0.139 3.861 17 H 0.113 0.887 18 C -0.132 4.132 19 C -0.117 4.117 20 C 0.127 3.873 21 H 0.103 0.897 22 N -0.609 5.609 23 C -0.209 4.209 24 H 0.087 0.913 25 C -0.069 4.069 26 N -0.948 5.948 27 Si 0.971 3.029 28 H -0.265 1.265 29 H -0.300 1.300 30 H -0.300 1.300 31 C 0.156 3.844 32 C -0.052 4.052 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.129 0.871 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.201 0.799 41 H 0.402 0.598 42 H 0.028 0.972 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.243 0.757 49 H 0.089 0.911 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.511 14.531 14.180 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.100 0.900 4 C -0.165 4.165 5 C 0.000 4.000 6 N -0.138 5.138 7 N -0.138 5.138 8 C -0.107 4.107 9 C -0.332 4.332 10 C 0.380 3.620 11 O -0.467 6.467 12 N -0.350 5.350 13 C 0.038 3.962 14 H 0.105 0.895 15 C -0.172 4.172 16 C 0.032 3.968 17 H 0.130 0.870 18 C -0.171 4.171 19 C -0.157 4.157 20 C 0.020 3.980 21 H 0.121 0.879 22 N -0.330 5.330 23 C -0.338 4.338 24 H 0.105 0.895 25 C -0.261 4.261 26 N -0.598 5.598 27 Si 0.802 3.198 28 H -0.189 1.189 29 H -0.228 1.228 30 H -0.228 1.228 31 C 0.023 3.977 32 C -0.090 4.090 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.218 0.782 41 H 0.237 0.763 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.053 0.947 49 H 0.108 0.892 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.495 14.564 15.263 24.519 hybrid contribution 1.324 -1.242 -0.700 1.945 sum -11.171 13.322 14.563 22.679 Atomic orbital electron populations 1.21771 0.92401 1.02642 1.03064 1.21329 0.97910 0.99518 0.92514 0.89971 1.22107 0.91572 1.02371 1.00425 1.22358 0.93605 1.03446 0.80637 1.48950 1.05041 1.51544 1.08254 1.77035 0.95127 1.23892 1.17708 1.24373 0.98718 0.96820 0.90804 1.19965 0.94745 1.23975 0.94518 1.17422 0.84292 0.75496 0.84766 1.90664 1.22331 1.55113 1.78609 1.45724 1.11296 1.69344 1.08634 1.22423 0.98135 0.95800 0.79887 0.89541 1.23303 0.98525 0.96078 0.99252 1.23543 0.83903 0.98762 0.90598 0.87012 1.23267 0.99492 0.96253 0.98093 1.23115 1.00377 0.96223 0.95979 1.23378 0.91974 0.88317 0.94372 0.87863 1.46700 1.10435 1.01164 1.74734 1.19399 0.89167 0.91127 1.34112 0.89544 1.25405 1.00913 0.96184 1.03609 1.69741 1.33847 1.00886 1.55375 0.85086 0.80109 0.78057 0.76568 1.18894 1.22825 1.22753 1.21721 0.96373 0.94166 0.85483 1.20695 0.85181 1.02623 1.00536 0.90246 0.92315 0.92404 0.85307 0.91005 0.87762 0.87576 0.78223 0.76282 0.95292 0.91657 0.94341 0.90884 0.89945 0.92112 0.94678 0.89234 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.17 71.98 0.66 -0.69 16 2 C -0.09 -1.18 2.76 -10.59 -0.03 -1.21 16 3 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 4 C -0.13 -1.21 5.23 30.72 0.16 -1.05 16 5 C 0.12 1.61 7.27 86.42 0.63 2.24 16 6 N -0.36 -8.60 4.01 -332.38 -1.33 -9.93 16 7 N -0.32 -9.23 12.54 -56.07 -0.70 -9.93 16 8 C 0.08 2.37 11.51 85.67 0.99 3.35 16 9 C -0.32 -10.07 6.12 -20.25 -0.12 -10.19 16 10 C 0.59 21.26 7.81 86.66 0.68 21.94 16 11 O -0.58 -23.25 15.14 -4.05 -0.06 -23.31 16 12 N -0.70 -24.98 5.09 -438.13 -2.23 -27.21 16 13 C 0.14 5.32 2.73 46.61 0.13 5.45 16 14 H 0.09 3.09 7.36 -2.38 -0.02 3.07 16 15 C -0.13 -5.50 6.22 32.21 0.20 -5.30 16 16 C 0.14 6.45 4.67 46.23 0.22 6.67 16 17 H 0.11 6.18 5.52 -2.39 -0.01 6.17 16 18 C -0.13 -5.12 6.58 32.87 0.22 -4.90 16 19 C -0.12 -3.98 6.49 32.87 0.21 -3.77 16 20 C 0.13 4.74 5.04 46.23 0.23 4.98 16 21 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 22 N -0.61 -28.82 2.99 -615.25 -1.84 -30.66 16 23 C -0.21 -10.93 10.59 84.03 0.89 -10.04 16 24 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 25 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 26 N -0.95 -55.47 10.46 21.65 0.23 -55.24 16 27 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 28 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 30 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 31 C 0.16 4.20 6.66 41.98 0.28 4.48 16 32 C -0.05 -1.11 4.69 30.03 0.14 -0.97 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.13 0.39 8.12 -2.39 -0.02 0.37 16 37 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.20 5.17 7.51 -2.91 -0.02 5.15 16 41 H 0.40 13.88 7.59 -92.71 -0.70 13.18 16 42 H 0.03 1.35 7.98 -2.39 -0.02 1.34 16 43 H 0.06 2.52 7.81 -2.39 -0.02 2.50 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 2.47 7.81 -2.39 -0.02 2.46 16 46 H 0.08 2.33 7.82 -2.38 -0.02 2.31 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.24 14.05 8.31 -92.70 -0.77 13.28 16 49 H 0.09 2.01 8.11 -2.39 -0.02 1.99 16 50 H 0.09 2.23 7.46 -2.39 -0.02 2.21 16 Total: -1.00 -70.43 390.75 2.27 -68.16 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.25 Total: 33.33 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.94 Total: 7.68 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -5.88 Total: -132.98 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -70.43 2.27 -68.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098299103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.478 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds