Wall clock time and date at job start Wed Apr 1 2020 03:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 110.63700 * 2 1 4 4 C 1.54322 * 110.87035 * 236.75093 * 2 1 3 5 5 N 1.47017 * 107.27312 * 219.37118 * 4 2 1 6 6 C 1.36934 * 125.65252 * 178.99665 * 5 4 2 7 7 H 1.08005 * 120.00272 * 179.97438 * 6 5 4 8 8 C 1.38813 * 119.99835 * 359.97438 * 6 5 4 9 9 N 1.31617 * 119.99935 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00167 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47102 * 60.00026 * 10 8 6 12 12 H 1.48500 * 109.47302 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46768 * 300.00535 * 10 8 6 14 14 C 1.47470 * 108.72130 * 358.97998 * 5 4 2 15 15 C 1.54915 * 104.81260 * 24.06589 * 14 5 4 16 16 H 1.09001 * 110.99758 * 81.13875 * 15 14 5 17 17 C 1.52995 * 111.00395 * 204.95004 * 15 14 5 18 18 C 1.52995 * 109.47468 * 290.41905 * 17 15 14 19 19 N 1.46498 * 109.47286 * 180.02562 * 18 17 15 20 20 C 1.34779 * 119.99955 * 179.97438 * 19 18 17 21 21 O 1.21548 * 120.00252 * 359.97438 * 20 19 18 22 22 C 1.47833 * 119.99732 * 180.02562 * 20 19 18 23 23 C 1.39970 * 120.94125 * 5.60792 * 22 20 19 24 24 N 1.32136 * 118.91934 * 180.27606 * 23 22 20 25 25 C 1.31875 * 120.97035 * 359.75299 * 24 23 22 26 26 N 1.31856 * 122.09767 * 0.02562 * 25 24 23 27 27 C 1.32160 * 120.96269 * 359.97438 * 26 25 24 28 28 C 1.50706 * 120.53396 * 179.97438 * 27 26 25 29 29 C 1.52996 * 117.50273 * 68.90413 * 28 27 26 30 30 C 1.52999 * 60.03053 * 252.47517 * 29 28 27 31 31 H 1.08997 * 109.46895 * 296.85785 * 1 2 3 32 32 H 1.08997 * 109.47079 * 56.85401 * 1 2 3 33 33 H 1.08999 * 109.46963 * 176.85830 * 1 2 3 34 34 H 1.08996 * 109.88250 * 338.79292 * 4 2 1 35 35 H 1.09004 * 109.87912 * 99.95362 * 4 2 1 36 36 H 0.97006 * 120.00044 * 179.97438 * 9 8 6 37 37 H 1.08997 * 110.35051 * 265.25255 * 14 5 4 38 38 H 1.08996 * 110.40915 * 142.91453 * 14 5 4 39 39 H 1.09001 * 109.46865 * 170.41688 * 17 15 14 40 40 H 1.09004 * 109.47139 * 50.42287 * 17 15 14 41 41 H 1.09001 * 109.47256 * 60.00021 * 18 17 15 42 42 H 1.09004 * 109.47252 * 300.00312 * 18 17 15 43 43 H 0.97000 * 120.00089 * 0.02562 * 19 18 17 44 44 H 1.08000 * 120.53983 * 0.02562 * 23 22 20 45 45 H 1.08002 * 118.95169 * 179.97438 * 25 24 23 46 46 H 1.09006 * 115.54705 * 214.57476 * 28 27 26 47 47 H 1.09004 * 117.49585 * 359.96928 * 29 28 27 48 48 H 1.08997 * 117.50488 * 144.97625 * 29 28 27 49 49 H 1.09001 * 117.50347 * 107.49683 * 30 29 28 50 50 H 1.09004 * 117.50075 * 252.51927 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0127 -2.3915 -1.4965 7 1 4.8557 -2.9027 -1.0556 8 6 3.7029 -2.5906 -2.8349 9 7 2.6759 -1.9673 -3.3725 10 14 4.7436 -3.7433 -3.8731 11 1 4.7036 -5.1079 -3.2888 12 1 4.2086 -3.7813 -5.2579 13 1 6.1463 -3.2564 -3.8980 14 6 3.4652 -1.2456 0.6919 15 6 2.0790 -0.7934 1.2152 16 1 1.4466 -1.6526 1.4388 17 6 2.2237 0.1111 2.4406 18 6 2.7232 -0.7146 3.6278 19 7 2.8612 0.1513 4.8014 20 6 3.2894 -0.3626 5.9715 21 8 3.5607 -1.5446 6.0531 22 6 3.4281 0.5112 7.1558 23 6 3.0111 1.8468 7.1176 24 7 3.1589 2.5935 8.1977 25 6 3.6851 2.0960 9.2999 26 7 4.0869 0.8427 9.3806 27 6 3.9765 0.0254 8.3480 28 6 4.4394 -1.4051 8.4509 29 6 3.6401 -2.3429 9.3577 30 6 5.0282 -1.8639 9.7872 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8604 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3190 -1.4772 -1.5770 35 1 2.3775 -0.1015 -1.9963 36 1 2.4596 -2.1061 -4.3079 37 1 4.1933 -0.4423 0.8039 38 1 3.7985 -2.1374 1.2226 39 1 1.2562 0.5499 2.6846 40 1 2.9384 0.9050 2.2239 41 1 3.6906 -1.1535 3.3839 42 1 2.0084 -1.5086 3.8446 43 1 2.6436 1.0944 4.7366 44 1 2.5794 2.2614 6.2187 45 1 3.7911 2.7357 10.1636 46 1 4.8665 -1.8276 7.5412 47 1 2.7796 -1.9251 9.8803 48 1 3.5409 -3.3823 9.0446 49 1 5.0811 -1.1310 10.5923 50 1 5.8424 -2.5881 9.7563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103688230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:08 Heat of formation + Delta-G solvation = 36.957316 kcal Electronic energy + Delta-G solvation = -29396.317100 eV Core-core repulsion = 25424.103051 eV Total energy + Delta-G solvation = -3972.214050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45079 -40.49418 -39.66627 -38.25716 -36.47616 -35.07346 -34.49245 -33.53185 -32.50834 -32.13906 -28.59367 -27.52640 -26.45217 -26.34342 -25.31542 -23.51383 -23.24620 -22.43527 -21.96470 -21.38686 -20.69255 -18.96540 -18.80941 -18.77946 -17.98240 -17.06826 -16.73866 -16.65414 -16.30786 -16.06080 -15.69671 -15.68409 -15.36450 -15.08287 -14.94261 -14.61231 -14.37598 -14.13959 -13.80337 -13.40688 -13.33956 -13.08995 -12.91960 -12.79291 -12.75515 -12.68906 -12.51704 -12.40300 -12.36037 -12.18695 -11.92943 -11.78766 -11.60855 -11.38931 -11.34602 -11.21366 -11.10073 -10.73392 -10.68389 -10.57356 -10.39789 -10.07984 -8.87254 -7.84434 -5.19449 -0.67313 -0.13782 1.43662 1.46990 1.53252 1.73789 1.98177 2.49242 2.55942 2.81047 2.95730 3.04365 3.26848 3.32769 3.55336 3.67426 3.72203 3.80087 3.97572 3.99146 4.04138 4.06366 4.10310 4.29082 4.33627 4.39404 4.54566 4.64529 4.66449 4.73677 4.76661 4.78696 4.85745 4.93039 5.03685 5.04809 5.10863 5.15489 5.19748 5.21484 5.27947 5.31006 5.40602 5.43014 5.47924 5.57725 5.77293 5.77671 5.85712 6.22206 6.43216 6.89866 7.10796 7.12150 7.80657 8.44672 9.25254 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.002042 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.708334 B =13711.883913 C =14850.479616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.081 0.919 4 C 0.189 3.811 5 N -0.632 5.632 6 C -0.244 4.244 7 H 0.078 0.922 8 C -0.068 4.068 9 N -0.950 5.950 10 Si 0.977 3.023 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.132 3.868 15 C -0.079 4.079 16 H 0.072 0.928 17 C -0.101 4.101 18 C 0.126 3.874 19 N -0.706 5.706 20 C 0.565 3.435 21 O -0.556 6.556 22 C -0.252 4.252 23 C 0.196 3.804 24 N -0.537 5.537 25 C 0.319 3.681 26 N -0.535 5.535 27 C 0.253 3.747 28 C -0.141 4.141 29 C -0.145 4.145 30 C -0.149 4.149 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.009 0.991 35 H -0.002 1.002 36 H 0.246 0.754 37 H 0.024 0.976 38 H 0.033 0.967 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.415 0.585 44 H 0.206 0.794 45 H 0.234 0.766 46 H 0.129 0.871 47 H 0.092 0.908 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 10.362 27.366 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 H 0.099 0.901 4 C 0.064 3.936 5 N -0.358 5.358 6 C -0.373 4.373 7 H 0.096 0.904 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.204 1.204 14 C 0.007 3.993 15 C -0.099 4.099 16 H 0.090 0.910 17 C -0.139 4.139 18 C 0.002 3.998 19 N -0.358 5.358 20 C 0.351 3.649 21 O -0.436 6.436 22 C -0.259 4.259 23 C 0.029 3.971 24 N -0.250 5.250 25 C 0.033 3.967 26 N -0.249 5.249 27 C 0.108 3.892 28 C -0.159 4.159 29 C -0.183 4.183 30 C -0.187 4.187 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.253 0.747 44 H 0.222 0.778 45 H 0.250 0.750 46 H 0.147 0.853 47 H 0.110 0.890 48 H 0.125 0.875 49 H 0.127 0.873 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.987 10.058 27.997 29.815 hybrid contribution 0.458 -0.967 -2.107 2.363 sum -1.529 9.091 25.890 27.482 Atomic orbital electron populations 1.21636 0.93207 1.01210 1.02385 1.22364 0.96743 0.98657 0.94297 0.90115 1.21008 0.87831 0.91936 0.92810 1.44844 1.32526 1.51462 1.07009 1.19417 1.07736 1.18102 0.92026 0.90407 1.25647 0.99920 1.02329 0.98203 1.70192 1.30323 1.47120 1.12306 0.85180 0.78087 0.78781 0.77469 1.20381 1.21909 1.20350 1.21858 0.96174 0.97149 0.84084 1.22193 0.95662 0.98078 0.93940 0.90972 1.21618 1.03482 0.97609 0.91232 1.21332 1.01203 0.93320 0.83937 1.45742 1.66944 1.13890 1.09238 1.17936 0.77134 0.86892 0.82929 1.90757 1.50718 1.17345 1.84733 1.21509 1.09558 0.97987 0.96890 1.23995 0.87997 0.87528 0.97600 1.68566 1.16725 1.38789 1.00940 1.25938 0.85542 0.89106 0.96147 1.68330 1.19931 1.05962 1.30657 1.21123 0.86014 0.94919 0.87192 1.21276 1.07748 0.89121 0.97797 1.22907 0.95723 0.98997 1.00670 1.23082 0.96542 1.03066 0.95961 0.89690 0.93089 0.94169 0.97258 0.98385 0.94478 0.95812 0.94897 0.88145 0.90004 0.92748 0.91745 0.74691 0.77754 0.74978 0.85307 0.88987 0.87508 0.87340 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.17 71.98 0.66 -2.83 16 2 C -0.10 -3.39 3.01 -9.60 -0.03 -3.42 16 3 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 4 C 0.19 9.33 4.97 86.73 0.43 9.76 16 5 N -0.63 -33.05 3.40 -691.88 -2.35 -35.40 16 6 C -0.24 -14.06 10.28 84.03 0.86 -13.20 16 7 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 8 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 9 N -0.95 -58.31 10.31 21.65 0.22 -58.09 16 10 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.13 5.27 6.04 86.85 0.52 5.79 16 15 C -0.08 -2.36 2.48 -9.40 -0.02 -2.39 16 16 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 17 C -0.10 -1.92 4.84 30.59 0.15 -1.78 16 18 C 0.13 2.59 5.55 86.38 0.48 3.06 16 19 N -0.71 -11.32 5.51 -465.99 -2.57 -13.89 16 20 C 0.57 12.01 7.75 86.78 0.67 12.68 16 21 O -0.56 -15.92 13.55 -3.87 -0.05 -15.97 16 22 C -0.25 -4.56 5.91 -19.91 -0.12 -4.68 16 23 C 0.20 2.52 10.80 85.07 0.92 3.44 16 24 N -0.54 -7.66 10.42 -198.97 -2.07 -9.73 16 25 C 0.32 4.27 12.27 180.84 2.22 6.49 16 26 N -0.53 -9.44 9.45 -187.06 -1.77 -11.20 16 27 C 0.25 5.10 6.53 42.92 0.28 5.38 16 28 C -0.14 -2.91 4.77 -11.52 -0.05 -2.97 16 29 C -0.14 -2.55 10.23 30.59 0.31 -2.23 16 30 C -0.15 -2.41 10.05 30.62 0.31 -2.10 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.01 0.51 7.02 -2.39 -0.02 0.50 16 35 H 0.00 -0.12 7.50 -2.39 -0.02 -0.14 16 36 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 37 H 0.02 0.93 7.96 -2.39 -0.02 0.91 16 38 H 0.03 1.32 8.10 -2.39 -0.02 1.30 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 41 H 0.05 1.38 7.59 -2.39 -0.02 1.36 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.42 3.55 6.64 -92.71 -0.62 2.93 16 44 H 0.21 1.00 6.58 -2.91 -0.02 0.98 16 45 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.13 3.19 6.13 -2.38 -0.01 3.18 16 47 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.11 1.71 7.59 -2.39 -0.02 1.69 16 50 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -77.29 402.14 1.83 -75.46 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.33 Total: 12.46 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 8.06 Total: 7.49 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -8.54 Total: -128.31 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.05 Total: -15.97 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -77.29 1.83 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103688230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.417 kcal (2) G-P(sol) polarization free energy of solvation -77.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds