Wall clock time and date at job start Wed Apr 1 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.91380 * 2 1 4 4 C 1.55117 * 111.15984 * 236.07002 * 2 1 3 5 5 N 1.47426 * 104.94302 * 205.13085 * 4 2 1 6 6 C 1.34770 * 125.65349 * 203.96861 * 5 4 2 7 7 O 1.21549 * 120.00293 * 174.77825 * 6 5 4 8 8 C 1.47836 * 119.99891 * 354.78294 * 6 5 4 9 9 C 1.39973 * 120.93554 * 323.37268 * 8 6 5 10 10 N 1.32134 * 118.91789 * 179.74274 * 9 8 6 11 11 C 1.31882 * 120.96673 * 0.52130 * 10 9 8 12 12 N 1.31848 * 122.09836 * 359.74862 * 11 10 9 13 13 C 1.32159 * 120.96674 * 359.97438 * 12 11 10 14 14 C 1.50706 * 120.53567 * 180.02562 * 13 12 11 15 15 C 1.52995 * 117.50029 * 2.43856 * 14 13 12 16 16 C 1.52994 * 117.50124 * 293.77593 * 14 13 12 17 17 C 1.47028 * 108.69762 * 24.00605 * 5 4 2 18 18 C 1.54316 * 107.27329 * 358.93833 * 17 5 4 19 19 H 1.09003 * 110.71743 * 96.34825 * 18 17 5 20 20 C 1.53000 * 110.72079 * 219.43930 * 18 17 5 21 21 C 1.52999 * 109.47503 * 291.16205 * 20 18 17 22 22 N 1.46500 * 109.46755 * 179.97438 * 21 20 18 23 23 C 1.36940 * 119.99578 * 179.97438 * 22 21 20 24 24 H 1.08002 * 119.99851 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99837 * 179.97438 * 23 22 21 26 26 N 1.31620 * 120.00189 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99829 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47077 * 90.00045 * 27 25 23 29 29 H 1.48501 * 109.47020 * 210.00244 * 27 25 23 30 30 H 1.48496 * 109.47288 * 330.00300 * 27 25 23 31 31 H 1.09006 * 109.47097 * 296.10106 * 1 2 3 32 32 H 1.09003 * 109.46775 * 56.09544 * 1 2 3 33 33 H 1.08993 * 109.47022 * 176.09793 * 1 2 3 34 34 H 1.08999 * 110.42040 * 86.20703 * 4 2 1 35 35 H 1.08996 * 110.30844 * 324.00045 * 4 2 1 36 36 H 1.07993 * 120.53772 * 0.02562 * 9 8 6 37 37 H 1.08004 * 118.94753 * 179.72516 * 11 10 9 38 38 H 1.09005 * 115.54494 * 148.10649 * 14 13 12 39 39 H 1.09001 * 117.50004 * 359.97438 * 15 14 13 40 40 H 1.09000 * 117.50195 * 145.01855 * 15 14 13 41 41 H 1.09003 * 117.50312 * 214.98231 * 16 14 13 42 42 H 1.09003 * 117.49665 * 359.97438 * 16 14 13 43 43 H 1.08998 * 109.88047 * 239.51955 * 17 5 4 44 44 H 1.08996 * 109.88093 * 118.36217 * 17 5 4 45 45 H 1.09003 * 109.47013 * 171.15426 * 20 18 17 46 46 H 1.09000 * 109.46959 * 51.16555 * 20 18 17 47 47 H 1.09002 * 109.46633 * 299.99491 * 21 20 18 48 48 H 1.08994 * 109.47122 * 59.99940 * 21 20 18 49 49 H 0.96992 * 120.00414 * 0.02562 * 22 21 20 50 50 H 0.97002 * 119.99581 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8075 -1.2003 5 7 3.4299 -1.2474 -0.7705 6 6 4.4511 -1.5690 -1.5890 7 8 5.5439 -1.8285 -1.1243 8 6 4.2423 -1.6061 -3.0521 9 6 3.0363 -2.0639 -3.5954 10 7 2.8907 -2.0751 -4.9087 11 6 3.8639 -1.6734 -5.7028 12 7 5.0173 -1.2401 -5.2335 13 6 5.2467 -1.1900 -3.9329 14 6 6.5685 -0.6925 -3.4071 15 6 7.5955 -0.2010 -4.4291 16 6 7.8104 -1.5339 -3.7079 17 6 3.4671 -1.2781 0.6990 18 6 2.0862 -0.8079 1.2022 19 1 1.4451 -1.6614 1.4229 20 6 2.2350 0.0876 2.4339 21 6 2.7237 -0.7499 3.6173 22 7 2.8667 0.1077 4.7964 23 6 3.2939 -0.4256 5.9831 24 1 3.5258 -1.4783 6.0497 25 6 3.4300 0.3872 7.1002 26 7 3.1479 1.6702 7.0189 27 14 4.0134 -0.3402 8.7189 28 1 5.4947 -0.2638 8.7905 29 1 3.4232 0.4248 9.8466 30 1 3.5862 -1.7597 8.8064 31 1 -0.3633 0.4522 0.9229 32 1 -0.3633 0.5733 -0.8530 33 1 -0.3633 -1.0252 -0.0699 34 1 2.1643 -0.1733 -2.0837 35 1 1.4553 -1.6695 -1.4053 36 1 2.2362 -2.3980 -2.9516 37 1 3.7113 -1.7005 -6.7717 38 1 6.5290 -0.1790 -2.4464 39 1 7.3154 -0.2379 -5.4818 40 1 8.2320 0.6356 -4.1407 41 1 8.5881 -1.5739 -2.9452 42 1 7.6713 -2.4477 -4.2857 43 1 4.2434 -0.6057 1.0642 44 1 3.6612 -2.2937 1.0437 45 1 1.2706 0.5333 2.6777 46 1 2.9572 0.8766 2.2242 47 1 2.0014 -1.5389 3.8269 48 1 3.6880 -1.1955 3.3735 49 1 2.6581 1.0531 4.7367 50 1 3.2433 2.2381 7.7995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104965362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:58 Heat of formation + Delta-G solvation = 48.865853 kcal Electronic energy + Delta-G solvation = -29814.421700 eV Core-core repulsion = 25842.724043 eV Total energy + Delta-G solvation = -3971.697657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81176 -40.14327 -38.25258 -37.46979 -35.22462 -33.96718 -33.43282 -32.47716 -32.10280 -30.20510 -27.52582 -26.78798 -25.76272 -25.50459 -24.00937 -22.62605 -22.48979 -21.65504 -20.89049 -20.37354 -19.88491 -18.33606 -17.59943 -17.21389 -17.13551 -16.61591 -15.83250 -15.53615 -15.18861 -14.74479 -14.58995 -14.48901 -14.47629 -14.23918 -13.73928 -13.43503 -13.26851 -13.08723 -12.90880 -12.80529 -12.44903 -12.34090 -11.97390 -11.89258 -11.83125 -11.67331 -11.49730 -11.22292 -11.06484 -10.86218 -10.80935 -10.70713 -10.66416 -10.48187 -10.32209 -10.05378 -9.98416 -9.81274 -9.73130 -9.66628 -8.87920 -8.86402 -6.91704 -5.76134 -3.04721 0.07129 0.52228 2.40241 2.61512 3.17355 3.44410 3.44874 3.49428 3.50978 3.60368 3.62207 3.90971 4.00370 4.22398 4.39212 4.46249 4.55572 4.62531 4.65752 4.71352 4.75559 4.88202 4.99173 5.08966 5.15300 5.26253 5.30704 5.40829 5.41520 5.47334 5.56322 5.57053 5.66141 5.70501 5.76620 5.80142 5.82525 5.92364 5.94320 5.95046 5.98116 6.08798 6.24017 6.34402 6.35523 6.42391 6.82122 6.86327 7.18514 7.54059 7.70743 7.81698 8.43089 9.54074 10.12192 10.46421 11.46882 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002238 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.330116 B =12505.863927 C =13852.058039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.097 3.903 5 N -0.611 5.611 6 C 0.580 3.420 7 O -0.515 6.515 8 C -0.229 4.229 9 C 0.182 3.818 10 N -0.526 5.526 11 C 0.314 3.686 12 N -0.521 5.521 13 C 0.262 3.738 14 C -0.123 4.123 15 C -0.159 4.159 16 C -0.142 4.142 17 C 0.112 3.888 18 C -0.089 4.089 19 H 0.088 0.912 20 C -0.115 4.115 21 C 0.151 3.849 22 N -0.734 5.734 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.175 0.825 37 H 0.202 0.798 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -5.043 -28.464 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.026 4.026 5 N -0.345 5.345 6 C 0.367 3.633 7 O -0.391 6.391 8 C -0.237 4.237 9 C 0.015 3.985 10 N -0.239 5.239 11 C 0.028 3.972 12 N -0.234 5.234 13 C 0.116 3.884 14 C -0.142 4.142 15 C -0.196 4.196 16 C -0.180 4.180 17 C -0.009 4.009 18 C -0.109 4.109 19 H 0.107 0.893 20 C -0.153 4.153 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.192 0.808 37 H 0.219 0.781 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.942 -5.358 -29.127 29.631 hybrid contribution 0.163 -0.074 1.811 1.820 sum -0.780 -5.432 -27.316 27.862 Atomic orbital electron populations 1.21703 0.93325 1.02226 1.02595 1.22463 0.96475 0.99583 0.93385 0.89329 1.22670 0.83243 0.98306 0.98388 1.48394 1.12169 1.66186 1.07703 1.17373 0.83498 0.77892 0.84585 1.90841 1.23306 1.48521 1.76468 1.21512 0.97820 1.08321 0.96007 1.23668 0.94301 0.88827 0.91678 1.68478 1.33079 1.17533 1.04855 1.25209 0.83512 0.87340 1.01184 1.68244 1.23576 1.17065 1.14557 1.20904 0.93213 0.86567 0.87725 1.20999 0.85813 1.06414 1.00939 1.23054 1.00375 0.97807 0.98384 1.22903 0.96912 0.95305 1.02849 1.22195 0.98672 1.02456 0.77604 1.22306 0.94871 0.98911 0.94772 0.89347 1.21739 1.02102 0.98058 0.93430 1.20679 0.97115 0.93224 0.86591 1.42360 1.80874 1.08391 1.06195 1.19237 1.36498 0.93674 0.87564 0.91201 1.24747 1.02519 0.95655 0.98183 1.69661 1.55250 1.03843 1.29573 0.86185 0.78376 0.77982 0.83644 1.21698 1.21768 1.20757 0.91354 0.92455 0.92263 0.90880 0.90890 0.80802 0.78147 0.85145 0.87322 0.88161 0.87664 0.88795 0.90318 0.90850 0.91209 0.91648 0.96432 0.96330 0.78334 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.32 37.16 0.35 -0.69 16 2 C -0.10 -0.88 3.10 -88.36 -0.27 -1.15 16 3 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 4 C 0.10 0.78 4.73 -2.42 -0.01 0.77 16 5 N -0.61 -6.73 3.33 -171.51 -0.57 -7.30 16 6 C 0.58 7.28 7.12 -12.34 -0.09 7.19 16 7 O -0.52 -8.12 15.33 5.32 0.08 -8.03 16 8 C -0.23 -2.46 5.42 -104.69 -0.57 -3.03 16 9 C 0.18 1.61 9.50 -16.77 -0.16 1.45 16 10 N -0.53 -4.72 10.42 -14.24 -0.15 -4.87 16 11 C 0.31 2.57 12.27 -92.03 -1.13 1.44 16 12 N -0.52 -5.11 9.45 -10.48 -0.10 -5.21 16 13 C 0.26 2.85 6.53 -81.82 -0.53 2.32 16 14 C -0.12 -1.30 4.73 -91.77 -0.43 -1.73 16 15 C -0.16 -1.34 10.05 -26.70 -0.27 -1.61 16 16 C -0.14 -1.32 10.24 -26.70 -0.27 -1.59 16 17 C 0.11 1.38 5.74 -3.07 -0.02 1.37 16 18 C -0.09 -0.99 2.42 -88.79 -0.21 -1.20 16 19 H 0.09 0.93 8.04 -51.93 -0.42 0.51 16 20 C -0.12 -1.69 4.72 -26.73 -0.13 -1.81 16 21 C 0.15 2.94 6.13 -4.04 -0.02 2.92 16 22 N -0.73 -18.61 5.60 -59.91 -0.34 -18.95 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 27 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.07 0.54 7.28 -51.93 -0.38 0.17 16 35 H 0.07 0.46 6.81 -51.93 -0.35 0.10 16 36 H 0.18 1.17 5.89 -52.49 -0.31 0.86 16 37 H 0.20 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.13 1.53 7.01 -51.93 -0.36 1.17 16 39 H 0.11 0.91 7.58 -51.93 -0.39 0.52 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.12 7.73 -51.93 -0.40 0.72 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.00 8.00 -51.93 -0.42 0.59 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.37 7.58 -51.93 -0.39 -0.02 16 49 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -33.73 404.58 -11.22 -44.95 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.93 Total: 6.24 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.02 Total: -2.79 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.43 Total: -64.04 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.73 -11.22 -44.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104965362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.817 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds