Wall clock time and date at job start Wed Apr 1 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.91380 * 2 1 4 4 C 1.55117 * 111.15984 * 236.07002 * 2 1 3 5 5 N 1.47426 * 104.94302 * 205.13085 * 4 2 1 6 6 C 1.34770 * 125.65349 * 203.96861 * 5 4 2 7 7 O 1.21549 * 120.00293 * 174.77825 * 6 5 4 8 8 C 1.47836 * 119.99891 * 354.78294 * 6 5 4 9 9 C 1.39973 * 120.93554 * 323.37268 * 8 6 5 10 10 N 1.32134 * 118.91789 * 179.74274 * 9 8 6 11 11 C 1.31882 * 120.96673 * 0.52130 * 10 9 8 12 12 N 1.31848 * 122.09836 * 359.74862 * 11 10 9 13 13 C 1.32159 * 120.96674 * 359.97438 * 12 11 10 14 14 C 1.50706 * 120.53567 * 180.02562 * 13 12 11 15 15 C 1.52995 * 117.50029 * 2.43856 * 14 13 12 16 16 C 1.52994 * 117.50124 * 293.77593 * 14 13 12 17 17 C 1.47028 * 108.69762 * 24.00605 * 5 4 2 18 18 C 1.54316 * 107.27329 * 358.93833 * 17 5 4 19 19 H 1.09003 * 110.71743 * 96.34825 * 18 17 5 20 20 C 1.53000 * 110.72079 * 219.43930 * 18 17 5 21 21 C 1.52999 * 109.47503 * 291.16205 * 20 18 17 22 22 N 1.46500 * 109.46755 * 179.97438 * 21 20 18 23 23 C 1.36940 * 119.99578 * 179.97438 * 22 21 20 24 24 H 1.08002 * 119.99851 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99837 * 179.97438 * 23 22 21 26 26 N 1.31620 * 120.00189 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99829 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47077 * 90.00045 * 27 25 23 29 29 H 1.48501 * 109.47020 * 210.00244 * 27 25 23 30 30 H 1.48496 * 109.47288 * 330.00300 * 27 25 23 31 31 H 1.09006 * 109.47097 * 296.10106 * 1 2 3 32 32 H 1.09003 * 109.46775 * 56.09544 * 1 2 3 33 33 H 1.08993 * 109.47022 * 176.09793 * 1 2 3 34 34 H 1.08999 * 110.42040 * 86.20703 * 4 2 1 35 35 H 1.08996 * 110.30844 * 324.00045 * 4 2 1 36 36 H 1.07993 * 120.53772 * 0.02562 * 9 8 6 37 37 H 1.08004 * 118.94753 * 179.72516 * 11 10 9 38 38 H 1.09005 * 115.54494 * 148.10649 * 14 13 12 39 39 H 1.09001 * 117.50004 * 359.97438 * 15 14 13 40 40 H 1.09000 * 117.50195 * 145.01855 * 15 14 13 41 41 H 1.09003 * 117.50312 * 214.98231 * 16 14 13 42 42 H 1.09003 * 117.49665 * 359.97438 * 16 14 13 43 43 H 1.08998 * 109.88047 * 239.51955 * 17 5 4 44 44 H 1.08996 * 109.88093 * 118.36217 * 17 5 4 45 45 H 1.09003 * 109.47013 * 171.15426 * 20 18 17 46 46 H 1.09000 * 109.46959 * 51.16555 * 20 18 17 47 47 H 1.09002 * 109.46633 * 299.99491 * 21 20 18 48 48 H 1.08994 * 109.47122 * 59.99940 * 21 20 18 49 49 H 0.96992 * 120.00414 * 0.02562 * 22 21 20 50 50 H 0.97002 * 119.99581 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8075 -1.2003 5 7 3.4299 -1.2474 -0.7705 6 6 4.4511 -1.5690 -1.5890 7 8 5.5439 -1.8285 -1.1243 8 6 4.2423 -1.6061 -3.0521 9 6 3.0363 -2.0639 -3.5954 10 7 2.8907 -2.0751 -4.9087 11 6 3.8639 -1.6734 -5.7028 12 7 5.0173 -1.2401 -5.2335 13 6 5.2467 -1.1900 -3.9329 14 6 6.5685 -0.6925 -3.4071 15 6 7.5955 -0.2010 -4.4291 16 6 7.8104 -1.5339 -3.7079 17 6 3.4671 -1.2781 0.6990 18 6 2.0862 -0.8079 1.2022 19 1 1.4451 -1.6614 1.4229 20 6 2.2350 0.0876 2.4339 21 6 2.7237 -0.7499 3.6173 22 7 2.8667 0.1077 4.7964 23 6 3.2939 -0.4256 5.9831 24 1 3.5258 -1.4783 6.0497 25 6 3.4300 0.3872 7.1002 26 7 3.1479 1.6702 7.0189 27 14 4.0134 -0.3402 8.7189 28 1 5.4947 -0.2638 8.7905 29 1 3.4232 0.4248 9.8466 30 1 3.5862 -1.7597 8.8064 31 1 -0.3633 0.4522 0.9229 32 1 -0.3633 0.5733 -0.8530 33 1 -0.3633 -1.0252 -0.0699 34 1 2.1643 -0.1733 -2.0837 35 1 1.4553 -1.6695 -1.4053 36 1 2.2362 -2.3980 -2.9516 37 1 3.7113 -1.7005 -6.7717 38 1 6.5290 -0.1790 -2.4464 39 1 7.3154 -0.2379 -5.4818 40 1 8.2320 0.6356 -4.1407 41 1 8.5881 -1.5739 -2.9452 42 1 7.6713 -2.4477 -4.2857 43 1 4.2434 -0.6057 1.0642 44 1 3.6612 -2.2937 1.0437 45 1 1.2706 0.5333 2.6777 46 1 2.9572 0.8766 2.2242 47 1 2.0014 -1.5389 3.8269 48 1 3.6880 -1.1955 3.3735 49 1 2.6581 1.0531 4.7367 50 1 3.2433 2.2381 7.7995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104965362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:57 Heat of formation + Delta-G solvation = 28.912680 kcal Electronic energy + Delta-G solvation = -29815.286934 eV Core-core repulsion = 25842.724043 eV Total energy + Delta-G solvation = -3972.562892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.55520 -41.02125 -39.20889 -38.23395 -36.88597 -34.96118 -34.40888 -33.56592 -33.20836 -31.74648 -28.82224 -27.53170 -26.62397 -26.40783 -25.48195 -23.95865 -23.30338 -22.41435 -22.12785 -21.19525 -20.86572 -19.18639 -19.04621 -18.37423 -17.96619 -17.61197 -16.69039 -16.55833 -16.45514 -15.97377 -15.69442 -15.47017 -15.38823 -15.17426 -15.07579 -14.85950 -14.41470 -14.23712 -13.97485 -13.64125 -13.41659 -13.13460 -13.08155 -12.88827 -12.79210 -12.63077 -12.59077 -12.50722 -12.37316 -12.30338 -12.11161 -11.91120 -11.70581 -11.56437 -11.55612 -11.43672 -11.20731 -10.97999 -10.93544 -10.57092 -10.43948 -9.79583 -9.01270 -7.97016 -5.25831 -0.65310 -0.19330 1.45901 1.47958 1.49499 1.56286 1.73593 2.46371 2.54713 2.75139 2.88393 3.00651 3.19286 3.23053 3.36694 3.45378 3.57658 3.63593 3.71944 3.90331 3.96400 4.03344 4.09735 4.19481 4.25177 4.30921 4.41732 4.44627 4.52358 4.59563 4.62847 4.69896 4.70937 4.77795 4.84245 4.86826 4.88951 5.00678 5.03496 5.10888 5.15844 5.19002 5.22986 5.28147 5.34696 5.42669 5.48578 5.53313 5.71086 6.26112 6.30109 6.85160 6.88814 7.31917 8.08743 8.31193 9.26638 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002238 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.330116 B =12505.863927 C =13852.058039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.080 0.920 4 C 0.096 3.904 5 N -0.608 5.608 6 C 0.579 3.421 7 O -0.559 6.559 8 C -0.245 4.245 9 C 0.193 3.807 10 N -0.531 5.531 11 C 0.318 3.682 12 N -0.530 5.530 13 C 0.253 3.747 14 C -0.142 4.142 15 C -0.140 4.140 16 C -0.144 4.144 17 C 0.114 3.886 18 C -0.078 4.078 19 H 0.104 0.896 20 C -0.101 4.101 21 C 0.149 3.851 22 N -0.749 5.749 23 C -0.247 4.247 24 H 0.074 0.926 25 C -0.077 4.077 26 N -0.970 5.970 27 Si 0.973 3.027 28 H -0.288 1.288 29 H -0.293 1.293 30 H -0.269 1.269 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.198 0.802 37 H 0.238 0.762 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.024 0.976 48 H 0.013 0.987 49 H 0.374 0.626 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -6.082 -30.538 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.025 4.025 5 N -0.340 5.340 6 C 0.366 3.634 7 O -0.439 6.439 8 C -0.253 4.253 9 C 0.027 3.973 10 N -0.244 5.244 11 C 0.032 3.968 12 N -0.244 5.244 13 C 0.107 3.893 14 C -0.161 4.161 15 C -0.177 4.177 16 C -0.182 4.182 17 C -0.009 4.009 18 C -0.098 4.098 19 H 0.122 0.878 20 C -0.139 4.139 21 C 0.023 3.977 22 N -0.391 5.391 23 C -0.378 4.378 24 H 0.092 0.908 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.802 3.198 28 H -0.215 1.215 29 H -0.219 1.219 30 H -0.193 1.193 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.215 0.785 37 H 0.254 0.746 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.031 0.969 49 H 0.205 0.795 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.525 -6.421 -31.245 31.997 hybrid contribution 0.648 0.229 2.377 2.474 sum -1.877 -6.191 -28.868 29.584 Atomic orbital electron populations 1.21692 0.91582 1.03376 1.02817 1.22419 0.97733 0.98790 0.92196 0.90207 1.22907 0.81765 0.99543 0.98283 1.48422 1.13184 1.65509 1.06923 1.17693 0.83044 0.77137 0.85482 1.90810 1.25068 1.50632 1.77347 1.21379 0.99021 1.10271 0.94619 1.23989 0.93889 0.87432 0.92030 1.68598 1.33242 1.17855 1.04746 1.25978 0.82624 0.85519 1.02676 1.68305 1.24465 1.17798 1.13795 1.20981 0.93230 0.86687 0.88400 1.20953 0.86702 1.07549 1.00898 1.23100 0.99012 0.97545 0.98020 1.22929 0.96373 0.95789 1.03083 1.22051 0.98677 1.01346 0.78816 1.22193 0.94473 0.99064 0.94020 0.87778 1.21568 1.01561 0.97647 0.93102 1.20868 0.97061 0.93366 0.86404 1.42613 1.80716 1.08598 1.07217 1.19641 1.35514 0.93941 0.88754 0.90819 1.25589 1.03497 0.96140 1.01692 1.69813 1.56880 1.05087 1.30256 0.85139 0.77612 0.77754 0.79277 1.21537 1.21909 1.19343 0.92392 0.90832 0.90852 0.89640 0.87911 0.78547 0.74649 0.87204 0.86876 0.86905 0.87589 0.88834 0.93133 0.91579 0.90786 0.92838 0.95779 0.96877 0.79455 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.32 71.98 0.67 -0.92 16 2 C -0.09 -1.43 3.10 -9.33 -0.03 -1.46 16 3 H 0.08 1.41 8.05 -2.39 -0.02 1.39 16 4 C 0.10 1.30 4.73 86.93 0.41 1.71 16 5 N -0.61 -13.04 3.33 -814.81 -2.71 -15.75 16 6 C 0.58 14.69 7.12 86.78 0.62 15.30 16 7 O -0.56 -18.58 15.33 -3.87 -0.06 -18.64 16 8 C -0.25 -5.07 5.42 -19.91 -0.11 -5.18 16 9 C 0.19 2.97 9.50 85.07 0.81 3.77 16 10 N -0.53 -8.02 10.42 -198.98 -2.07 -10.09 16 11 C 0.32 4.35 12.27 180.84 2.22 6.57 16 12 N -0.53 -9.57 9.45 -187.07 -1.77 -11.33 16 13 C 0.25 5.40 6.53 42.92 0.28 5.68 16 14 C -0.14 -3.09 4.73 -11.54 -0.05 -3.14 16 15 C -0.14 -2.29 10.05 30.62 0.31 -1.98 16 16 C -0.14 -2.72 10.24 30.62 0.31 -2.41 16 17 C 0.11 2.83 5.74 86.72 0.50 3.33 16 18 C -0.08 -1.65 2.42 -9.61 -0.02 -1.67 16 19 H 0.10 1.94 8.04 -2.39 -0.02 1.92 16 20 C -0.10 -2.95 4.72 30.59 0.14 -2.80 16 21 C 0.15 5.85 6.13 86.38 0.53 6.38 16 22 N -0.75 -38.67 5.60 -343.45 -1.92 -40.60 16 23 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 24 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 26 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 27 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 30 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.09 1.01 7.28 -2.39 -0.02 1.00 16 35 H 0.10 0.84 6.81 -2.39 -0.02 0.83 16 36 H 0.20 1.93 5.89 -2.91 -0.02 1.92 16 37 H 0.24 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.11 2.81 7.01 -2.38 -0.02 2.79 16 39 H 0.11 1.76 7.58 -2.39 -0.02 1.74 16 40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.54 7.73 -2.39 -0.02 1.52 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.05 1.69 8.00 -2.39 -0.02 1.67 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.01 0.54 7.58 -2.39 -0.02 0.52 16 49 H 0.37 20.38 7.67 -92.71 -0.71 19.66 16 50 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.66 404.58 1.90 -72.75 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.24 Total: 28.70 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 7.89 Total: 5.91 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -8.19 Total: -137.55 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.06 Total: -18.64 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -74.66 1.90 -72.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104965362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.666 kcal (2) G-P(sol) polarization free energy of solvation -74.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds