Wall clock time and date at job start Wed Apr 1 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47369 * 239.99842 * 2 1 3 5 5 O 1.21282 * 119.99965 * 240.00301 * 4 2 1 6 6 N 1.34780 * 120.00011 * 59.99752 * 4 2 1 7 7 C 1.48114 * 127.84209 * 359.97438 * 6 4 2 8 8 C 1.54334 * 104.69523 * 140.27691 * 7 6 4 9 9 H 1.08992 * 111.85384 * 262.44668 * 8 7 6 10 10 C 1.54161 * 108.85859 * 137.43691 * 8 7 6 11 11 C 1.54840 * 104.33051 * 271.22959 * 10 8 7 12 12 C 1.55774 * 102.31628 * 321.14053 * 11 10 8 13 13 C 1.54167 * 103.88256 * 39.34213 * 12 11 10 14 14 C 1.52996 * 111.82238 * 212.53501 * 13 12 11 15 15 N 1.46498 * 109.47059 * 299.25800 * 14 13 12 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 13 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.48117 * 127.84172 * 179.97438 * 6 4 2 25 25 C 1.50697 * 109.46774 * 119.99734 * 2 1 3 26 26 C 1.38595 * 120.80334 * 59.72374 * 25 2 1 27 27 N 1.32331 * 119.10948 * 179.71620 * 26 25 2 28 28 C 1.31795 * 120.81684 * 0.56902 * 27 26 25 29 29 N 1.31799 * 121.75461 * 359.69934 * 28 27 26 30 30 C 1.32335 * 120.81430 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47527 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47122 * 300.00267 * 1 2 3 33 33 H 1.09008 * 109.46763 * 59.99644 * 1 2 3 34 34 H 1.09000 * 110.39099 * 21.47649 * 7 6 4 35 35 H 1.08997 * 110.39437 * 259.07970 * 7 6 4 36 36 H 1.08999 * 110.46635 * 29.94664 * 10 8 7 37 37 H 1.09002 * 110.45680 * 152.52121 * 10 8 7 38 38 H 1.09004 * 110.75482 * 80.13041 * 11 10 8 39 39 H 1.08994 * 110.76450 * 203.31905 * 11 10 8 40 40 H 1.09007 * 111.74301 * 280.25281 * 12 11 10 41 41 H 1.08994 * 109.60095 * 157.39770 * 12 11 10 42 42 H 1.09004 * 109.47066 * 179.26068 * 14 13 12 43 43 H 1.08994 * 109.46974 * 59.26216 * 14 13 12 44 44 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 46 46 H 1.09002 * 110.38843 * 100.92817 * 24 6 4 47 47 H 1.08993 * 110.39475 * 338.53730 * 24 6 4 48 48 H 1.08010 * 120.44463 * 359.97438 * 26 25 2 49 49 H 1.08001 * 119.12914 * 179.73270 * 28 27 26 50 50 H 1.08003 * 120.44501 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.8734 0.9275 -2.7905 8 6 1.5825 1.5774 -3.9974 9 1 2.2210 2.4071 -3.6943 10 6 0.5202 1.9966 -5.0330 11 6 0.3443 0.7462 -5.9292 12 6 1.8047 0.2187 -6.0539 13 6 2.3955 0.4288 -4.6455 14 6 3.8912 0.7464 -4.6976 15 7 4.6064 -0.3715 -5.3181 16 6 5.9650 -0.3105 -5.4786 17 1 6.5097 0.5598 -5.1436 18 6 6.6420 -1.3673 -6.0717 19 7 5.9779 -2.4277 -6.4804 20 14 8.4953 -1.2844 -6.2899 21 1 9.1443 -1.1430 -4.9617 22 1 8.9728 -2.5288 -6.9447 23 1 8.8421 -0.1153 -7.1374 24 6 2.1011 -0.8067 -3.7693 25 6 2.0323 -0.7103 1.2305 26 6 1.7029 -2.0353 1.4693 27 7 2.1670 -2.6279 2.5576 28 6 2.9235 -1.9708 3.4138 29 7 3.2525 -0.7090 3.2224 30 6 2.8297 -0.0527 2.1538 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.8404 1.6214 -1.9506 35 1 -0.1337 0.6141 -3.0653 36 1 -0.4181 2.2451 -4.5372 37 1 0.8758 2.8413 -5.6230 38 1 -0.3057 0.0149 -5.4487 39 1 -0.0466 1.0241 -6.9079 40 1 2.3751 0.7802 -6.7939 41 1 1.7902 -0.8414 -6.3068 42 1 4.2655 0.9002 -3.6855 43 1 4.0503 1.6505 -5.2852 44 1 4.1171 -1.1531 -5.6193 45 1 6.4510 -3.1663 -6.8945 46 1 1.2841 -1.3887 -4.1957 47 1 2.9948 -1.4224 -3.6684 48 1 1.0793 -2.5780 0.7742 49 1 3.2839 -2.4800 4.2954 50 1 3.1033 0.9811 2.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112515850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:01 Heat of formation + Delta-G solvation = 25.887025 kcal Electronic energy + Delta-G solvation = -31092.407415 eV Core-core repulsion = 27119.713321 eV Total energy + Delta-G solvation = -3972.694094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38317 -40.58263 -38.77560 -35.09055 -34.69791 -34.34997 -33.80810 -31.70045 -30.51265 -29.83073 -28.87201 -26.15546 -25.61734 -25.28738 -24.66555 -23.91284 -22.58325 -21.96927 -20.18567 -19.31278 -18.55197 -17.97476 -17.77415 -17.16980 -16.50353 -16.14348 -15.75952 -15.15664 -14.88212 -14.75592 -14.48583 -14.17478 -13.87968 -13.79006 -13.73075 -13.64517 -13.21632 -13.10800 -12.95589 -12.81987 -12.63019 -12.29052 -11.99003 -11.88613 -11.61712 -11.17338 -10.97953 -10.92628 -10.91371 -10.81381 -10.78531 -10.65686 -10.52053 -10.38638 -10.28862 -9.96231 -9.80724 -9.62241 -9.50696 -9.34242 -8.84611 -8.61729 -6.89114 -5.73439 -3.01756 0.71867 0.97178 2.63945 2.93401 3.46556 3.51138 3.51909 3.66152 3.97253 4.07636 4.22704 4.26388 4.39934 4.44432 4.55251 4.61747 4.73286 4.74514 4.82186 5.07652 5.08480 5.19737 5.23940 5.26503 5.29695 5.37378 5.40748 5.51320 5.52083 5.57320 5.62896 5.65112 5.71512 5.79472 5.87990 5.96286 6.01022 6.13937 6.16469 6.22171 6.25382 6.26018 6.46724 6.51212 6.59559 6.75458 6.80176 6.82518 7.62152 7.72049 7.93226 8.19345 8.45335 9.56750 10.13555 10.48281 11.49345 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.003607 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.121740 B = 7760.440429 C =10159.542537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 H 0.109 0.891 4 C 0.535 3.465 5 O -0.527 6.527 6 N -0.616 5.616 7 C 0.104 3.896 8 C -0.100 4.100 9 H 0.088 0.912 10 C -0.114 4.114 11 C -0.126 4.126 12 C -0.105 4.105 13 C -0.074 4.074 14 C 0.173 3.827 15 N -0.728 5.728 16 C -0.240 4.240 17 H 0.068 0.932 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.115 3.885 25 C -0.170 4.170 26 C 0.182 3.818 27 N -0.520 5.520 28 C 0.288 3.712 29 N -0.521 5.521 30 C 0.155 3.845 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.016 0.984 43 H 0.021 0.979 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.163 0.837 49 H 0.195 0.805 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.452 9.690 12.120 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 H 0.127 0.873 4 C 0.322 3.678 5 O -0.402 6.402 6 N -0.349 5.349 7 C -0.019 4.019 8 C -0.120 4.120 9 H 0.107 0.893 10 C -0.152 4.152 11 C -0.164 4.164 12 C -0.143 4.143 13 C -0.075 4.075 14 C 0.046 3.954 15 N -0.373 5.373 16 C -0.371 4.371 17 H 0.086 0.914 18 C -0.207 4.207 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.007 4.007 25 C -0.174 4.174 26 C 0.016 3.984 27 N -0.233 5.233 28 C 0.001 3.999 29 N -0.235 5.235 30 C -0.011 4.011 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.180 0.820 49 H 0.212 0.788 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.522 8.654 13.133 23.545 hybrid contribution 0.757 0.218 -1.075 1.333 sum -16.765 8.872 12.058 22.476 Atomic orbital electron populations 1.21942 0.91623 1.03398 1.03459 1.20076 0.97886 1.00304 0.89818 0.87277 1.19902 0.80355 0.84655 0.82879 1.90796 1.37406 1.26368 1.85653 1.48889 1.50930 1.29711 1.05375 1.22653 0.94371 0.87310 0.97582 1.22744 0.96573 0.97985 0.94655 0.89332 1.22338 0.97637 0.98316 0.96864 1.22683 0.97332 0.97037 0.99328 1.22473 0.94108 1.01927 0.95766 1.22255 0.96737 0.93650 0.94885 1.20552 0.87287 0.91829 0.95770 1.42305 1.04761 1.17981 1.72216 1.19144 0.83683 1.01603 1.32691 0.91423 1.24704 0.97833 0.96613 1.01570 1.69640 1.34593 1.07470 1.46367 0.86291 0.85666 0.76668 0.77701 1.21328 1.21669 1.21316 1.22548 1.01449 0.96066 0.80589 1.21102 1.01430 0.97200 0.97716 1.22979 0.92681 0.90727 0.92015 1.68453 1.11657 1.39098 1.04089 1.24975 0.90224 0.87531 0.97186 1.68429 1.22618 1.10592 1.21820 1.23099 0.89717 1.00095 0.88180 0.91740 0.91185 0.90668 0.90537 0.90777 0.91725 0.91260 0.91745 0.91690 0.90403 0.91284 0.96649 0.96133 0.78180 0.93488 0.91453 0.88408 0.82006 0.78845 0.81643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.76 37.16 0.33 -0.66 16 2 C -0.06 -0.56 2.26 -92.93 -0.21 -0.77 16 3 H 0.11 0.83 7.76 -51.93 -0.40 0.42 16 4 C 0.53 7.64 7.15 -10.99 -0.08 7.56 16 5 O -0.53 -10.22 15.44 5.56 0.09 -10.14 16 6 N -0.62 -8.10 3.30 -169.45 -0.56 -8.66 16 7 C 0.10 0.95 4.64 -2.46 -0.01 0.94 16 8 C -0.10 -1.07 3.59 -88.30 -0.32 -1.38 16 9 H 0.09 0.95 7.88 -51.93 -0.41 0.54 16 10 C -0.11 -1.00 6.08 -25.15 -0.15 -1.16 16 11 C -0.13 -1.28 6.86 -24.28 -0.17 -1.44 16 12 C -0.10 -1.47 5.19 -24.64 -0.13 -1.60 16 13 C -0.07 -1.09 0.62 -152.20 -0.09 -1.19 16 14 C 0.17 3.42 5.14 -4.04 -0.02 3.40 16 15 N -0.73 -18.25 4.93 -59.91 -0.30 -18.55 16 16 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 20 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 C 0.12 1.83 5.81 -2.47 -0.01 1.81 16 25 C -0.17 -1.93 4.40 -104.36 -0.46 -2.39 16 26 C 0.18 2.30 9.28 -17.20 -0.16 2.14 16 27 N -0.52 -6.89 10.44 -14.58 -0.15 -7.04 16 28 C 0.29 3.41 12.29 -92.15 -1.13 2.28 16 29 N -0.52 -6.41 10.44 -14.58 -0.15 -6.56 16 30 C 0.15 1.70 10.96 -17.20 -0.19 1.52 16 31 H 0.06 0.47 7.46 -51.93 -0.39 0.08 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.42 5.34 -51.92 -0.28 0.15 16 34 H 0.08 0.52 6.55 -51.93 -0.34 0.17 16 35 H 0.07 0.57 7.49 -51.93 -0.39 0.18 16 36 H 0.06 0.44 7.74 -51.93 -0.40 0.04 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.21 7.96 -51.93 -0.41 0.80 16 41 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 10.07 6.91 -40.82 -0.28 9.78 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 47 H 0.10 2.04 6.99 -51.93 -0.36 1.68 16 48 H 0.16 1.91 7.64 -52.48 -0.40 1.51 16 49 H 0.20 1.63 8.06 -52.49 -0.42 1.20 16 50 H 0.17 1.32 8.01 -52.48 -0.42 0.90 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -35.62 393.22 -10.30 -45.91 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.80 Total: 7.30 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.05 Total: 1.67 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.43 Total: -68.59 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.62 -10.30 -45.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112515850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.797 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds