Wall clock time and date at job start Wed Apr 1 2020 03:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47369 * 239.99842 * 2 1 3 5 5 O 1.21282 * 119.99965 * 240.00301 * 4 2 1 6 6 N 1.34780 * 120.00011 * 59.99752 * 4 2 1 7 7 C 1.48114 * 127.84209 * 359.97438 * 6 4 2 8 8 C 1.54334 * 104.69523 * 140.27691 * 7 6 4 9 9 H 1.08992 * 111.85384 * 262.44668 * 8 7 6 10 10 C 1.54161 * 108.85859 * 137.43691 * 8 7 6 11 11 C 1.54840 * 104.33051 * 271.22959 * 10 8 7 12 12 C 1.55774 * 102.31628 * 321.14053 * 11 10 8 13 13 C 1.54167 * 103.88256 * 39.34213 * 12 11 10 14 14 C 1.52996 * 111.82238 * 212.53501 * 13 12 11 15 15 N 1.46498 * 109.47059 * 299.25800 * 14 13 12 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 13 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.48117 * 127.84172 * 179.97438 * 6 4 2 25 25 C 1.50697 * 109.46774 * 119.99734 * 2 1 3 26 26 C 1.38595 * 120.80334 * 59.72374 * 25 2 1 27 27 N 1.32331 * 119.10948 * 179.71620 * 26 25 2 28 28 C 1.31795 * 120.81684 * 0.56902 * 27 26 25 29 29 N 1.31799 * 121.75461 * 359.69934 * 28 27 26 30 30 C 1.32335 * 120.81430 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47527 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47122 * 300.00267 * 1 2 3 33 33 H 1.09008 * 109.46763 * 59.99644 * 1 2 3 34 34 H 1.09000 * 110.39099 * 21.47649 * 7 6 4 35 35 H 1.08997 * 110.39437 * 259.07970 * 7 6 4 36 36 H 1.08999 * 110.46635 * 29.94664 * 10 8 7 37 37 H 1.09002 * 110.45680 * 152.52121 * 10 8 7 38 38 H 1.09004 * 110.75482 * 80.13041 * 11 10 8 39 39 H 1.08994 * 110.76450 * 203.31905 * 11 10 8 40 40 H 1.09007 * 111.74301 * 280.25281 * 12 11 10 41 41 H 1.08994 * 109.60095 * 157.39770 * 12 11 10 42 42 H 1.09004 * 109.47066 * 179.26068 * 14 13 12 43 43 H 1.08994 * 109.46974 * 59.26216 * 14 13 12 44 44 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 46 46 H 1.09002 * 110.38843 * 100.92817 * 24 6 4 47 47 H 1.08993 * 110.39475 * 338.53730 * 24 6 4 48 48 H 1.08010 * 120.44463 * 359.97438 * 26 25 2 49 49 H 1.08001 * 119.12914 * 179.73270 * 28 27 26 50 50 H 1.08003 * 120.44501 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.8734 0.9275 -2.7905 8 6 1.5825 1.5774 -3.9974 9 1 2.2210 2.4071 -3.6943 10 6 0.5202 1.9966 -5.0330 11 6 0.3443 0.7462 -5.9292 12 6 1.8047 0.2187 -6.0539 13 6 2.3955 0.4288 -4.6455 14 6 3.8912 0.7464 -4.6976 15 7 4.6064 -0.3715 -5.3181 16 6 5.9650 -0.3105 -5.4786 17 1 6.5097 0.5598 -5.1436 18 6 6.6420 -1.3673 -6.0717 19 7 5.9779 -2.4277 -6.4804 20 14 8.4953 -1.2844 -6.2899 21 1 9.1443 -1.1430 -4.9617 22 1 8.9728 -2.5288 -6.9447 23 1 8.8421 -0.1153 -7.1374 24 6 2.1011 -0.8067 -3.7693 25 6 2.0323 -0.7103 1.2305 26 6 1.7029 -2.0353 1.4693 27 7 2.1670 -2.6279 2.5576 28 6 2.9235 -1.9708 3.4138 29 7 3.2525 -0.7090 3.2224 30 6 2.8297 -0.0527 2.1538 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.8404 1.6214 -1.9506 35 1 -0.1337 0.6141 -3.0653 36 1 -0.4181 2.2451 -4.5372 37 1 0.8758 2.8413 -5.6230 38 1 -0.3057 0.0149 -5.4487 39 1 -0.0466 1.0241 -6.9079 40 1 2.3751 0.7802 -6.7939 41 1 1.7902 -0.8414 -6.3068 42 1 4.2655 0.9002 -3.6855 43 1 4.0503 1.6505 -5.2852 44 1 4.1171 -1.1531 -5.6193 45 1 6.4510 -3.1663 -6.8945 46 1 1.2841 -1.3887 -4.1957 47 1 2.9948 -1.4224 -3.6684 48 1 1.0793 -2.5780 0.7742 49 1 3.2839 -2.4800 4.2954 50 1 3.1033 0.9811 2.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112515850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:00 Heat of formation + Delta-G solvation = 2.246712 kcal Electronic energy + Delta-G solvation = -31093.432536 eV Core-core repulsion = 27119.713321 eV Total energy + Delta-G solvation = -3973.719215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.29660 -41.60936 -39.87632 -36.52562 -35.91542 -35.48598 -34.71050 -33.49939 -31.49971 -30.96132 -30.12220 -27.48452 -26.55021 -26.30767 -25.61289 -25.36128 -23.92432 -23.09734 -21.10508 -20.30515 -19.84977 -19.15987 -18.78714 -18.59983 -17.62229 -17.07842 -16.88204 -16.70095 -16.06508 -15.78244 -15.69107 -15.29945 -15.10922 -15.01308 -14.83372 -14.67335 -14.57577 -14.52200 -13.91966 -13.75383 -13.48562 -13.32672 -13.09434 -13.01898 -12.91375 -12.73481 -12.59809 -12.25884 -12.11483 -11.85421 -11.79828 -11.72581 -11.69430 -11.62833 -11.50316 -11.45855 -11.30479 -10.96431 -10.84230 -10.41366 -10.25650 -9.71969 -9.02292 -7.98990 -5.26969 -0.15314 0.07494 1.40789 1.44694 1.50483 1.58217 1.92755 2.51530 2.76969 3.17446 3.23658 3.31729 3.34279 3.45610 3.49288 3.61709 3.67698 3.72873 3.93750 4.13183 4.17586 4.23408 4.24688 4.30041 4.38098 4.46127 4.49070 4.51181 4.57298 4.73488 4.74440 4.78025 4.79460 4.86902 4.90701 4.96868 5.00096 5.07923 5.15393 5.23438 5.26092 5.32982 5.34477 5.38295 5.40780 5.42965 5.54796 5.57803 5.92000 6.23250 6.60582 7.04300 7.12529 7.29648 8.06885 8.29565 9.24361 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.003607 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.121740 B = 7760.440429 C =10159.542537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 H 0.141 0.859 4 C 0.526 3.474 5 O -0.593 6.593 6 N -0.614 5.614 7 C 0.102 3.898 8 C -0.094 4.094 9 H 0.093 0.907 10 C -0.103 4.103 11 C -0.116 4.116 12 C -0.107 4.107 13 C -0.071 4.071 14 C 0.174 3.826 15 N -0.739 5.739 16 C -0.248 4.248 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.120 3.880 25 C -0.174 4.174 26 C 0.164 3.836 27 N -0.545 5.545 28 C 0.279 3.721 29 N -0.536 5.536 30 C 0.151 3.849 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.043 0.957 42 H -0.001 1.001 43 H 0.024 0.976 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.078 0.922 47 H 0.035 0.965 48 H 0.159 0.841 49 H 0.220 0.780 50 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.834 13.163 13.045 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 H 0.159 0.841 4 C 0.316 3.684 5 O -0.474 6.474 6 N -0.346 5.346 7 C -0.019 4.019 8 C -0.113 4.113 9 H 0.111 0.889 10 C -0.141 4.141 11 C -0.153 4.153 12 C -0.146 4.146 13 C -0.072 4.072 14 C 0.047 3.953 15 N -0.382 5.382 16 C -0.380 4.380 17 H 0.089 0.911 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.198 1.198 24 C -0.004 4.004 25 C -0.178 4.178 26 C -0.001 4.001 27 N -0.258 5.258 28 C -0.008 4.008 29 N -0.249 5.249 30 C -0.015 4.015 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.042 0.958 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.054 0.946 48 H 0.176 0.824 49 H 0.236 0.764 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.950 12.207 14.059 27.288 hybrid contribution 1.535 -0.869 -1.374 2.236 sum -18.415 11.338 12.684 25.071 Atomic orbital electron populations 1.21980 0.88863 1.03494 1.05547 1.20145 0.99903 1.00563 0.86098 0.84092 1.20865 0.79276 0.84052 0.84249 1.90769 1.40463 1.29468 1.86656 1.48997 1.50900 1.30596 1.04084 1.23044 0.94461 0.86140 0.98250 1.22772 0.96635 0.96257 0.95652 0.88909 1.22334 0.98484 0.97305 0.95945 1.22654 0.94000 0.97929 1.00750 1.22430 0.97240 1.00334 0.94547 1.22144 0.93872 0.95363 0.95823 1.20681 0.90469 0.90160 0.93948 1.42502 1.04168 1.19139 1.72374 1.19570 0.85380 1.01478 1.31585 0.91113 1.25537 1.02356 0.96504 1.02165 1.69808 1.36126 1.08145 1.47744 0.85250 0.80303 0.76811 0.77649 1.21049 1.21926 1.19808 1.22272 0.99205 0.96039 0.82844 1.21300 1.01314 0.96761 0.98459 1.23102 0.93201 0.91747 0.92059 1.68446 1.12659 1.39910 1.04815 1.25511 0.89832 0.87757 0.97697 1.68495 1.23041 1.10815 1.22593 1.23677 0.88803 1.01421 0.87566 0.92797 0.88938 0.88583 0.86614 0.87811 0.87816 0.91010 0.90401 0.90515 0.92564 0.93775 0.98306 0.95823 0.79367 0.94039 0.90368 0.94633 0.82374 0.76392 0.78453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.76 71.98 0.63 -0.71 16 2 C -0.04 -0.74 2.26 -12.29 -0.03 -0.77 16 3 H 0.14 1.46 7.76 -2.39 -0.02 1.44 16 4 C 0.53 14.78 7.15 87.66 0.63 15.40 16 5 O -0.59 -24.30 15.44 -3.04 -0.05 -24.35 16 6 N -0.61 -15.35 3.30 -808.40 -2.67 -18.03 16 7 C 0.10 1.38 4.64 86.52 0.40 1.78 16 8 C -0.09 -1.68 3.59 -9.29 -0.03 -1.71 16 9 H 0.09 1.64 7.88 -2.39 -0.02 1.63 16 10 C -0.10 -1.31 6.08 31.62 0.19 -1.12 16 11 C -0.12 -1.98 6.86 32.18 0.22 -1.76 16 12 C -0.11 -3.02 5.19 31.95 0.17 -2.86 16 13 C -0.07 -2.09 0.62 -50.69 -0.03 -2.12 16 14 C 0.17 7.10 5.14 86.38 0.44 7.54 16 15 N -0.74 -39.09 4.93 -343.46 -1.69 -40.79 16 16 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 19 N -0.97 -61.73 13.06 21.65 0.28 -61.44 16 20 Si 0.97 48.33 29.55 68.60 2.03 50.36 16 21 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 24 C 0.12 3.91 5.81 86.51 0.50 4.42 16 25 C -0.17 -3.75 4.40 -19.69 -0.09 -3.84 16 26 C 0.16 4.23 9.28 84.70 0.79 5.02 16 27 N -0.54 -14.76 10.44 -200.04 -2.09 -16.85 16 28 C 0.28 6.55 12.29 180.88 2.22 8.77 16 29 N -0.54 -12.66 10.44 -200.04 -2.09 -14.75 16 30 C 0.15 3.06 10.96 84.70 0.93 3.99 16 31 H 0.05 0.65 7.46 -2.39 -0.02 0.64 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.10 0.52 5.34 -2.38 -0.01 0.51 16 34 H 0.12 0.76 6.55 -2.39 -0.02 0.75 16 35 H 0.10 0.90 7.49 -2.39 -0.02 0.89 16 36 H 0.10 0.64 7.74 -2.39 -0.02 0.62 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.80 7.96 -2.38 -0.02 1.78 16 41 H 0.04 1.42 7.79 -2.39 -0.02 1.41 16 42 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.37 21.04 6.91 -92.71 -0.64 20.40 16 45 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.08 2.33 7.67 -2.39 -0.02 2.31 16 47 H 0.03 1.61 6.99 -2.39 -0.02 1.59 16 48 H 0.16 3.98 7.64 -2.91 -0.02 3.96 16 49 H 0.22 3.58 8.06 -2.91 -0.02 3.56 16 50 H 0.20 2.50 8.01 -2.91 -0.02 2.48 16 Total: -1.00 -85.63 393.22 2.28 -83.35 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.31 Total: 28.15 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 8.25 Total: 14.35 kcal Atomic # 7 Polarization: -143.60 SS G_CDS: -8.26 Total: -151.86 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -85.63 2.28 -83.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112515850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.597 kcal (2) G-P(sol) polarization free energy of solvation -85.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds