Wall clock time and date at job start Wed Apr 1 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 115.56317 * 2 1 4 4 C 1.52996 * 117.49512 * 145.69312 * 2 1 3 5 5 C 1.53001 * 60.00285 * 107.48470 * 4 2 1 6 6 H 1.08997 * 117.49810 * 252.48525 * 5 4 2 7 7 C 1.50707 * 117.49881 * 107.48183 * 5 4 2 8 8 O 1.21280 * 119.99873 * 291.39809 * 7 5 4 9 9 N 1.34777 * 119.99633 * 111.39441 * 7 5 4 10 10 C 1.46494 * 119.99840 * 180.02562 * 9 7 5 11 11 H 1.08993 * 110.63293 * 31.89178 * 10 9 7 12 12 C 1.55148 * 110.70555 * 268.59695 * 10 9 7 13 13 C 1.54906 * 101.65558 * 205.96488 * 12 10 9 14 14 N 1.47848 * 104.79222 * 37.06809 * 13 12 10 15 15 C 1.39003 * 110.99578 * 213.63233 * 14 13 12 16 16 C 1.39136 * 119.71148 * 300.86791 * 15 14 13 17 17 C 1.38292 * 119.09879 * 179.97438 * 16 15 14 18 18 C 1.38884 * 118.50799 * 0.02562 * 17 16 15 19 19 C 1.38028 * 119.32474 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.56722 * 180.02562 * 19 18 17 21 21 N 1.46510 * 109.47060 * 95.00235 * 20 19 18 22 22 C 1.36935 * 119.99965 * 180.02562 * 21 20 19 23 23 H 1.08005 * 119.99882 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99994 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99913 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99959 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47067 * 60.00084 * 26 24 22 28 28 H 1.48505 * 109.47110 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47234 * 300.00072 * 26 24 22 30 30 N 1.31965 * 120.86143 * 0.02562 * 19 18 17 31 31 C 1.47435 * 108.57168 * 335.90442 * 14 13 12 32 32 H 1.09000 * 109.47168 * 205.68678 * 1 2 3 33 33 H 1.08997 * 109.46739 * 325.68599 * 1 2 3 34 34 H 1.08994 * 109.47385 * 85.68641 * 1 2 3 35 35 H 1.08999 * 117.50410 * 359.97438 * 4 2 1 36 36 H 1.09001 * 117.51433 * 214.96799 * 4 2 1 37 37 H 0.97003 * 119.99795 * 359.97438 * 9 7 5 38 38 H 1.09000 * 110.98620 * 324.05989 * 12 10 9 39 39 H 1.08996 * 110.98684 * 87.87326 * 12 10 9 40 40 H 1.08996 * 110.37176 * 278.24227 * 13 12 10 41 41 H 1.08990 * 110.37148 * 155.90144 * 13 12 10 42 42 H 1.07998 * 120.45148 * 359.96115 * 16 15 14 43 43 H 1.07997 * 120.74953 * 180.02562 * 17 16 15 44 44 H 1.07997 * 120.33862 * 179.97438 * 18 17 16 45 45 H 1.08993 * 109.46842 * 214.99985 * 20 19 18 46 46 H 1.08994 * 109.47148 * 335.00299 * 20 19 18 47 47 H 0.97000 * 119.99924 * 359.97438 * 21 20 19 48 48 H 0.97004 * 119.99935 * 179.97438 * 25 24 22 49 49 H 1.09003 * 109.88733 * 120.39411 * 31 14 13 50 50 H 1.08995 * 109.88830 * 241.58434 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1211 -0.7651 6 1 1.6114 -1.8587 -1.2683 7 6 3.5292 -0.7811 -1.4609 8 8 3.9719 0.3464 -1.4010 9 7 4.1935 -1.7302 -2.1497 10 6 5.4505 -1.4000 -2.8257 11 1 5.9901 -0.6278 -2.2774 12 6 5.1865 -0.9562 -4.2887 13 6 6.5294 -1.3157 -4.9720 14 7 6.9552 -2.5764 -4.3275 15 6 8.3401 -2.6417 -4.2280 16 6 9.1181 -2.5788 -5.3798 17 6 10.4947 -2.6444 -5.2660 18 6 11.0498 -2.7719 -3.9993 19 6 10.2180 -2.8284 -2.8993 20 6 10.8145 -2.9662 -1.5222 21 7 10.9534 -1.6400 -0.9153 22 6 11.4769 -1.5146 0.3439 23 1 11.7871 -2.3935 0.8897 24 6 11.6090 -0.2581 0.9187 25 7 11.2315 0.8129 0.2533 26 14 12.3224 -0.0872 2.6366 27 1 13.7014 -0.6377 2.6568 28 1 12.3571 1.3477 3.0177 29 1 11.4765 -0.8357 3.6007 30 7 8.9073 -2.7634 -3.0377 31 6 6.3253 -2.6597 -2.9972 32 1 -0.3633 -0.9261 0.4454 33 1 -0.3633 0.8488 0.5793 34 1 -0.3634 0.0773 -1.0247 35 1 1.6112 -1.8583 1.2685 36 1 3.1716 -0.8756 1.2682 37 1 3.8396 -2.6321 -2.1972 38 1 4.3627 -1.5208 -4.7253 39 1 4.9954 0.1155 -4.3431 40 1 7.2662 -0.5320 -4.7964 41 1 6.3824 -1.4669 -6.0414 42 1 8.6531 -2.4801 -6.3496 43 1 11.1241 -2.5976 -6.1424 44 1 12.1214 -2.8263 -3.8763 45 1 10.1620 -3.5823 -0.9036 46 1 11.7951 -3.4363 -1.5964 47 1 10.6752 -0.8506 -1.4056 48 1 11.3234 1.6910 0.6552 49 1 5.7042 -3.5535 -2.9363 50 1 7.0933 -2.6858 -2.2242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128111784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:32 Heat of formation + Delta-G solvation = 55.680622 kcal Electronic energy + Delta-G solvation = -29648.620954 eV Core-core repulsion = 25677.218807 eV Total energy + Delta-G solvation = -3971.402146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.82423 -40.05005 -38.45986 -36.89191 -35.00458 -34.30085 -32.41749 -32.06784 -30.54642 -29.24257 -29.00425 -28.24405 -25.84880 -24.41659 -23.17494 -23.04269 -21.73692 -21.15700 -20.82352 -20.67760 -20.12496 -17.70605 -17.44780 -16.97420 -16.62125 -16.06562 -15.70226 -15.20960 -15.00710 -14.75768 -14.41292 -14.27140 -13.97990 -13.81022 -13.53921 -13.36868 -13.31763 -13.02136 -13.00226 -12.71332 -12.43562 -12.29614 -12.23062 -12.17362 -11.82779 -11.66010 -11.62337 -11.26311 -11.00492 -10.88066 -10.78011 -10.61789 -10.34674 -10.13401 -9.88435 -9.85435 -9.78320 -9.37161 -9.17492 -9.00225 -8.86755 -7.96164 -6.92244 -5.73428 -3.03509 1.36962 1.53884 2.38707 2.90601 3.46564 3.50007 3.51964 3.55700 3.60007 4.06727 4.33317 4.45814 4.49016 4.51184 4.58039 4.62907 4.75779 4.90520 4.95983 5.04232 5.06306 5.17764 5.26095 5.30891 5.34114 5.36132 5.44052 5.47022 5.47831 5.59385 5.64447 5.70858 5.73491 5.75882 5.76556 5.91702 5.93160 6.05648 6.11342 6.16203 6.21462 6.40528 6.41402 6.47198 6.56378 6.72779 6.84194 7.26256 7.38631 7.70522 8.14490 8.32835 8.43234 9.54906 10.09563 10.45370 11.49000 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007091 B = 0.003252 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3947.707909 B = 8608.163184 C =11860.026720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.118 0.882 4 C -0.148 4.148 5 C -0.192 4.192 6 H 0.122 0.878 7 C 0.543 3.457 8 O -0.534 6.534 9 N -0.715 5.715 10 C 0.127 3.873 11 H 0.103 0.897 12 C -0.139 4.139 13 C 0.051 3.949 14 N -0.466 5.466 15 C 0.298 3.702 16 C -0.191 4.191 17 C -0.059 4.059 18 C -0.182 4.182 19 C 0.165 3.835 20 C 0.198 3.802 21 N -0.722 5.722 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 N -0.502 5.502 31 C 0.024 3.976 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.081 0.919 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.546 -7.925 -10.996 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.213 4.213 6 H 0.140 0.860 7 C 0.329 3.671 8 O -0.410 6.410 9 N -0.366 5.366 10 C 0.021 3.979 11 H 0.121 0.879 12 C -0.178 4.178 13 C -0.075 4.075 14 N -0.185 5.185 15 C 0.066 3.934 16 C -0.213 4.213 17 C -0.085 4.085 18 C -0.204 4.204 19 C 0.027 3.973 20 C 0.070 3.930 21 N -0.367 5.367 22 C -0.372 4.372 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.740 3.260 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 N -0.216 5.216 31 C -0.103 4.103 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.236 0.764 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.218 0.782 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.875 -7.591 -10.355 22.828 hybrid contribution 0.919 0.449 0.247 1.052 sum -17.956 -7.143 -10.108 21.808 Atomic orbital electron populations 1.21398 0.92263 1.02232 1.02103 1.22390 0.95139 0.95229 1.01427 0.86419 1.23132 1.03369 1.01409 0.90659 1.22290 0.97650 1.05385 0.95972 0.85980 1.19702 0.84688 0.84800 0.77919 1.90736 1.68182 1.21061 1.61059 1.45810 1.24066 1.13404 1.53298 1.22205 0.84707 0.98267 0.92735 0.87877 1.23137 0.97184 1.02402 0.95079 1.23088 0.96237 0.88704 0.99520 1.60825 1.03410 1.33964 1.20271 1.19856 0.89734 0.94597 0.89211 1.21385 0.94047 1.07579 0.98337 1.21401 0.94412 0.94997 0.97665 1.21925 1.01533 1.04178 0.92731 1.21503 0.87665 0.91239 0.96897 1.19630 0.96397 0.90668 0.86289 1.42201 1.76237 1.01372 1.16903 1.19165 1.33713 0.92635 0.91734 0.91029 1.24756 1.01973 0.95427 0.98625 1.69666 1.53087 0.97513 1.37626 0.86240 0.78857 0.76633 0.84266 1.21220 1.21677 1.21204 1.67258 1.13516 1.16223 1.24624 1.23188 0.98930 0.96700 0.91511 0.92375 0.91640 0.92021 0.87742 0.87985 0.76438 0.90155 0.89891 0.92012 0.89200 0.85212 0.84962 0.84720 0.94487 0.94513 0.78164 0.93422 0.90104 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.19 37.16 0.38 -0.44 16 2 C -0.12 -1.14 5.92 -90.62 -0.54 -1.68 16 3 H 0.12 1.34 7.67 -51.93 -0.40 0.94 16 4 C -0.15 -1.32 9.88 -26.73 -0.26 -1.58 16 5 C -0.19 -1.78 5.91 -91.77 -0.54 -2.32 16 6 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 7 C 0.54 6.96 7.61 -10.98 -0.08 6.87 16 8 O -0.53 -9.31 15.90 5.56 0.09 -9.22 16 9 N -0.71 -7.80 5.18 -52.04 -0.27 -8.07 16 10 C 0.13 1.65 3.31 -66.11 -0.22 1.43 16 11 H 0.10 1.75 7.55 -51.93 -0.39 1.36 16 12 C -0.14 -1.53 6.76 -24.59 -0.17 -1.70 16 13 C 0.05 0.58 6.08 -2.30 -0.01 0.57 16 14 N -0.47 -6.26 5.20 -170.00 -0.88 -7.15 16 15 C 0.30 4.68 6.15 -155.02 -0.95 3.73 16 16 C -0.19 -2.59 9.38 -39.23 -0.37 -2.96 16 17 C -0.06 -0.78 10.17 -39.32 -0.40 -1.18 16 18 C -0.18 -2.90 9.71 -39.42 -0.38 -3.28 16 19 C 0.17 3.11 6.14 -82.61 -0.51 2.60 16 20 C 0.20 4.21 6.56 -5.19 -0.03 4.18 16 21 N -0.72 -19.06 5.59 -61.08 -0.34 -19.40 16 22 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 23 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 26 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 N -0.50 -9.27 7.86 -8.67 -0.07 -9.34 16 31 C 0.02 0.33 6.52 -2.84 -0.02 0.31 16 32 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.40 3.14 8.37 -40.82 -0.34 2.80 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.81 7.78 -51.93 -0.40 0.40 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.13 1.41 7.97 -52.49 -0.42 0.99 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.04 0.74 8.04 -51.93 -0.42 0.32 16 47 H 0.38 10.95 7.66 -40.82 -0.31 10.64 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 49 H 0.08 0.92 7.72 -51.93 -0.40 0.52 16 50 H 0.12 1.97 5.91 -51.93 -0.31 1.66 16 LS Contribution 411.45 15.07 6.20 6.20 Total: -1.00 -34.80 411.45 -11.92 -46.72 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.99 Total: 13.67 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -4.36 Total: -2.94 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -0.84 Total: -72.24 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.80 -11.92 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128111784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.401 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds