Wall clock time and date at job start Wed Apr 1 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46007 * 2 1 4 4 C 1.53040 * 109.45065 * 240.03630 * 2 1 3 5 5 C 1.53623 * 109.24270 * 178.49547 * 4 2 1 6 6 N 1.46924 * 108.54448 * 54.85616 * 5 4 2 7 7 C 1.34780 * 120.63179 * 126.36329 * 6 5 4 8 8 O 1.21546 * 120.00122 * 185.54749 * 7 6 5 9 9 C 1.47834 * 119.99595 * 5.27405 * 7 6 5 10 10 C 1.39952 * 120.93935 * 220.54319 * 9 7 6 11 11 N 1.32140 * 118.92350 * 179.77155 * 10 9 7 12 12 C 1.31876 * 120.97035 * 0.51919 * 11 10 9 13 13 C 1.50694 * 118.95334 * 179.75164 * 12 11 10 14 14 C 1.52996 * 117.49967 * 8.60314 * 13 12 11 15 15 C 1.52995 * 60.00136 * 252.50881 * 14 13 12 16 16 N 1.31871 * 122.09079 * 359.73034 * 12 11 10 17 17 C 1.32146 * 120.96793 * 359.97438 * 16 12 11 18 18 C 1.46927 * 118.73827 * 306.09499 * 6 5 4 19 19 C 1.53043 * 109.46186 * 119.97344 * 2 1 3 20 20 H 1.09002 * 109.52031 * 61.40624 * 19 2 1 21 21 C 1.52999 * 109.49918 * 301.32701 * 19 2 1 22 22 N 1.46500 * 109.47097 * 175.16184 * 21 19 2 23 23 C 1.36937 * 119.99847 * 179.97438 * 22 21 19 24 24 H 1.08003 * 120.00063 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00220 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99433 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00242 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46890 * 59.99939 * 27 25 23 29 29 H 1.48492 * 109.46908 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47130 * 300.00071 * 27 25 23 31 31 H 1.09002 * 109.47066 * 300.02590 * 1 2 3 32 32 H 1.08994 * 109.47255 * 60.02265 * 1 2 3 33 33 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.49739 * 298.57167 * 4 2 1 35 35 H 1.09000 * 109.49572 * 58.63677 * 4 2 1 36 36 H 1.08998 * 109.74275 * 295.12015 * 5 4 2 37 37 H 1.08998 * 109.66508 * 174.55282 * 5 4 2 38 38 H 1.08003 * 120.53206 * 0.02562 * 10 9 7 39 39 H 1.09004 * 115.54950 * 154.30500 * 13 12 11 40 40 H 1.08994 * 117.50192 * 359.97438 * 14 13 12 41 41 H 1.09006 * 117.50104 * 145.01925 * 14 13 12 42 42 H 1.09000 * 117.50456 * 252.51570 * 15 14 13 43 43 H 1.08996 * 117.50214 * 107.48892 * 15 14 13 44 44 H 1.08000 * 120.53692 * 179.97438 * 17 16 12 45 45 H 1.09003 * 109.58318 * 173.64355 * 18 6 5 46 46 H 1.08994 * 109.58699 * 294.06751 * 18 6 5 47 47 H 1.09007 * 109.46997 * 295.15655 * 21 19 2 48 48 H 1.08996 * 109.47093 * 55.15582 * 21 19 2 49 49 H 0.97000 * 120.00228 * 359.97438 * 22 21 19 50 50 H 0.96997 * 119.99585 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 -1.2502 5 6 3.5754 -0.6850 -1.2645 6 7 4.0677 -1.2492 -0.0004 7 6 4.9617 -2.2578 -0.0005 8 8 5.2852 -2.7834 1.0466 9 6 5.5443 -2.7288 -1.2750 10 6 5.7378 -4.0937 -1.5167 11 7 6.2575 -4.4707 -2.6717 12 6 6.6009 -3.5822 -3.5837 13 6 7.1948 -4.0625 -4.8827 14 6 7.1806 -5.5685 -5.1520 15 6 8.4956 -4.8647 -4.8110 16 7 6.4406 -2.2870 -3.3952 17 6 5.9229 -1.8223 -2.2716 18 6 3.5714 -0.6890 1.2640 19 6 2.0399 -0.7209 1.2500 20 1 1.6976 -1.7557 1.2387 21 6 1.5030 -0.0191 2.4990 22 7 1.8953 -0.7754 3.6908 23 6 1.5255 -0.3351 4.9336 24 1 0.9449 0.5699 5.0352 25 6 1.8976 -1.0515 6.0629 26 7 2.6055 -2.1541 5.9390 27 14 1.3937 -0.4505 7.7583 28 1 -0.0878 -0.3920 7.8425 29 1 1.9111 -1.3859 8.7890 30 1 1.9565 0.9039 7.9909 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.6974 -1.7555 -1.2384 35 1 1.6565 -0.2209 -2.1398 36 1 3.9188 0.3447 -1.3633 37 1 3.9483 -1.2784 -2.0993 38 1 5.4630 -4.8270 -0.7730 39 1 7.0601 -3.3971 -5.7356 40 1 6.7421 -6.2120 -4.3894 41 1 7.0366 -5.8943 -6.1822 42 1 9.2167 -4.7273 -5.6168 43 1 8.9219 -5.0451 -3.8242 44 1 5.7952 -0.7600 -2.1244 45 1 3.9418 -1.2851 2.0980 46 1 3.9146 0.3404 1.3671 47 1 1.9161 0.9881 2.5557 48 1 0.4158 0.0366 2.4455 49 1 2.4170 -1.5881 3.5996 50 1 2.8652 -2.6548 6.7281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133151123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:36 Heat of formation + Delta-G solvation = 53.604541 kcal Electronic energy + Delta-G solvation = -30116.418177 eV Core-core repulsion = 26144.926005 eV Total energy + Delta-G solvation = -3971.492172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72015 -40.09020 -38.06779 -37.32829 -35.16394 -34.17238 -33.73340 -32.42730 -31.74386 -29.82215 -28.34213 -26.38485 -25.62511 -24.73424 -23.57193 -23.19454 -22.72813 -21.75531 -21.26504 -20.32715 -19.43016 -18.27894 -17.39814 -17.28726 -16.95890 -16.18732 -15.69185 -15.23459 -14.88630 -14.87507 -14.61272 -14.39913 -14.26384 -14.06886 -13.84448 -13.56248 -13.21453 -13.06412 -12.78458 -12.63551 -12.55125 -11.98983 -11.97855 -11.83780 -11.71867 -11.59778 -11.27805 -11.17549 -11.02086 -10.89310 -10.87972 -10.81740 -10.63354 -10.33184 -10.21186 -10.04531 -9.86565 -9.63262 -9.61298 -9.51255 -8.84601 -8.61816 -6.87898 -5.70928 -3.00727 0.17327 0.68207 2.54211 2.82299 3.17328 3.31965 3.46633 3.50702 3.52402 3.57276 3.82306 4.10730 4.23017 4.45630 4.51971 4.56985 4.60618 4.63070 4.63953 4.75915 4.84259 4.99998 5.07628 5.17608 5.25491 5.26925 5.34507 5.44858 5.57391 5.59803 5.63409 5.65793 5.68016 5.75181 5.82208 5.85740 5.90102 5.93103 5.98938 6.12659 6.19321 6.29040 6.41023 6.48515 6.50901 6.57326 6.78894 6.86992 7.31000 7.65969 7.72798 8.05407 8.46850 9.57729 10.15559 10.49570 11.51276 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.002388 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.286308 B =11722.585687 C =12985.629309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.098 3.902 6 N -0.602 5.602 7 C 0.563 3.437 8 O -0.514 6.514 9 C -0.237 4.237 10 C 0.206 3.794 11 N -0.517 5.517 12 C 0.361 3.639 13 C -0.107 4.107 14 C -0.152 4.152 15 C -0.154 4.154 16 N -0.516 5.516 17 C 0.183 3.817 18 C 0.120 3.880 19 C -0.102 4.102 20 H 0.075 0.925 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.180 0.820 39 H 0.131 0.869 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.176 0.824 45 H 0.107 0.893 46 H 0.070 0.930 47 H 0.019 0.981 48 H 0.028 0.972 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 -0.400 -26.540 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.025 4.025 6 N -0.335 5.335 7 C 0.349 3.651 8 O -0.389 6.389 9 C -0.245 4.245 10 C 0.040 3.960 11 N -0.230 5.230 12 C 0.096 3.904 13 C -0.127 4.127 14 C -0.190 4.190 15 C -0.192 4.192 16 N -0.229 5.229 17 C 0.016 3.984 18 C -0.001 4.001 19 C -0.121 4.121 20 H 0.093 0.907 21 C 0.031 3.969 22 N -0.378 5.378 23 C -0.374 4.374 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.197 0.803 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.193 0.807 45 H 0.125 0.875 46 H 0.088 0.912 47 H 0.036 0.964 48 H 0.045 0.955 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.558 -0.908 -26.676 27.485 hybrid contribution -0.559 0.527 1.806 1.963 sum 5.999 -0.381 -24.870 25.586 Atomic orbital electron populations 1.21878 0.94853 1.02011 1.01777 1.21098 0.96094 0.99365 0.93785 0.90943 1.22053 0.94099 1.01760 0.98670 1.22133 0.95427 0.99072 0.85884 1.48083 1.42417 1.34860 1.08171 1.17830 0.79615 0.79983 0.87688 1.90897 1.60473 1.55372 1.32175 1.21827 1.07178 0.97354 0.98092 1.23443 0.86762 0.93397 0.92423 1.68223 1.13302 1.39178 1.02292 1.22360 0.89494 0.84856 0.93716 1.20689 1.02874 0.95952 0.93232 1.23055 1.00179 0.92419 1.03316 1.23007 0.90387 1.02027 1.03783 1.68196 1.15369 1.16463 1.22894 1.23589 0.87577 1.00740 0.86462 1.21824 0.93961 0.99181 0.85103 1.21720 0.94283 1.00885 0.95234 0.90675 1.20721 0.96875 0.94035 0.85294 1.42408 1.65328 1.29251 1.00770 1.19144 1.28027 1.06415 0.83769 0.91308 1.24758 1.00806 0.97526 0.97814 1.69661 1.42189 1.17273 1.28653 0.86286 0.77967 0.77654 0.84364 1.21338 1.21716 1.21303 0.91533 0.93200 0.92767 0.91427 0.90727 0.90712 0.90248 0.80286 0.85081 0.87011 0.87996 0.87734 0.88418 0.80660 0.87519 0.91198 0.96369 0.95481 0.78117 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.81 37.16 0.33 -1.34 16 2 C -0.08 -0.98 2.22 -90.58 -0.20 -1.18 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.22 5.38 -26.39 -0.14 -1.36 16 5 C 0.10 0.91 4.99 -3.49 -0.02 0.89 16 6 N -0.60 -7.92 2.97 -173.62 -0.51 -8.44 16 7 C 0.56 8.33 7.36 -12.33 -0.09 8.24 16 8 O -0.51 -9.96 16.38 5.32 0.09 -9.87 16 9 C -0.24 -2.83 5.13 -104.69 -0.54 -3.37 16 10 C 0.21 2.42 10.97 -16.78 -0.18 2.24 16 11 N -0.52 -5.89 9.32 -10.39 -0.10 -5.99 16 12 C 0.36 3.88 7.31 -157.06 -1.15 2.73 16 13 C -0.11 -0.86 6.23 -91.78 -0.57 -1.43 16 14 C -0.15 -1.01 10.00 -26.74 -0.27 -1.28 16 15 C -0.15 -1.03 10.23 -26.73 -0.27 -1.31 16 16 N -0.52 -5.60 10.31 -10.39 -0.11 -5.71 16 17 C 0.18 1.87 8.69 -16.78 -0.15 1.72 16 18 C 0.12 1.91 5.52 -3.71 -0.02 1.89 16 19 C -0.10 -1.58 1.92 -90.50 -0.17 -1.75 16 20 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 21 C 0.16 3.08 5.41 -4.04 -0.02 3.06 16 22 N -0.73 -18.56 5.38 -59.91 -0.32 -18.88 16 23 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 27 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.66 4.73 -51.93 -0.25 0.42 16 38 H 0.18 1.95 8.06 -52.48 -0.42 1.52 16 39 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.11 0.88 7.53 -51.93 -0.39 0.49 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.18 1.37 6.71 -52.49 -0.35 1.01 16 45 H 0.11 2.15 6.20 -51.93 -0.32 1.83 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 48 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 49 H 0.38 10.47 6.89 -40.82 -0.28 10.19 16 50 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -33.97 398.51 -10.66 -44.64 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -7.70 Total: 8.32 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.71 Total: 0.31 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -0.32 Total: -67.11 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.97 -10.66 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133151123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.241 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds