Wall clock time and date at job start Wed Apr 1 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46007 * 2 1 4 4 C 1.53040 * 109.45065 * 240.03630 * 2 1 3 5 5 C 1.53623 * 109.24270 * 178.49547 * 4 2 1 6 6 N 1.46924 * 108.54448 * 54.85616 * 5 4 2 7 7 C 1.34780 * 120.63179 * 126.36329 * 6 5 4 8 8 O 1.21546 * 120.00122 * 185.54749 * 7 6 5 9 9 C 1.47834 * 119.99595 * 5.27405 * 7 6 5 10 10 C 1.39952 * 120.93935 * 220.54319 * 9 7 6 11 11 N 1.32140 * 118.92350 * 179.77155 * 10 9 7 12 12 C 1.31876 * 120.97035 * 0.51919 * 11 10 9 13 13 C 1.50694 * 118.95334 * 179.75164 * 12 11 10 14 14 C 1.52996 * 117.49967 * 8.60314 * 13 12 11 15 15 C 1.52995 * 60.00136 * 252.50881 * 14 13 12 16 16 N 1.31871 * 122.09079 * 359.73034 * 12 11 10 17 17 C 1.32146 * 120.96793 * 359.97438 * 16 12 11 18 18 C 1.46927 * 118.73827 * 306.09499 * 6 5 4 19 19 C 1.53043 * 109.46186 * 119.97344 * 2 1 3 20 20 H 1.09002 * 109.52031 * 61.40624 * 19 2 1 21 21 C 1.52999 * 109.49918 * 301.32701 * 19 2 1 22 22 N 1.46500 * 109.47097 * 175.16184 * 21 19 2 23 23 C 1.36937 * 119.99847 * 179.97438 * 22 21 19 24 24 H 1.08003 * 120.00063 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00220 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99433 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00242 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46890 * 59.99939 * 27 25 23 29 29 H 1.48492 * 109.46908 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47130 * 300.00071 * 27 25 23 31 31 H 1.09002 * 109.47066 * 300.02590 * 1 2 3 32 32 H 1.08994 * 109.47255 * 60.02265 * 1 2 3 33 33 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.49739 * 298.57167 * 4 2 1 35 35 H 1.09000 * 109.49572 * 58.63677 * 4 2 1 36 36 H 1.08998 * 109.74275 * 295.12015 * 5 4 2 37 37 H 1.08998 * 109.66508 * 174.55282 * 5 4 2 38 38 H 1.08003 * 120.53206 * 0.02562 * 10 9 7 39 39 H 1.09004 * 115.54950 * 154.30500 * 13 12 11 40 40 H 1.08994 * 117.50192 * 359.97438 * 14 13 12 41 41 H 1.09006 * 117.50104 * 145.01925 * 14 13 12 42 42 H 1.09000 * 117.50456 * 252.51570 * 15 14 13 43 43 H 1.08996 * 117.50214 * 107.48892 * 15 14 13 44 44 H 1.08000 * 120.53692 * 179.97438 * 17 16 12 45 45 H 1.09003 * 109.58318 * 173.64355 * 18 6 5 46 46 H 1.08994 * 109.58699 * 294.06751 * 18 6 5 47 47 H 1.09007 * 109.46997 * 295.15655 * 21 19 2 48 48 H 1.08996 * 109.47093 * 55.15582 * 21 19 2 49 49 H 0.97000 * 120.00228 * 359.97438 * 22 21 19 50 50 H 0.96997 * 119.99585 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 -1.2502 5 6 3.5754 -0.6850 -1.2645 6 7 4.0677 -1.2492 -0.0004 7 6 4.9617 -2.2578 -0.0005 8 8 5.2852 -2.7834 1.0466 9 6 5.5443 -2.7288 -1.2750 10 6 5.7378 -4.0937 -1.5167 11 7 6.2575 -4.4707 -2.6717 12 6 6.6009 -3.5822 -3.5837 13 6 7.1948 -4.0625 -4.8827 14 6 7.1806 -5.5685 -5.1520 15 6 8.4956 -4.8647 -4.8110 16 7 6.4406 -2.2870 -3.3952 17 6 5.9229 -1.8223 -2.2716 18 6 3.5714 -0.6890 1.2640 19 6 2.0399 -0.7209 1.2500 20 1 1.6976 -1.7557 1.2387 21 6 1.5030 -0.0191 2.4990 22 7 1.8953 -0.7754 3.6908 23 6 1.5255 -0.3351 4.9336 24 1 0.9449 0.5699 5.0352 25 6 1.8976 -1.0515 6.0629 26 7 2.6055 -2.1541 5.9390 27 14 1.3937 -0.4505 7.7583 28 1 -0.0878 -0.3920 7.8425 29 1 1.9111 -1.3859 8.7890 30 1 1.9565 0.9039 7.9909 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.6974 -1.7555 -1.2384 35 1 1.6565 -0.2209 -2.1398 36 1 3.9188 0.3447 -1.3633 37 1 3.9483 -1.2784 -2.0993 38 1 5.4630 -4.8270 -0.7730 39 1 7.0601 -3.3971 -5.7356 40 1 6.7421 -6.2120 -4.3894 41 1 7.0366 -5.8943 -6.1822 42 1 9.2167 -4.7273 -5.6168 43 1 8.9219 -5.0451 -3.8242 44 1 5.7952 -0.7600 -2.1244 45 1 3.9418 -1.2851 2.0980 46 1 3.9146 0.3404 1.3671 47 1 1.9161 0.9881 2.5557 48 1 0.4158 0.0366 2.4455 49 1 2.4170 -1.5881 3.5996 50 1 2.8652 -2.6548 6.7281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133151123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:35 Heat of formation + Delta-G solvation = 32.093226 kcal Electronic energy + Delta-G solvation = -30117.350977 eV Core-core repulsion = 26144.926005 eV Total energy + Delta-G solvation = -3972.424973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.61726 -41.16576 -39.24383 -37.98266 -36.69792 -35.34903 -34.87009 -33.60329 -33.14787 -31.39495 -29.37947 -27.66750 -26.73708 -25.80874 -24.90985 -24.49628 -23.23906 -22.63710 -22.44794 -21.49491 -20.52639 -19.25395 -19.04587 -18.22443 -18.12220 -17.33042 -16.75680 -16.49182 -16.19808 -15.78404 -15.61334 -15.55352 -15.42392 -15.18533 -15.11238 -14.80627 -14.42416 -14.33134 -14.10978 -14.04968 -13.36685 -13.14040 -13.04701 -12.80376 -12.75281 -12.67420 -12.60583 -12.36825 -12.22643 -12.13853 -12.04074 -11.91373 -11.88210 -11.76703 -11.44261 -11.35828 -11.21141 -11.01652 -10.89531 -10.49648 -10.41025 -9.75029 -8.98996 -7.94038 -5.24007 -0.71353 -0.18180 1.43917 1.44983 1.49017 1.55241 1.75634 2.36319 2.55606 2.59406 2.79984 3.12252 3.20732 3.31477 3.38792 3.63584 3.74772 3.77348 3.81805 3.86914 3.90766 3.98803 4.07051 4.20255 4.22478 4.33352 4.36462 4.49598 4.56012 4.57426 4.72600 4.76614 4.79320 4.80489 4.89758 4.92218 4.96414 5.05011 5.07619 5.12018 5.16862 5.23572 5.26174 5.31344 5.38609 5.48117 5.48661 5.57372 5.65574 6.21969 6.26651 6.81033 6.91712 7.32137 8.09570 8.30923 9.29245 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.002388 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.286308 B =11722.585687 C =12985.629309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.091 0.909 4 C -0.122 4.122 5 C 0.093 3.907 6 N -0.596 5.596 7 C 0.562 3.438 8 O -0.575 6.575 9 C -0.246 4.246 10 C 0.200 3.800 11 N -0.526 5.526 12 C 0.356 3.644 13 C -0.121 4.121 14 C -0.145 4.145 15 C -0.147 4.147 16 N -0.520 5.520 17 C 0.198 3.802 18 C 0.128 3.872 19 C -0.089 4.089 20 H 0.048 0.952 21 C 0.157 3.843 22 N -0.748 5.748 23 C -0.244 4.244 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.976 3.024 28 H -0.276 1.276 29 H -0.298 1.298 30 H -0.275 1.275 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.176 0.824 39 H 0.148 0.852 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.205 0.795 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.027 0.973 48 H 0.033 0.967 49 H 0.370 0.630 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 1.867 -29.917 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.109 0.891 4 C -0.160 4.160 5 C -0.028 4.028 6 N -0.327 5.327 7 C 0.350 3.650 8 O -0.455 6.455 9 C -0.254 4.254 10 C 0.033 3.967 11 N -0.239 5.239 12 C 0.091 3.909 13 C -0.141 4.141 14 C -0.183 4.183 15 C -0.186 4.186 16 N -0.233 5.233 17 C 0.031 3.969 18 C 0.005 3.995 19 C -0.108 4.108 20 H 0.066 0.934 21 C 0.030 3.970 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.097 0.903 25 C -0.273 4.273 26 N -0.623 5.623 27 Si 0.804 3.196 28 H -0.202 1.202 29 H -0.225 1.225 30 H -0.201 1.201 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.193 0.807 39 H 0.166 0.834 40 H 0.114 0.886 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.100 0.900 44 H 0.222 0.778 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.201 0.799 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.125 1.416 -30.128 30.777 hybrid contribution -0.450 -0.165 2.750 2.792 sum 5.675 1.251 -27.378 27.988 Atomic orbital electron populations 1.21858 0.94421 1.01555 1.02493 1.21089 0.96379 0.99885 0.92261 0.89064 1.22046 0.93979 1.01125 0.98834 1.22512 0.95441 1.00881 0.83996 1.48119 1.41568 1.34226 1.08755 1.18248 0.79322 0.79570 0.87886 1.90868 1.62667 1.57416 1.34506 1.21533 1.08746 0.97727 0.97370 1.23492 0.86781 0.93649 0.92750 1.68302 1.13843 1.39515 1.02280 1.23000 0.88538 0.84959 0.94366 1.20915 1.03784 0.97017 0.92402 1.23107 0.99797 0.91205 1.04192 1.23081 0.90508 1.01127 1.03847 1.68332 1.15679 1.16392 1.22873 1.23979 0.85958 1.01582 0.85426 1.21503 0.94117 0.98767 0.85078 1.21568 0.93899 0.99522 0.95850 0.93370 1.20926 0.97178 0.93996 0.84867 1.42676 1.65124 1.29271 1.01987 1.19626 1.26735 1.06194 0.84985 0.90257 1.25652 1.01678 0.98024 1.01924 1.69859 1.44316 1.18974 1.29167 0.85176 0.77957 0.77160 0.79265 1.20159 1.22491 1.20134 0.93050 0.90202 0.93857 0.92838 0.86960 0.87382 0.88753 0.80655 0.83408 0.88622 0.85580 0.85313 0.89976 0.77832 0.92736 0.89915 0.95497 0.94943 0.79850 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.81 71.98 0.63 -2.31 16 2 C -0.08 -1.59 2.22 -10.77 -0.02 -1.62 16 3 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.91 5.38 30.82 0.17 -1.74 16 5 C 0.09 1.43 4.99 86.51 0.43 1.86 16 6 N -0.60 -15.50 2.97 -821.50 -2.44 -17.94 16 7 C 0.56 17.29 7.36 86.78 0.64 17.93 16 8 O -0.57 -24.22 16.38 -3.86 -0.06 -24.28 16 9 C -0.25 -5.86 5.13 -19.91 -0.10 -5.97 16 10 C 0.20 4.85 10.97 85.06 0.93 5.79 16 11 N -0.53 -11.94 9.32 -186.80 -1.74 -13.68 16 12 C 0.36 7.18 7.31 138.70 1.01 8.20 16 13 C -0.12 -1.70 6.23 -11.54 -0.07 -1.77 16 14 C -0.15 -1.67 10.00 30.59 0.31 -1.36 16 15 C -0.15 -1.70 10.23 30.59 0.31 -1.39 16 16 N -0.52 -10.16 10.31 -186.80 -1.93 -12.08 16 17 C 0.20 3.62 8.69 85.06 0.74 4.36 16 18 C 0.13 4.18 5.52 86.36 0.48 4.66 16 19 C -0.09 -2.79 1.92 -10.71 -0.02 -2.81 16 20 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 21 C 0.16 6.14 5.41 86.38 0.47 6.61 16 22 N -0.75 -39.34 5.38 -343.44 -1.85 -41.19 16 23 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 24 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 25 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 26 N -0.97 -62.92 13.06 21.65 0.28 -62.64 16 27 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 30 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 31 H 0.05 1.19 6.30 -2.39 -0.02 1.17 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.24 4.73 -2.39 -0.01 1.23 16 38 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.15 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.10 1.44 7.53 -2.39 -0.02 1.42 16 41 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.21 2.44 6.71 -2.91 -0.02 2.42 16 45 H 0.05 2.39 6.20 -2.39 -0.01 2.38 16 46 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.03 1.26 6.15 -2.39 -0.01 1.25 16 49 H 0.37 21.47 6.89 -92.71 -0.64 20.83 16 50 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -78.90 398.51 1.82 -77.08 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.32 Total: 32.15 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 7.21 Total: 12.96 kcal Atomic # 7 Polarization: -139.86 SS G_CDS: -7.67 Total: -147.53 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -78.90 1.82 -77.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133151123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.171 kcal (2) G-P(sol) polarization free energy of solvation -78.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds