Wall clock time and date at job start Wed Apr 1 2020 02:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.44801 * 2 1 4 4 C 1.53042 * 109.46197 * 240.03383 * 2 1 3 5 5 C 1.53185 * 109.33853 * 178.62688 * 4 2 1 6 6 N 1.46929 * 108.77729 * 54.62353 * 5 4 2 7 7 C 1.34770 * 120.63408 * 126.40905 * 6 5 4 8 8 O 1.21553 * 120.00207 * 175.96835 * 7 6 5 9 9 C 1.47837 * 119.99898 * 355.96901 * 7 6 5 10 10 C 1.39969 * 120.93757 * 54.01862 * 9 7 6 11 11 N 1.32143 * 118.91896 * 179.71854 * 10 9 7 12 12 C 1.31884 * 120.96307 * 0.56771 * 11 10 9 13 13 N 1.31852 * 122.09721 * 359.70340 * 12 11 10 14 14 C 1.32156 * 120.97091 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.53978 * 180.02562 * 14 13 12 16 16 C 1.53004 * 117.49849 * 13.44044 * 15 14 13 17 17 C 1.53004 * 117.50135 * 304.78379 * 15 14 13 18 18 C 1.46928 * 118.73422 * 306.38869 * 6 5 4 19 19 C 1.53043 * 109.48602 * 119.94715 * 2 1 3 20 20 H 1.08995 * 109.47066 * 61.40604 * 19 2 1 21 21 C 1.53001 * 109.52551 * 301.34024 * 19 2 1 22 22 N 1.46490 * 109.46950 * 175.11666 * 21 19 2 23 23 C 1.36939 * 120.00127 * 180.02562 * 22 21 19 24 24 H 1.08009 * 119.99556 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00472 * 179.97438 * 23 22 21 26 26 N 1.31622 * 120.00111 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00263 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46911 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47084 * 120.00397 * 27 25 23 30 30 H 1.48500 * 109.47089 * 240.00449 * 27 25 23 31 31 H 1.08998 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46975 * 299.96132 * 1 2 3 33 33 H 1.08999 * 109.47017 * 59.96957 * 1 2 3 34 34 H 1.09000 * 109.49473 * 58.66216 * 4 2 1 35 35 H 1.09000 * 109.49535 * 298.60022 * 4 2 1 36 36 H 1.08998 * 109.58605 * 174.40877 * 5 4 2 37 37 H 1.09001 * 109.59451 * 294.69096 * 5 4 2 38 38 H 1.07999 * 120.53709 * 359.97438 * 10 9 7 39 39 H 1.08002 * 118.94524 * 179.68483 * 12 11 10 40 40 H 1.09002 * 115.55151 * 159.10776 * 15 14 13 41 41 H 1.09006 * 117.49591 * 0.02562 * 16 15 14 42 42 H 1.09000 * 117.50168 * 145.01483 * 16 15 14 43 43 H 1.08994 * 117.49937 * 214.97782 * 17 15 14 44 44 H 1.08999 * 117.49478 * 359.97339 * 17 15 14 45 45 H 1.08999 * 109.58808 * 173.39619 * 18 6 5 46 46 H 1.09005 * 109.58707 * 293.81574 * 18 6 5 47 47 H 1.09008 * 109.46775 * 295.11513 * 21 19 2 48 48 H 1.09001 * 109.46901 * 55.11096 * 21 19 2 49 49 H 0.97002 * 120.00591 * 359.97438 * 22 21 19 50 50 H 0.97001 * 120.00425 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6892 -1.2646 6 7 4.0680 -1.2494 -0.0004 7 6 4.9618 -2.2582 -0.0005 8 8 5.4204 -2.6639 1.0496 9 6 5.3844 -2.8712 -1.2776 10 6 5.8918 -2.0862 -2.3195 11 7 6.2629 -2.6765 -3.4420 12 6 6.1503 -3.9820 -3.5915 13 7 5.6727 -4.7577 -2.6382 14 6 5.2836 -4.2520 -1.4809 15 6 4.7398 -5.1477 -0.3979 16 6 4.9463 -6.6552 -0.5580 17 6 3.5550 -6.0479 -0.7543 18 6 3.5721 -0.6887 1.2638 19 6 2.0406 -0.7202 1.2501 20 1 1.6981 -1.7549 1.2386 21 6 1.5041 -0.0186 2.4995 22 7 1.8964 -0.7753 3.6909 23 6 1.5260 -0.3359 4.9338 24 1 0.9449 0.5688 5.0357 25 6 1.8972 -1.0532 6.0627 26 7 2.6057 -2.1555 5.9386 27 14 1.3925 -0.4533 7.7583 28 1 0.6085 0.8009 7.6265 29 1 0.5619 -1.4895 8.4230 30 1 2.6065 -0.1943 8.5734 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5132 0.8903 33 1 -0.3633 0.5143 -0.8897 34 1 1.6573 -0.2207 -2.1398 35 1 1.6974 -1.7555 -1.2386 36 1 3.9412 -1.2854 -2.0988 37 1 3.9148 0.3399 -1.3706 38 1 5.9824 -1.0160 -2.2062 39 1 6.4588 -4.4298 -4.5246 40 1 4.7756 -4.7393 0.6121 41 1 5.4759 -6.9991 -1.4466 42 1 5.1177 -7.2387 0.3466 43 1 2.8116 -6.2319 0.0212 44 1 3.1687 -5.9919 -1.7720 45 1 3.9423 -1.2846 2.0981 46 1 3.9156 0.3407 1.3667 47 1 1.9173 0.9885 2.5563 48 1 0.4168 0.0373 2.4461 49 1 2.4179 -1.5881 3.5994 50 1 2.8648 -2.6569 6.7275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133280301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:58 Heat of formation + Delta-G solvation = 50.230354 kcal Electronic energy + Delta-G solvation = -31073.954052 eV Core-core repulsion = 27102.315564 eV Total energy + Delta-G solvation = -3971.638488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71033 -39.98764 -38.04961 -37.37451 -35.10941 -33.89274 -33.56891 -32.54122 -31.80090 -29.84181 -28.32521 -26.18425 -25.69004 -25.01215 -23.33154 -23.18418 -22.48711 -21.46914 -21.28428 -20.31016 -19.37854 -18.25814 -17.47108 -17.14289 -16.96892 -16.22779 -15.57329 -15.20823 -14.89207 -14.84930 -14.45980 -14.44288 -14.25046 -14.01137 -13.86217 -13.57844 -13.19835 -13.09708 -12.76014 -12.55331 -12.22738 -11.98518 -11.95532 -11.77963 -11.74652 -11.57850 -11.49912 -11.03437 -10.94006 -10.84336 -10.71314 -10.63149 -10.47510 -10.28299 -10.21882 -9.98459 -9.81448 -9.62923 -9.60444 -9.49247 -8.86354 -8.61474 -6.88834 -5.72507 -3.02071 0.29194 0.65094 2.51033 2.87167 3.26223 3.45257 3.50440 3.53074 3.61227 3.75767 3.83370 3.97355 4.20545 4.54907 4.60714 4.63219 4.76275 4.78254 4.79769 4.85572 4.89651 5.04481 5.08002 5.18974 5.27687 5.47078 5.53330 5.57554 5.59292 5.63295 5.65835 5.71231 5.75266 5.85994 5.89463 5.94877 5.98516 5.99296 6.06961 6.12328 6.18923 6.28388 6.40534 6.49626 6.52440 6.59367 6.77968 6.86041 7.31845 7.68535 7.72844 8.06447 8.45244 9.56494 10.14072 10.48067 11.49814 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003202 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.133803 B = 8743.477555 C = 9978.850902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.100 3.900 6 N -0.600 5.600 7 C 0.567 3.433 8 O -0.513 6.513 9 C -0.223 4.223 10 C 0.179 3.821 11 N -0.526 5.526 12 C 0.309 3.691 13 N -0.520 5.520 14 C 0.259 3.741 15 C -0.140 4.140 16 C -0.149 4.149 17 C -0.151 4.151 18 C 0.121 3.879 19 C -0.101 4.101 20 H 0.074 0.926 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.174 0.826 39 H 0.201 0.799 40 H 0.143 0.857 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.019 0.981 48 H 0.028 0.972 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -1.540 -23.132 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.023 4.023 6 N -0.332 5.332 7 C 0.352 3.648 8 O -0.389 6.389 9 C -0.231 4.231 10 C 0.013 3.987 11 N -0.240 5.240 12 C 0.022 3.978 13 N -0.233 5.233 14 C 0.113 3.887 15 C -0.159 4.159 16 C -0.186 4.186 17 C -0.189 4.189 18 C -0.001 4.001 19 C -0.121 4.121 20 H 0.093 0.907 21 C 0.031 3.969 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.191 0.809 39 H 0.217 0.783 40 H 0.160 0.840 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.037 0.963 48 H 0.045 0.955 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.307 -2.060 -23.294 23.618 hybrid contribution -0.287 0.554 1.578 1.697 sum 3.020 -1.505 -21.716 21.977 Atomic orbital electron populations 1.21877 0.94846 1.01994 1.01776 1.21095 0.96084 0.99380 0.93768 0.90947 1.21971 0.94230 1.01716 0.98671 1.21934 0.95338 0.99167 0.85867 1.48103 1.42347 1.34639 1.08160 1.17801 0.79594 0.79624 0.87747 1.90869 1.54422 1.61629 1.31955 1.21564 1.07330 0.96252 0.97904 1.23456 0.88081 1.00675 0.86497 1.68452 1.18245 1.13077 1.24188 1.25133 0.89413 0.85923 0.97294 1.68206 1.13117 1.40659 1.01356 1.20834 0.87163 0.89629 0.91066 1.21348 1.04733 0.92023 0.97821 1.22978 0.99116 0.92436 1.04076 1.22990 0.91344 1.01495 1.03061 1.21820 0.93814 0.99343 0.85079 1.21721 0.94261 1.00857 0.95255 0.90721 1.20719 0.96871 0.94054 0.85265 1.42414 1.65308 1.29232 1.00806 1.19234 1.27835 1.06390 0.83746 0.91208 1.24745 1.00813 0.97526 0.97789 1.69678 1.42317 1.17338 1.28407 0.86152 0.77637 0.77720 0.84878 1.20609 1.21916 1.21885 0.92776 0.91538 0.93202 0.90764 0.91493 0.90493 0.90723 0.80935 0.78303 0.83973 0.87466 0.87985 0.87625 0.88572 0.87568 0.91211 0.96343 0.95466 0.78163 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.82 37.16 0.33 -1.32 16 2 C -0.08 -0.97 2.23 -90.57 -0.20 -1.17 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.22 5.36 -26.61 -0.14 -1.37 16 5 C 0.10 0.96 5.58 -3.71 -0.02 0.94 16 6 N -0.60 -7.96 2.97 -173.88 -0.52 -8.47 16 7 C 0.57 8.51 6.65 -12.34 -0.08 8.43 16 8 O -0.51 -9.87 14.81 5.32 0.08 -9.79 16 9 C -0.22 -2.80 4.90 -104.69 -0.51 -3.31 16 10 C 0.18 1.84 8.75 -16.77 -0.15 1.70 16 11 N -0.53 -5.35 10.42 -14.24 -0.15 -5.50 16 12 C 0.31 2.92 12.27 -92.03 -1.13 1.79 16 13 N -0.52 -5.87 9.54 -10.48 -0.10 -5.97 16 14 C 0.26 3.29 6.50 -81.82 -0.53 2.76 16 15 C -0.14 -1.81 5.61 -91.77 -0.51 -2.32 16 16 C -0.15 -1.58 10.04 -26.69 -0.27 -1.85 16 17 C -0.15 -1.62 10.24 -26.69 -0.27 -1.89 16 18 C 0.12 1.91 5.51 -3.71 -0.02 1.89 16 19 C -0.10 -1.56 1.92 -90.50 -0.17 -1.73 16 20 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 21 C 0.16 3.05 5.41 -4.05 -0.02 3.03 16 22 N -0.73 -18.36 5.38 -59.91 -0.32 -18.68 16 23 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 27 Si 0.90 22.57 29.55 -169.99 -5.02 17.55 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.67 4.74 -51.93 -0.25 0.42 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.17 1.36 7.43 -52.49 -0.39 0.97 16 39 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.14 2.20 6.16 -51.93 -0.32 1.88 16 41 H 0.11 1.10 7.66 -51.93 -0.40 0.70 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.11 2.13 6.23 -51.93 -0.32 1.80 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 48 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 49 H 0.38 10.31 6.89 -40.82 -0.28 10.03 16 50 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -33.36 395.76 -10.95 -44.30 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.65 Total: 10.13 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -3.96 Total: -1.77 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.36 Total: -66.39 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.36 -10.95 -44.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133280301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.535 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds