Wall clock time and date at job start Wed Apr 1 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.44801 * 2 1 4 4 C 1.53042 * 109.46197 * 240.03383 * 2 1 3 5 5 C 1.53185 * 109.33853 * 178.62688 * 4 2 1 6 6 N 1.46929 * 108.77729 * 54.62353 * 5 4 2 7 7 C 1.34770 * 120.63408 * 126.40905 * 6 5 4 8 8 O 1.21553 * 120.00207 * 175.96835 * 7 6 5 9 9 C 1.47837 * 119.99898 * 355.96901 * 7 6 5 10 10 C 1.39969 * 120.93757 * 54.01862 * 9 7 6 11 11 N 1.32143 * 118.91896 * 179.71854 * 10 9 7 12 12 C 1.31884 * 120.96307 * 0.56771 * 11 10 9 13 13 N 1.31852 * 122.09721 * 359.70340 * 12 11 10 14 14 C 1.32156 * 120.97091 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.53978 * 180.02562 * 14 13 12 16 16 C 1.53004 * 117.49849 * 13.44044 * 15 14 13 17 17 C 1.53004 * 117.50135 * 304.78379 * 15 14 13 18 18 C 1.46928 * 118.73422 * 306.38869 * 6 5 4 19 19 C 1.53043 * 109.48602 * 119.94715 * 2 1 3 20 20 H 1.08995 * 109.47066 * 61.40604 * 19 2 1 21 21 C 1.53001 * 109.52551 * 301.34024 * 19 2 1 22 22 N 1.46490 * 109.46950 * 175.11666 * 21 19 2 23 23 C 1.36939 * 120.00127 * 180.02562 * 22 21 19 24 24 H 1.08009 * 119.99556 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00472 * 179.97438 * 23 22 21 26 26 N 1.31622 * 120.00111 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00263 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46911 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47084 * 120.00397 * 27 25 23 30 30 H 1.48500 * 109.47089 * 240.00449 * 27 25 23 31 31 H 1.08998 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46975 * 299.96132 * 1 2 3 33 33 H 1.08999 * 109.47017 * 59.96957 * 1 2 3 34 34 H 1.09000 * 109.49473 * 58.66216 * 4 2 1 35 35 H 1.09000 * 109.49535 * 298.60022 * 4 2 1 36 36 H 1.08998 * 109.58605 * 174.40877 * 5 4 2 37 37 H 1.09001 * 109.59451 * 294.69096 * 5 4 2 38 38 H 1.07999 * 120.53709 * 359.97438 * 10 9 7 39 39 H 1.08002 * 118.94524 * 179.68483 * 12 11 10 40 40 H 1.09002 * 115.55151 * 159.10776 * 15 14 13 41 41 H 1.09006 * 117.49591 * 0.02562 * 16 15 14 42 42 H 1.09000 * 117.50168 * 145.01483 * 16 15 14 43 43 H 1.08994 * 117.49937 * 214.97782 * 17 15 14 44 44 H 1.08999 * 117.49478 * 359.97339 * 17 15 14 45 45 H 1.08999 * 109.58808 * 173.39619 * 18 6 5 46 46 H 1.09005 * 109.58707 * 293.81574 * 18 6 5 47 47 H 1.09008 * 109.46775 * 295.11513 * 21 19 2 48 48 H 1.09001 * 109.46901 * 55.11096 * 21 19 2 49 49 H 0.97002 * 120.00591 * 359.97438 * 22 21 19 50 50 H 0.97001 * 120.00425 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6892 -1.2646 6 7 4.0680 -1.2494 -0.0004 7 6 4.9618 -2.2582 -0.0005 8 8 5.4204 -2.6639 1.0496 9 6 5.3844 -2.8712 -1.2776 10 6 5.8918 -2.0862 -2.3195 11 7 6.2629 -2.6765 -3.4420 12 6 6.1503 -3.9820 -3.5915 13 7 5.6727 -4.7577 -2.6382 14 6 5.2836 -4.2520 -1.4809 15 6 4.7398 -5.1477 -0.3979 16 6 4.9463 -6.6552 -0.5580 17 6 3.5550 -6.0479 -0.7543 18 6 3.5721 -0.6887 1.2638 19 6 2.0406 -0.7202 1.2501 20 1 1.6981 -1.7549 1.2386 21 6 1.5041 -0.0186 2.4995 22 7 1.8964 -0.7753 3.6909 23 6 1.5260 -0.3359 4.9338 24 1 0.9449 0.5688 5.0357 25 6 1.8972 -1.0532 6.0627 26 7 2.6057 -2.1555 5.9386 27 14 1.3925 -0.4533 7.7583 28 1 0.6085 0.8009 7.6265 29 1 0.5619 -1.4895 8.4230 30 1 2.6065 -0.1943 8.5734 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5132 0.8903 33 1 -0.3633 0.5143 -0.8897 34 1 1.6573 -0.2207 -2.1398 35 1 1.6974 -1.7555 -1.2386 36 1 3.9412 -1.2854 -2.0988 37 1 3.9148 0.3399 -1.3706 38 1 5.9824 -1.0160 -2.2062 39 1 6.4588 -4.4298 -4.5246 40 1 4.7756 -4.7393 0.6121 41 1 5.4759 -6.9991 -1.4466 42 1 5.1177 -7.2387 0.3466 43 1 2.8116 -6.2319 0.0212 44 1 3.1687 -5.9919 -1.7720 45 1 3.9423 -1.2846 2.0981 46 1 3.9156 0.3407 1.3667 47 1 1.9173 0.9885 2.5563 48 1 0.4168 0.0373 2.4461 49 1 2.4179 -1.5881 3.5994 50 1 2.8648 -2.6569 6.7275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133280301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:57 Heat of formation + Delta-G solvation = 29.890488 kcal Electronic energy + Delta-G solvation = -31074.836055 eV Core-core repulsion = 27102.315564 eV Total energy + Delta-G solvation = -3972.520491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.61144 -41.06191 -39.22894 -38.30007 -36.67103 -35.25144 -34.46510 -33.62964 -33.28111 -31.42648 -29.36398 -27.60776 -26.56392 -26.19608 -24.95065 -24.24182 -23.36601 -22.63188 -22.36381 -21.49236 -20.46787 -19.22911 -19.04768 -18.36610 -17.99142 -17.38244 -16.75230 -16.46005 -16.24940 -15.84842 -15.64150 -15.54513 -15.42560 -15.18726 -15.10381 -14.73622 -14.42343 -14.33549 -14.12820 -14.02008 -13.17615 -13.13768 -13.06280 -12.90305 -12.82333 -12.67470 -12.64925 -12.59299 -12.38190 -12.15922 -12.02458 -11.91258 -11.81637 -11.59884 -11.42356 -11.29327 -11.19808 -10.98945 -10.88647 -10.45608 -10.43939 -9.74863 -8.98796 -7.94262 -5.24014 -0.56565 -0.20153 1.38519 1.45402 1.46915 1.56914 1.80750 2.41397 2.55363 2.75438 2.92641 3.04364 3.12837 3.26080 3.39116 3.63925 3.70122 3.75022 3.82970 3.88060 3.94351 3.99286 4.02851 4.18989 4.21366 4.30755 4.37006 4.49986 4.57414 4.61994 4.66076 4.72178 4.76576 4.80532 4.84191 4.90656 4.95979 5.01709 5.05246 5.11591 5.16306 5.20138 5.23102 5.25944 5.38812 5.48417 5.49270 5.57005 5.71604 6.23382 6.26677 6.87276 6.93743 7.32352 8.09305 8.30763 9.29275 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003202 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.133803 B = 8743.477555 C = 9978.850902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.089 0.911 4 C -0.121 4.121 5 C 0.095 3.905 6 N -0.594 5.594 7 C 0.565 3.435 8 O -0.571 6.571 9 C -0.241 4.241 10 C 0.194 3.806 11 N -0.527 5.527 12 C 0.315 3.685 13 N -0.527 5.527 14 C 0.251 3.749 15 C -0.165 4.165 16 C -0.136 4.136 17 C -0.140 4.140 18 C 0.128 3.872 19 C -0.087 4.087 20 H 0.049 0.951 21 C 0.157 3.843 22 N -0.748 5.748 23 C -0.242 4.242 24 H 0.079 0.921 25 C -0.079 4.079 26 N -0.971 5.971 27 Si 0.973 3.027 28 H -0.262 1.262 29 H -0.294 1.294 30 H -0.295 1.295 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.200 0.800 39 H 0.239 0.761 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.026 0.974 48 H 0.034 0.966 49 H 0.370 0.630 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 0.149 -26.631 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.108 0.892 4 C -0.159 4.159 5 C -0.026 4.026 6 N -0.325 5.325 7 C 0.352 3.648 8 O -0.451 6.451 9 C -0.249 4.249 10 C 0.027 3.973 11 N -0.240 5.240 12 C 0.029 3.971 13 N -0.241 5.241 14 C 0.106 3.894 15 C -0.184 4.184 16 C -0.173 4.173 17 C -0.177 4.177 18 C 0.006 3.994 19 C -0.107 4.107 20 H 0.068 0.932 21 C 0.031 3.969 22 N -0.390 5.390 23 C -0.374 4.374 24 H 0.097 0.903 25 C -0.271 4.271 26 N -0.622 5.622 27 Si 0.803 3.197 28 H -0.186 1.186 29 H -0.221 1.221 30 H -0.223 1.223 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.216 0.784 39 H 0.255 0.745 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.044 0.956 48 H 0.051 0.949 49 H 0.202 0.798 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.631 -0.319 -26.865 26.996 hybrid contribution -0.095 0.049 2.572 2.575 sum 2.536 -0.270 -24.293 24.426 Atomic orbital electron populations 1.21853 0.94304 1.01617 1.02483 1.21085 0.96450 0.99812 0.92275 0.89245 1.21956 0.93999 1.01114 0.98837 1.22292 0.95450 1.00796 0.84068 1.48132 1.41589 1.34077 1.08685 1.18230 0.79168 0.79348 0.88024 1.90838 1.56667 1.63296 1.34268 1.21359 1.09605 0.96491 0.97412 1.23821 0.86325 1.01611 0.85551 1.68596 1.18301 1.13408 1.23737 1.25965 0.87480 0.85772 0.97843 1.68267 1.13771 1.40915 1.01101 1.20800 0.87404 0.89657 0.91561 1.21197 1.07159 0.93390 0.96682 1.23039 0.98920 0.90728 1.04587 1.23022 0.91105 1.00076 1.03523 1.21488 0.94091 0.98753 0.85091 1.21555 0.93728 0.99575 0.95830 0.93239 1.20918 0.97192 0.93952 0.84862 1.42677 1.65101 1.29258 1.01988 1.19688 1.26564 1.06130 0.84971 0.90294 1.25613 1.01670 0.98020 1.01782 1.69866 1.44360 1.18989 1.28974 0.85069 0.77046 0.77702 0.79927 1.18618 1.22126 1.22285 0.93741 0.93040 0.90231 0.87048 0.92824 0.88994 0.87723 0.78378 0.74494 0.87624 0.86522 0.87551 0.87742 0.87425 0.92745 0.90261 0.95623 0.94861 0.79831 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.82 71.98 0.63 -2.28 16 2 C -0.08 -1.61 2.23 -10.76 -0.02 -1.63 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.93 5.36 30.67 0.16 -1.77 16 5 C 0.10 1.55 5.58 86.36 0.48 2.03 16 6 N -0.59 -15.86 2.97 -822.33 -2.44 -18.31 16 7 C 0.57 17.84 6.65 86.78 0.58 18.41 16 8 O -0.57 -24.21 14.81 -3.88 -0.06 -24.26 16 9 C -0.24 -6.01 4.90 -19.91 -0.10 -6.10 16 10 C 0.19 3.53 8.75 85.07 0.74 4.28 16 11 N -0.53 -9.08 10.42 -198.97 -2.07 -11.15 16 12 C 0.32 5.01 12.27 180.84 2.22 7.23 16 13 N -0.53 -11.03 9.54 -187.07 -1.78 -12.81 16 14 C 0.25 6.39 6.50 42.92 0.28 6.67 16 15 C -0.17 -4.52 5.61 -11.54 -0.06 -4.59 16 16 C -0.14 -2.93 10.04 30.62 0.31 -2.62 16 17 C -0.14 -3.05 10.24 30.62 0.31 -2.74 16 18 C 0.13 4.26 5.51 86.36 0.48 4.73 16 19 C -0.09 -2.74 1.92 -10.71 -0.02 -2.76 16 20 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 21 C 0.16 6.14 5.41 86.38 0.47 6.61 16 22 N -0.75 -39.09 5.38 -343.46 -1.85 -40.93 16 23 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 24 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 25 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 26 N -0.97 -62.32 13.06 21.65 0.28 -62.04 16 27 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 28 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 29 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 30 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.18 6.30 -2.39 -0.02 1.17 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.28 4.74 -2.39 -0.01 1.27 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.20 2.45 7.43 -2.91 -0.02 2.43 16 39 H 0.24 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.11 3.70 6.16 -2.39 -0.01 3.69 16 41 H 0.12 2.29 7.66 -2.38 -0.02 2.27 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 2.40 6.23 -2.39 -0.01 2.39 16 46 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 47 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.03 1.29 6.15 -2.39 -0.01 1.27 16 49 H 0.37 21.29 6.89 -92.71 -0.64 20.65 16 50 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -78.05 395.76 2.19 -75.86 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.32 Total: 35.89 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 7.76 Total: 8.31 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -7.87 Total: -145.24 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -78.05 2.19 -75.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133280301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.749 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds