Wall clock time and date at job start Wed Apr 1 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46572 * 2 1 4 4 C 1.52997 * 109.46730 * 240.00375 * 2 1 3 5 5 C 1.53003 * 109.46773 * 174.99579 * 4 2 1 6 6 H 1.09005 * 109.47374 * 55.00211 * 5 4 2 7 7 C 1.52999 * 109.47047 * 174.99767 * 5 4 2 8 8 N 1.46501 * 109.47241 * 294.99624 * 5 4 2 9 9 C 1.34774 * 119.99708 * 154.99854 * 8 5 4 10 10 O 1.21283 * 120.00541 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99836 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47277 * 180.02562 * 11 9 8 13 13 N 1.30248 * 126.10509 * 90.02330 * 12 11 9 14 14 N 1.39871 * 110.08383 * 179.97438 * 13 12 11 15 15 C 1.46503 * 125.46007 * 179.97438 * 14 13 12 16 16 C 1.37041 * 109.07669 * 0.02562 * 14 13 12 17 17 C 1.39285 * 133.84755 * 180.02562 * 16 14 13 18 18 C 1.36594 * 119.85306 * 179.97438 * 17 16 14 19 19 C 1.38961 * 120.81271 * 359.97438 * 18 17 16 20 20 C 1.36472 * 120.63123 * 0.02562 * 19 18 17 21 21 C 1.39945 * 119.63411 * 359.97438 * 20 19 18 22 22 N 1.46491 * 109.47437 * 119.99947 * 2 1 3 23 23 C 1.36935 * 119.99949 * 275.00294 * 22 2 1 24 24 H 1.07998 * 120.00160 * 359.97438 * 23 22 2 25 25 C 1.38817 * 119.99685 * 179.97438 * 23 22 2 26 26 N 1.31618 * 120.00563 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99684 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47383 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.47037 * 120.00377 * 27 25 23 30 30 H 1.48498 * 109.47344 * 239.99883 * 27 25 23 31 31 H 1.08999 * 109.47170 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47000 * 299.99403 * 1 2 3 34 34 H 1.08998 * 109.47758 * 54.99877 * 4 2 1 35 35 H 1.09000 * 109.47176 * 294.99243 * 4 2 1 36 36 H 1.09000 * 109.47349 * 60.00059 * 7 5 4 37 37 H 1.08997 * 109.47255 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47085 * 299.99957 * 7 5 4 39 39 H 0.96997 * 120.00107 * 335.00027 * 8 5 4 40 40 H 1.09003 * 109.47499 * 60.00212 * 11 9 8 41 41 H 1.09005 * 109.47153 * 300.00187 * 11 9 8 42 42 H 1.08993 * 109.47421 * 270.02829 * 15 14 13 43 43 H 1.08993 * 109.47133 * 30.03451 * 15 14 13 44 44 H 1.09000 * 109.46736 * 150.02965 * 15 14 13 45 45 H 1.08007 * 120.07549 * 359.71632 * 17 16 14 46 46 H 1.08000 * 119.59067 * 179.97438 * 18 17 16 47 47 H 1.07999 * 119.68981 * 180.02562 * 19 18 17 48 48 H 1.07995 * 120.18603 * 179.97438 * 20 19 18 49 49 H 0.97003 * 119.99989 * 95.00300 * 22 2 1 50 50 H 0.96993 * 120.00524 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 1 3.9955 -0.9921 -0.3869 7 6 4.0851 -1.4381 -2.4926 8 7 3.9479 0.7896 -1.4926 9 6 5.1611 1.2137 -1.0869 10 8 5.9359 0.4342 -0.5742 11 6 5.5549 2.6567 -1.2703 12 6 6.9489 2.8685 -0.7383 13 7 8.0552 2.7482 -1.4150 14 7 9.1534 3.0214 -0.5929 15 6 10.5573 2.9843 -1.0099 16 6 8.7055 3.3282 0.6654 17 6 9.3381 3.6745 1.8569 18 6 8.5932 3.9290 2.9733 19 6 7.2065 3.8475 2.9374 20 6 6.5593 3.5105 1.7841 21 6 7.3003 3.2452 0.6270 22 7 2.0184 -0.6905 1.1961 23 6 2.1492 -0.0074 2.3756 24 1 1.8927 1.0405 2.4241 25 6 2.6115 -0.6620 3.5092 26 7 2.9237 -1.9392 3.4503 27 14 2.7905 0.2701 5.1181 28 1 2.3765 1.6825 4.9207 29 1 1.9295 -0.3578 6.1524 30 1 4.2074 0.2263 5.5605 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.6054 -0.2617 -2.1370 35 1 1.7517 -1.7715 -1.2056 36 1 3.6545 -1.0592 -3.4195 37 1 5.1714 -1.3608 -2.5389 38 1 3.8001 -2.4818 -2.3596 39 1 3.3284 1.4130 -1.9029 40 1 4.8578 3.2955 -0.7279 41 1 5.5289 2.9086 -2.3305 42 1 10.9567 1.9825 -0.8525 43 1 10.6295 3.2425 -2.0663 44 1 11.1302 3.7005 -0.4209 45 1 10.4155 3.7377 1.8993 46 1 9.0882 4.1967 3.8951 47 1 6.6353 4.0529 3.8307 48 1 5.4813 3.4490 1.7645 49 1 2.2492 -1.6317 1.1525 50 1 3.2470 -2.3965 4.2423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134380723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:14 Heat of formation + Delta-G solvation = 55.394648 kcal Electronic energy + Delta-G solvation = -30627.208393 eV Core-core repulsion = 26655.793846 eV Total energy + Delta-G solvation = -3971.414547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.26722 -39.41324 -37.17427 -36.77062 -34.43676 -34.01278 -32.14780 -31.13449 -30.36552 -29.82227 -29.35568 -28.53441 -26.27926 -25.64638 -23.57615 -22.93562 -21.97967 -21.53356 -20.38728 -19.66558 -19.45544 -17.29492 -17.02985 -16.88835 -16.76348 -15.75459 -15.40719 -15.16657 -14.97310 -14.65902 -14.05853 -13.99232 -13.90794 -13.68737 -13.60136 -13.24943 -13.02729 -12.91059 -12.70152 -12.65566 -12.23521 -12.04531 -11.86935 -11.76931 -11.68868 -11.60675 -11.54258 -10.99289 -10.98210 -10.79881 -10.63057 -10.56651 -10.36728 -10.16194 -9.94800 -9.83694 -9.57542 -9.41615 -8.83334 -8.62656 -8.58215 -7.78187 -6.86745 -5.68089 -2.95795 1.01625 1.59647 2.33734 2.46437 3.03504 3.48391 3.52233 3.56129 3.56829 3.91422 4.30165 4.51651 4.63212 4.66439 4.91810 5.05009 5.06322 5.07365 5.20292 5.24521 5.29749 5.36155 5.45407 5.47350 5.52674 5.54336 5.64925 5.68011 5.75444 5.88918 5.94781 6.00353 6.05381 6.06382 6.18453 6.33845 6.38126 6.41974 6.48587 6.54171 6.61994 6.63687 6.78289 6.87128 6.88756 6.99430 7.08627 7.11533 7.67703 7.76866 7.87189 8.50102 8.63997 9.61522 10.19493 10.53352 11.54849 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.004069 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.617122 B = 6880.466002 C = 9158.786053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.145 3.855 6 H 0.105 0.895 7 C -0.161 4.161 8 N -0.717 5.717 9 C 0.519 3.481 10 O -0.521 6.521 11 C -0.063 4.063 12 C 0.126 3.874 13 N -0.246 5.246 14 N -0.412 5.412 15 C 0.114 3.886 16 C 0.128 3.872 17 C -0.148 4.148 18 C -0.069 4.069 19 C -0.161 4.161 20 C -0.030 4.030 21 C -0.162 4.162 22 N -0.721 5.721 23 C -0.233 4.233 24 H 0.067 0.933 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.900 3.100 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.394 0.606 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.130 0.870 49 H 0.382 0.618 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.767 12.846 -11.732 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.041 3.959 6 H 0.123 0.877 7 C -0.219 4.219 8 N -0.368 5.368 9 C 0.302 3.698 10 O -0.396 6.396 11 C -0.105 4.105 12 C -0.052 4.052 13 N -0.058 5.058 14 N -0.200 5.200 15 C -0.027 4.027 16 C 0.014 3.986 17 C -0.170 4.170 18 C -0.090 4.090 19 C -0.181 4.181 20 C -0.050 4.050 21 C -0.170 4.170 22 N -0.362 5.362 23 C -0.364 4.364 24 H 0.085 0.915 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.731 3.269 28 H -0.206 1.206 29 H -0.221 1.221 30 H -0.219 1.219 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.228 0.772 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.139 0.861 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.216 0.784 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.087 12.111 -12.428 20.072 hybrid contribution -0.353 0.472 1.557 1.665 sum 9.735 12.583 -10.871 19.268 Atomic orbital electron populations 1.22465 0.99630 1.00767 0.99718 1.20214 0.91469 0.95548 0.86551 0.93588 1.22166 0.93784 1.02166 0.98802 1.21007 0.94974 0.80142 0.99782 0.87722 1.22180 1.01499 1.00150 0.98075 1.45899 1.16283 1.11668 1.62987 1.20088 0.82166 0.89193 0.78329 1.90771 1.50825 1.56214 1.41781 1.20056 0.90625 0.96185 1.03640 1.22596 0.93658 0.98149 0.90803 1.76459 0.92836 1.17979 1.18575 1.47969 1.05368 1.61113 1.05528 1.21675 0.76246 1.02718 1.02101 1.18783 0.93531 0.98993 0.87343 1.19727 0.99424 1.07366 0.90453 1.20698 0.94038 0.97011 0.97211 1.20687 0.94458 1.04628 0.98294 1.20446 1.00014 0.94015 0.90524 1.19674 0.92397 1.10314 0.94602 1.42407 1.77938 1.10576 1.05296 1.19181 1.36287 0.93643 0.87289 0.91456 1.24681 1.02244 0.95893 0.97892 1.69649 1.51017 1.08629 1.28618 0.86226 0.77356 0.78817 0.84486 1.20614 1.22070 1.21872 0.94741 0.93595 0.92936 0.92068 0.90733 0.93171 0.92617 0.91856 0.77249 0.86600 0.87191 0.91424 0.89659 0.90024 0.86113 0.85536 0.85522 0.85248 0.78378 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 3 H 0.05 0.86 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16 5 C 0.14 2.35 2.52 -67.93 -0.17 2.18 16 6 H 0.10 2.27 7.06 -51.93 -0.37 1.90 16 7 C -0.16 -2.28 9.48 37.16 0.35 -1.92 16 8 N -0.72 -10.19 4.45 -53.80 -0.24 -10.43 16 9 C 0.52 8.58 7.79 -10.99 -0.09 8.50 16 10 O -0.52 -11.48 15.70 5.56 0.09 -11.40 16 11 C -0.06 -0.80 6.29 -29.04 -0.18 -0.99 16 12 C 0.13 2.00 5.92 -80.19 -0.48 1.53 16 13 N -0.25 -3.99 12.40 34.84 0.43 -3.56 16 14 N -0.41 -5.99 4.05 -65.47 -0.27 -6.25 16 15 C 0.11 1.08 11.40 59.85 0.68 1.76 16 16 C 0.13 1.94 6.87 -84.17 -0.58 1.36 16 17 C -0.15 -1.87 9.97 -39.79 -0.40 -2.26 16 18 C -0.07 -0.84 9.96 -39.91 -0.40 -1.24 16 19 C -0.16 -2.21 9.97 -39.95 -0.40 -2.60 16 20 C -0.03 -0.45 10.07 -39.58 -0.40 -0.85 16 21 C -0.16 -2.65 6.33 -105.21 -0.67 -3.32 16 22 N -0.72 -17.53 4.49 -53.43 -0.24 -17.77 16 23 C -0.23 -6.38 9.93 -15.06 -0.15 -6.53 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 27 Si 0.90 22.76 29.55 -169.99 -5.02 17.73 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 30 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.39 4.18 8.60 -40.82 -0.35 3.83 16 40 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 49 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 418.86 15.07 6.31 6.31 Total: -1.00 -37.15 418.86 -9.29 -46.44 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -8.16 Total: 13.15 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.92 Total: -6.38 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: 0.41 Total: -65.86 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -37.15 -9.29 -46.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.834 kcal (2) G-P(sol) polarization free energy of solvation -37.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds