Wall clock time and date at job start Wed Apr 1 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46572 * 2 1 4 4 C 1.52997 * 109.46730 * 240.00375 * 2 1 3 5 5 C 1.53003 * 109.46773 * 174.99579 * 4 2 1 6 6 H 1.09005 * 109.47374 * 55.00211 * 5 4 2 7 7 C 1.52999 * 109.47047 * 174.99767 * 5 4 2 8 8 N 1.46501 * 109.47241 * 294.99624 * 5 4 2 9 9 C 1.34774 * 119.99708 * 154.99854 * 8 5 4 10 10 O 1.21283 * 120.00541 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99836 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47277 * 180.02562 * 11 9 8 13 13 N 1.30248 * 126.10509 * 90.02330 * 12 11 9 14 14 N 1.39871 * 110.08383 * 179.97438 * 13 12 11 15 15 C 1.46503 * 125.46007 * 179.97438 * 14 13 12 16 16 C 1.37041 * 109.07669 * 0.02562 * 14 13 12 17 17 C 1.39285 * 133.84755 * 180.02562 * 16 14 13 18 18 C 1.36594 * 119.85306 * 179.97438 * 17 16 14 19 19 C 1.38961 * 120.81271 * 359.97438 * 18 17 16 20 20 C 1.36472 * 120.63123 * 0.02562 * 19 18 17 21 21 C 1.39945 * 119.63411 * 359.97438 * 20 19 18 22 22 N 1.46491 * 109.47437 * 119.99947 * 2 1 3 23 23 C 1.36935 * 119.99949 * 275.00294 * 22 2 1 24 24 H 1.07998 * 120.00160 * 359.97438 * 23 22 2 25 25 C 1.38817 * 119.99685 * 179.97438 * 23 22 2 26 26 N 1.31618 * 120.00563 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99684 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47383 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.47037 * 120.00377 * 27 25 23 30 30 H 1.48498 * 109.47344 * 239.99883 * 27 25 23 31 31 H 1.08999 * 109.47170 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47000 * 299.99403 * 1 2 3 34 34 H 1.08998 * 109.47758 * 54.99877 * 4 2 1 35 35 H 1.09000 * 109.47176 * 294.99243 * 4 2 1 36 36 H 1.09000 * 109.47349 * 60.00059 * 7 5 4 37 37 H 1.08997 * 109.47255 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47085 * 299.99957 * 7 5 4 39 39 H 0.96997 * 120.00107 * 335.00027 * 8 5 4 40 40 H 1.09003 * 109.47499 * 60.00212 * 11 9 8 41 41 H 1.09005 * 109.47153 * 300.00187 * 11 9 8 42 42 H 1.08993 * 109.47421 * 270.02829 * 15 14 13 43 43 H 1.08993 * 109.47133 * 30.03451 * 15 14 13 44 44 H 1.09000 * 109.46736 * 150.02965 * 15 14 13 45 45 H 1.08007 * 120.07549 * 359.71632 * 17 16 14 46 46 H 1.08000 * 119.59067 * 179.97438 * 18 17 16 47 47 H 1.07999 * 119.68981 * 180.02562 * 19 18 17 48 48 H 1.07995 * 120.18603 * 179.97438 * 20 19 18 49 49 H 0.97003 * 119.99989 * 95.00300 * 22 2 1 50 50 H 0.96993 * 120.00524 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 1 3.9955 -0.9921 -0.3869 7 6 4.0851 -1.4381 -2.4926 8 7 3.9479 0.7896 -1.4926 9 6 5.1611 1.2137 -1.0869 10 8 5.9359 0.4342 -0.5742 11 6 5.5549 2.6567 -1.2703 12 6 6.9489 2.8685 -0.7383 13 7 8.0552 2.7482 -1.4150 14 7 9.1534 3.0214 -0.5929 15 6 10.5573 2.9843 -1.0099 16 6 8.7055 3.3282 0.6654 17 6 9.3381 3.6745 1.8569 18 6 8.5932 3.9290 2.9733 19 6 7.2065 3.8475 2.9374 20 6 6.5593 3.5105 1.7841 21 6 7.3003 3.2452 0.6270 22 7 2.0184 -0.6905 1.1961 23 6 2.1492 -0.0074 2.3756 24 1 1.8927 1.0405 2.4241 25 6 2.6115 -0.6620 3.5092 26 7 2.9237 -1.9392 3.4503 27 14 2.7905 0.2701 5.1181 28 1 2.3765 1.6825 4.9207 29 1 1.9295 -0.3578 6.1524 30 1 4.2074 0.2263 5.5605 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.6054 -0.2617 -2.1370 35 1 1.7517 -1.7715 -1.2056 36 1 3.6545 -1.0592 -3.4195 37 1 5.1714 -1.3608 -2.5389 38 1 3.8001 -2.4818 -2.3596 39 1 3.3284 1.4130 -1.9029 40 1 4.8578 3.2955 -0.7279 41 1 5.5289 2.9086 -2.3305 42 1 10.9567 1.9825 -0.8525 43 1 10.6295 3.2425 -2.0663 44 1 11.1302 3.7005 -0.4209 45 1 10.4155 3.7377 1.8993 46 1 9.0882 4.1967 3.8951 47 1 6.6353 4.0529 3.8307 48 1 5.4813 3.4490 1.7645 49 1 2.2492 -1.6317 1.1525 50 1 3.2470 -2.3965 4.2423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134380723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:13 Heat of formation + Delta-G solvation = 30.106445 kcal Electronic energy + Delta-G solvation = -30628.304972 eV Core-core repulsion = 26655.793846 eV Total energy + Delta-G solvation = -3972.511126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.32092 -40.73039 -38.35089 -38.10367 -36.02490 -35.09581 -33.97984 -32.46877 -31.35899 -30.87347 -30.58511 -30.21680 -27.56709 -26.60279 -25.62502 -23.99287 -23.12260 -22.67968 -21.73954 -21.13024 -20.57951 -19.24503 -18.13491 -18.04216 -17.90451 -17.08830 -16.59391 -16.41711 -16.18642 -16.09063 -15.63475 -15.44789 -15.01553 -14.98591 -14.86958 -14.52868 -14.31532 -14.13248 -13.84992 -13.61889 -13.51197 -13.37105 -13.22568 -13.00895 -12.91868 -12.77916 -12.75246 -12.63630 -12.62419 -12.19769 -12.10847 -12.00661 -11.79004 -11.71318 -11.51697 -11.37479 -11.08079 -10.89105 -10.70981 -9.93193 -9.65319 -8.90837 -8.81742 -7.88269 -5.13257 -0.04048 0.53215 1.30702 1.44479 1.45306 1.46609 1.55015 1.76447 2.41102 2.59730 2.84697 3.30803 3.47298 3.49488 3.67971 3.83718 3.95843 4.05978 4.09713 4.16565 4.22025 4.30619 4.37016 4.43134 4.44228 4.44955 4.56599 4.58490 4.62682 4.63656 4.72814 4.82671 4.86180 4.90718 4.99143 5.05740 5.07863 5.14381 5.25856 5.36047 5.39205 5.47188 5.49954 5.56798 5.59399 5.67731 5.72330 5.88019 6.11902 6.34716 6.58458 6.71061 7.40476 7.44220 8.21397 8.40366 9.36089 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.004069 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.617122 B = 6880.466002 C = 9158.786053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.164 3.836 3 H 0.049 0.951 4 C -0.117 4.117 5 C 0.148 3.852 6 H 0.042 0.958 7 C -0.151 4.151 8 N -0.701 5.701 9 C 0.514 3.486 10 O -0.586 6.586 11 C -0.055 4.055 12 C 0.109 3.891 13 N -0.270 5.270 14 N -0.416 5.416 15 C 0.104 3.896 16 C 0.107 3.893 17 C -0.147 4.147 18 C -0.069 4.069 19 C -0.169 4.169 20 C -0.056 4.056 21 C -0.195 4.195 22 N -0.733 5.733 23 C -0.219 4.219 24 H 0.074 0.926 25 C -0.080 4.080 26 N -0.972 5.972 27 Si 0.957 3.043 28 H -0.260 1.260 29 H -0.296 1.296 30 H -0.302 1.302 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.030 0.970 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.416 0.584 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.141 0.859 48 H 0.125 0.875 49 H 0.368 0.632 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.388 15.233 -13.165 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.067 0.933 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.060 0.940 7 C -0.209 4.209 8 N -0.353 5.353 9 C 0.300 3.700 10 O -0.465 6.465 11 C -0.096 4.096 12 C -0.069 4.069 13 N -0.083 5.083 14 N -0.205 5.205 15 C -0.036 4.036 16 C -0.008 4.008 17 C -0.168 4.168 18 C -0.089 4.089 19 C -0.189 4.189 20 C -0.077 4.077 21 C -0.203 4.203 22 N -0.373 5.373 23 C -0.351 4.351 24 H 0.092 0.908 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.788 3.212 28 H -0.184 1.184 29 H -0.223 1.223 30 H -0.231 1.231 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.254 0.746 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.129 0.871 45 H 0.171 0.829 46 H 0.180 0.820 47 H 0.159 0.841 48 H 0.143 0.857 49 H 0.199 0.801 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.644 14.573 -13.935 22.351 hybrid contribution -0.215 -0.236 1.933 1.959 sum 9.429 14.337 -12.002 20.940 Atomic orbital electron populations 1.22313 0.97791 1.00712 1.00803 1.20535 0.92543 0.95489 0.85835 0.93299 1.22071 0.92571 1.02102 0.98778 1.20771 0.95625 0.81301 0.97961 0.93954 1.22075 1.00048 1.00219 0.98551 1.45746 1.16062 1.11402 1.62135 1.20770 0.81935 0.90305 0.77020 1.90745 1.52806 1.58212 1.44771 1.20160 0.89780 0.93592 1.06106 1.23023 0.94686 0.98222 0.90961 1.76350 0.93591 1.18638 1.19739 1.48356 1.06399 1.60475 1.05281 1.22042 0.74246 1.03821 1.03497 1.19218 0.93599 0.99540 0.88408 1.20166 1.01172 1.06029 0.89461 1.21127 0.93458 0.95840 0.98493 1.21020 0.95675 1.04003 0.98171 1.20593 1.00114 0.95661 0.91305 1.20034 0.93556 1.11493 0.95200 1.42649 1.78130 1.10075 1.06434 1.19567 1.33449 0.93867 0.88255 0.90784 1.25426 1.03747 0.96767 1.01228 1.69813 1.53450 1.10273 1.28849 0.85282 0.76380 0.78775 0.80793 1.18361 1.22337 1.23050 0.90365 0.94240 0.95092 0.87247 0.90996 0.89659 0.94953 0.91544 0.74650 0.84110 0.83683 0.91214 0.88455 0.87108 0.82868 0.82017 0.84128 0.85656 0.80083 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 9.49 71.98 0.68 -4.28 16 2 C 0.16 5.82 2.84 44.99 0.13 5.94 16 3 H 0.05 1.72 7.56 -2.39 -0.02 1.70 16 4 C -0.12 -3.25 4.29 30.59 0.13 -3.12 16 5 C 0.15 4.77 2.52 44.99 0.11 4.88 16 6 H 0.04 1.93 7.06 -2.38 -0.02 1.92 16 7 C -0.15 -4.13 9.48 71.98 0.68 -3.45 16 8 N -0.70 -19.09 4.45 -442.53 -1.97 -21.06 16 9 C 0.51 17.17 7.79 87.66 0.68 17.85 16 10 O -0.59 -27.24 15.70 -3.04 -0.05 -27.29 16 11 C -0.06 -1.36 6.29 29.10 0.18 -1.18 16 12 C 0.11 3.50 5.92 44.78 0.27 3.76 16 13 N -0.27 -8.84 12.40 -43.70 -0.54 -9.38 16 14 N -0.42 -12.01 4.05 -361.05 -1.46 -13.48 16 15 C 0.10 1.84 11.40 127.77 1.46 3.29 16 16 C 0.11 3.23 6.87 39.21 0.27 3.49 16 17 C -0.15 -3.46 9.97 22.14 0.22 -3.24 16 18 C -0.07 -1.55 9.96 22.06 0.22 -1.33 16 19 C -0.17 -4.55 9.97 22.03 0.22 -4.33 16 20 C -0.06 -1.77 10.07 22.27 0.22 -1.55 16 21 C -0.20 -6.52 6.33 -20.24 -0.13 -6.64 16 22 N -0.73 -36.22 4.49 -322.95 -1.45 -37.67 16 23 C -0.22 -12.17 9.93 84.03 0.83 -11.34 16 24 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 25 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 26 N -0.97 -62.12 13.06 21.65 0.28 -61.84 16 27 Si 0.96 47.80 29.55 68.60 2.03 49.82 16 28 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 29 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 30 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.42 7.53 8.60 -92.71 -0.80 6.73 16 40 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.15 2.48 8.14 -2.38 -0.02 2.46 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 46 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 48 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 49 H 0.37 20.17 7.80 -92.71 -0.72 19.44 16 50 H 0.24 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -87.47 418.86 2.92 -84.55 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.57 Total: 41.84 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 6.65 Total: -5.51 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -5.14 Total: -143.43 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.82 kcal Total: -87.47 2.92 -84.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.660 kcal (2) G-P(sol) polarization free energy of solvation -87.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds