Wall clock time and date at job start Wed Apr 1 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46991 * 2 1 4 4 C 1.53004 * 109.46952 * 119.99979 * 2 1 3 5 5 C 1.52995 * 109.47143 * 185.00527 * 4 2 1 6 6 H 1.09003 * 109.46791 * 304.99881 * 5 4 2 7 7 C 1.52996 * 109.47262 * 185.00062 * 5 4 2 8 8 N 1.46501 * 109.47291 * 64.99596 * 5 4 2 9 9 C 1.34774 * 119.99708 * 204.99981 * 8 5 4 10 10 O 1.21283 * 120.00541 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99836 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47277 * 180.02562 * 11 9 8 13 13 N 1.30248 * 126.10509 * 90.02330 * 12 11 9 14 14 N 1.39871 * 110.08383 * 179.97438 * 13 12 11 15 15 C 1.46503 * 125.46007 * 179.97438 * 14 13 12 16 16 C 1.37041 * 109.07669 * 0.02562 * 14 13 12 17 17 C 1.39285 * 133.84755 * 180.02562 * 16 14 13 18 18 C 1.36594 * 119.85306 * 179.97438 * 17 16 14 19 19 C 1.38961 * 120.81271 * 359.97438 * 18 17 16 20 20 C 1.36472 * 120.63123 * 0.02562 * 19 18 17 21 21 C 1.39945 * 119.63411 * 359.97438 * 20 19 18 22 22 N 1.46499 * 109.47208 * 239.99844 * 2 1 3 23 23 C 1.36934 * 120.00011 * 85.00163 * 22 2 1 24 24 H 1.08005 * 119.99813 * 0.02562 * 23 22 2 25 25 C 1.38804 * 120.00196 * 179.97438 * 23 22 2 26 26 N 1.31622 * 120.00293 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00367 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46716 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47244 * 120.00137 * 27 25 23 30 30 H 1.48499 * 109.47084 * 240.00658 * 27 25 23 31 31 H 1.09005 * 109.46735 * 60.00276 * 1 2 3 32 32 H 1.08998 * 109.46991 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47328 * 300.00002 * 1 2 3 34 34 H 1.09003 * 109.47019 * 64.99730 * 4 2 1 35 35 H 1.09009 * 109.46674 * 305.00372 * 4 2 1 36 36 H 1.09003 * 109.47070 * 299.99649 * 7 5 4 37 37 H 1.09004 * 109.47256 * 59.99645 * 7 5 4 38 38 H 1.08995 * 109.47739 * 179.97438 * 7 5 4 39 39 H 0.96997 * 120.00107 * 25.00154 * 8 5 4 40 40 H 1.09003 * 109.47499 * 60.00212 * 11 9 8 41 41 H 1.09005 * 109.47153 * 300.00187 * 11 9 8 42 42 H 1.08993 * 109.47421 * 270.02829 * 15 14 13 43 43 H 1.08993 * 109.47133 * 30.03451 * 15 14 13 44 44 H 1.09000 * 109.46736 * 150.02965 * 15 14 13 45 45 H 1.08007 * 120.07549 * 359.71632 * 17 16 14 46 46 H 1.08000 * 119.59067 * 179.97438 * 18 17 16 47 47 H 1.07999 * 119.68981 * 180.02562 * 19 18 17 48 48 H 1.07995 * 120.18603 * 179.97438 * 20 19 18 49 49 H 0.96994 * 119.99934 * 264.99648 * 22 2 1 50 50 H 0.96995 * 120.00449 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3870 7 6 4.0851 -1.4382 2.4926 8 7 3.9479 0.7895 1.4926 9 6 5.1611 1.2136 1.0869 10 8 5.9356 0.4342 0.5735 11 6 5.5554 2.6563 1.2712 12 6 6.9489 2.8684 0.7380 13 7 7.2611 3.2064 -0.4805 14 7 8.6500 3.3118 -0.6087 15 6 9.3653 3.6721 -1.8354 16 6 9.2343 3.0227 0.5967 17 6 10.5529 2.9730 1.0425 18 6 10.8197 2.6434 2.3410 19 6 9.7897 2.3560 3.2284 20 6 8.4882 2.3968 2.8199 21 6 8.1892 2.7319 1.4945 22 7 2.0184 -0.6906 -1.1961 23 6 2.1492 -0.0075 -2.3757 24 1 1.8927 1.0405 -2.4241 25 6 2.6124 -0.6617 -3.5089 26 7 2.9255 -1.9388 -3.4499 27 14 2.7916 0.2703 -5.1179 28 1 2.3764 1.6824 -4.9207 29 1 4.2087 0.2274 -5.5597 30 1 1.9313 -0.3582 -6.1524 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.7516 -1.7715 1.2056 35 1 1.6052 -0.2617 2.1370 36 1 3.6545 -1.0593 3.4195 37 1 3.8001 -2.4819 2.3596 38 1 5.1714 -1.3617 2.5384 39 1 3.3283 1.4129 1.9029 40 1 5.5297 2.9074 2.3317 41 1 4.8582 3.2956 0.7295 42 1 9.5934 2.7692 -2.4016 43 1 8.7421 4.3318 -2.4390 44 1 10.2928 4.1837 -1.5781 45 1 11.3629 3.1905 0.3620 46 1 11.8437 2.6057 2.6821 47 1 10.0213 2.0980 4.2512 48 1 7.6934 2.1718 3.5156 49 1 2.2491 -1.6317 -1.1525 50 1 3.2495 -2.3959 -4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134380726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:25 Heat of formation + Delta-G solvation = 55.663172 kcal Electronic energy + Delta-G solvation = -30339.256385 eV Core-core repulsion = 26367.853481 eV Total energy + Delta-G solvation = -3971.402903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.33952 -39.41876 -37.28966 -36.77513 -34.43679 -34.03478 -32.13992 -31.14216 -30.49585 -29.90635 -29.37568 -28.52528 -26.27798 -25.67351 -23.56518 -23.05234 -22.06105 -21.56567 -20.40156 -19.66167 -19.51654 -17.29187 -17.10503 -16.96914 -16.76467 -15.75390 -15.42291 -15.31987 -14.97881 -14.60758 -14.24773 -14.12458 -13.91127 -13.69080 -13.51581 -13.29523 -13.05977 -12.90447 -12.76680 -12.61514 -12.24017 -12.05981 -11.97491 -11.81278 -11.68783 -11.67768 -11.53952 -11.13883 -10.97257 -10.78598 -10.62978 -10.55598 -10.36314 -10.14837 -10.03363 -9.82495 -9.56277 -9.43222 -8.82043 -8.69761 -8.62472 -7.88193 -6.85420 -5.66901 -2.94453 0.90486 1.45196 2.32098 2.43783 3.03074 3.49732 3.54155 3.55122 3.57267 3.78471 4.29310 4.41113 4.56159 4.68211 4.84789 4.91639 5.05621 5.11103 5.13527 5.23276 5.26784 5.30705 5.37027 5.45410 5.49287 5.54540 5.58801 5.68240 5.70810 5.74848 5.92737 5.95182 6.00134 6.06646 6.18985 6.25638 6.34235 6.40204 6.42039 6.43332 6.50023 6.62373 6.75671 6.79020 6.87979 6.99791 7.01398 7.12575 7.67200 7.79028 7.87127 8.51510 8.63918 9.63040 10.20584 10.54385 11.56021 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.003386 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.454888 B = 8268.390136 C =10193.695681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.145 3.855 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.717 5.717 9 C 0.519 3.481 10 O -0.521 6.521 11 C -0.063 4.063 12 C 0.121 3.879 13 N -0.232 5.232 14 N -0.408 5.408 15 C 0.111 3.889 16 C 0.128 3.872 17 C -0.143 4.143 18 C -0.074 4.074 19 C -0.165 4.165 20 C -0.036 4.036 21 C -0.163 4.163 22 N -0.720 5.720 23 C -0.232 4.232 24 H 0.067 0.933 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.901 3.099 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.394 0.606 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.382 0.618 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.064 11.584 16.989 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.041 3.959 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.368 5.368 9 C 0.302 3.698 10 O -0.396 6.396 11 C -0.105 4.105 12 C -0.057 4.057 13 N -0.044 5.044 14 N -0.195 5.195 15 C -0.030 4.030 16 C 0.013 3.987 17 C -0.165 4.165 18 C -0.094 4.094 19 C -0.185 4.185 20 C -0.056 4.056 21 C -0.171 4.171 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.085 0.915 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.733 3.267 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.227 0.773 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.216 0.784 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.295 11.479 15.089 22.068 hybrid contribution 0.202 0.205 -0.273 0.396 sum 11.497 11.683 14.816 22.095 Atomic orbital electron populations 1.22461 0.99608 1.00762 0.99726 1.20224 0.91496 0.95575 0.86560 0.93599 1.22165 0.93792 1.02154 0.98781 1.21006 0.94989 0.80146 0.99801 0.87770 1.22175 1.01486 1.00153 0.98032 1.45897 1.16257 1.11667 1.63006 1.20088 0.82208 0.89149 0.78330 1.90769 1.50946 1.56220 1.41663 1.20051 0.91132 0.96237 1.03090 1.22627 0.94060 0.98851 0.90187 1.76644 0.91536 1.17966 1.18247 1.48102 1.02476 1.60644 1.08306 1.21736 0.95892 1.01590 0.83806 1.18835 0.94589 0.98824 0.86439 1.19777 0.92428 1.07318 0.96945 1.20663 0.99339 0.96944 0.92477 1.20604 0.92356 1.05406 1.00115 1.20319 0.96860 0.95340 0.93078 1.19698 0.91603 1.10416 0.95364 1.42398 1.77938 1.10546 1.05293 1.19191 1.36140 0.93648 0.87306 0.91471 1.24678 1.02252 0.95922 0.97935 1.69655 1.51116 1.08635 1.28614 0.86197 0.77272 0.78827 0.84414 1.20654 1.22004 1.22026 0.92952 0.93580 0.94722 0.90724 0.92052 0.93149 0.91864 0.92574 0.77250 0.86941 0.86806 0.91120 0.89347 0.89976 0.86004 0.85586 0.85776 0.85752 0.78384 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.26 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.98 4.29 -26.73 -0.11 -2.09 16 5 C 0.14 2.35 2.52 -67.93 -0.17 2.18 16 6 H 0.10 2.28 7.05 -51.93 -0.37 1.92 16 7 C -0.16 -2.21 9.48 37.16 0.35 -1.85 16 8 N -0.72 -10.20 4.45 -53.81 -0.24 -10.43 16 9 C 0.52 8.58 7.79 -10.99 -0.09 8.50 16 10 O -0.52 -11.48 15.70 5.56 0.09 -11.39 16 11 C -0.06 -0.80 6.29 -29.04 -0.18 -0.99 16 12 C 0.12 1.91 5.92 -80.19 -0.48 1.44 16 13 N -0.23 -4.08 12.40 34.84 0.43 -3.65 16 14 N -0.41 -6.16 4.05 -65.47 -0.27 -6.42 16 15 C 0.11 1.18 11.40 59.85 0.68 1.86 16 16 C 0.13 1.83 6.87 -84.17 -0.58 1.25 16 17 C -0.14 -1.59 9.97 -39.79 -0.40 -1.99 16 18 C -0.07 -0.71 9.96 -39.91 -0.40 -1.11 16 19 C -0.17 -1.65 9.97 -39.95 -0.40 -2.05 16 20 C -0.04 -0.42 10.07 -39.58 -0.40 -0.82 16 21 C -0.16 -2.38 6.33 -105.21 -0.67 -3.05 16 22 N -0.72 -17.94 4.49 -53.42 -0.24 -18.18 16 23 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 27 Si 0.90 23.54 29.55 -169.99 -5.02 18.52 16 28 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 30 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.39 4.19 8.60 -40.82 -0.35 3.84 16 40 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.38 10.26 7.80 -40.82 -0.32 9.94 16 50 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 418.86 15.07 6.31 6.31 Total: -1.00 -38.32 418.86 -9.29 -47.61 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.16 Total: 11.40 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.92 Total: -5.35 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: 0.41 Total: -67.09 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -38.32 -9.29 -47.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.272 kcal (2) G-P(sol) polarization free energy of solvation -38.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds