Wall clock time and date at job start Wed Apr 1 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46991 * 2 1 4 4 C 1.53004 * 109.46952 * 119.99979 * 2 1 3 5 5 C 1.52995 * 109.47143 * 185.00527 * 4 2 1 6 6 H 1.09003 * 109.46791 * 304.99881 * 5 4 2 7 7 C 1.52996 * 109.47262 * 185.00062 * 5 4 2 8 8 N 1.46501 * 109.47291 * 64.99596 * 5 4 2 9 9 C 1.34774 * 119.99708 * 204.99981 * 8 5 4 10 10 O 1.21283 * 120.00541 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99836 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47277 * 180.02562 * 11 9 8 13 13 N 1.30248 * 126.10509 * 90.02330 * 12 11 9 14 14 N 1.39871 * 110.08383 * 179.97438 * 13 12 11 15 15 C 1.46503 * 125.46007 * 179.97438 * 14 13 12 16 16 C 1.37041 * 109.07669 * 0.02562 * 14 13 12 17 17 C 1.39285 * 133.84755 * 180.02562 * 16 14 13 18 18 C 1.36594 * 119.85306 * 179.97438 * 17 16 14 19 19 C 1.38961 * 120.81271 * 359.97438 * 18 17 16 20 20 C 1.36472 * 120.63123 * 0.02562 * 19 18 17 21 21 C 1.39945 * 119.63411 * 359.97438 * 20 19 18 22 22 N 1.46499 * 109.47208 * 239.99844 * 2 1 3 23 23 C 1.36934 * 120.00011 * 85.00163 * 22 2 1 24 24 H 1.08005 * 119.99813 * 0.02562 * 23 22 2 25 25 C 1.38804 * 120.00196 * 179.97438 * 23 22 2 26 26 N 1.31622 * 120.00293 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00367 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46716 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47244 * 120.00137 * 27 25 23 30 30 H 1.48499 * 109.47084 * 240.00658 * 27 25 23 31 31 H 1.09005 * 109.46735 * 60.00276 * 1 2 3 32 32 H 1.08998 * 109.46991 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47328 * 300.00002 * 1 2 3 34 34 H 1.09003 * 109.47019 * 64.99730 * 4 2 1 35 35 H 1.09009 * 109.46674 * 305.00372 * 4 2 1 36 36 H 1.09003 * 109.47070 * 299.99649 * 7 5 4 37 37 H 1.09004 * 109.47256 * 59.99645 * 7 5 4 38 38 H 1.08995 * 109.47739 * 179.97438 * 7 5 4 39 39 H 0.96997 * 120.00107 * 25.00154 * 8 5 4 40 40 H 1.09003 * 109.47499 * 60.00212 * 11 9 8 41 41 H 1.09005 * 109.47153 * 300.00187 * 11 9 8 42 42 H 1.08993 * 109.47421 * 270.02829 * 15 14 13 43 43 H 1.08993 * 109.47133 * 30.03451 * 15 14 13 44 44 H 1.09000 * 109.46736 * 150.02965 * 15 14 13 45 45 H 1.08007 * 120.07549 * 359.71632 * 17 16 14 46 46 H 1.08000 * 119.59067 * 179.97438 * 18 17 16 47 47 H 1.07999 * 119.68981 * 180.02562 * 19 18 17 48 48 H 1.07995 * 120.18603 * 179.97438 * 20 19 18 49 49 H 0.96994 * 119.99934 * 264.99648 * 22 2 1 50 50 H 0.96995 * 120.00449 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3870 7 6 4.0851 -1.4382 2.4926 8 7 3.9479 0.7895 1.4926 9 6 5.1611 1.2136 1.0869 10 8 5.9356 0.4342 0.5735 11 6 5.5554 2.6563 1.2712 12 6 6.9489 2.8684 0.7380 13 7 7.2611 3.2064 -0.4805 14 7 8.6500 3.3118 -0.6087 15 6 9.3653 3.6721 -1.8354 16 6 9.2343 3.0227 0.5967 17 6 10.5529 2.9730 1.0425 18 6 10.8197 2.6434 2.3410 19 6 9.7897 2.3560 3.2284 20 6 8.4882 2.3968 2.8199 21 6 8.1892 2.7319 1.4945 22 7 2.0184 -0.6906 -1.1961 23 6 2.1492 -0.0075 -2.3757 24 1 1.8927 1.0405 -2.4241 25 6 2.6124 -0.6617 -3.5089 26 7 2.9255 -1.9388 -3.4499 27 14 2.7916 0.2703 -5.1179 28 1 2.3764 1.6824 -4.9207 29 1 4.2087 0.2274 -5.5597 30 1 1.9313 -0.3582 -6.1524 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.7516 -1.7715 1.2056 35 1 1.6052 -0.2617 2.1370 36 1 3.6545 -1.0593 3.4195 37 1 3.8001 -2.4819 2.3596 38 1 5.1714 -1.3617 2.5384 39 1 3.3283 1.4129 1.9029 40 1 5.5297 2.9074 2.3317 41 1 4.8582 3.2956 0.7295 42 1 9.5934 2.7692 -2.4016 43 1 8.7421 4.3318 -2.4390 44 1 10.2928 4.1837 -1.5781 45 1 11.3629 3.1905 0.3620 46 1 11.8437 2.6057 2.6821 47 1 10.0213 2.0980 4.2512 48 1 7.6934 2.1718 3.5156 49 1 2.2491 -1.6317 -1.1525 50 1 3.2495 -2.3959 -4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134380726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:24 Heat of formation + Delta-G solvation = 28.885188 kcal Electronic energy + Delta-G solvation = -30340.417565 eV Core-core repulsion = 26367.853481 eV Total energy + Delta-G solvation = -3972.564084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30790 -40.72650 -38.35407 -38.08402 -36.04347 -35.09672 -34.01636 -32.46993 -31.33278 -30.84542 -30.60974 -30.23541 -27.56533 -26.62157 -25.67115 -23.96036 -23.10315 -22.65244 -21.74935 -21.14294 -20.58726 -19.29503 -18.13066 -18.01129 -17.90953 -17.09174 -16.61815 -16.42499 -16.21037 -16.00638 -15.67574 -15.45558 -15.17941 -14.95071 -14.73898 -14.54888 -14.28012 -14.15774 -13.85969 -13.62181 -13.57223 -13.34577 -13.22674 -13.01906 -12.95344 -12.79507 -12.72930 -12.65244 -12.62247 -12.21698 -12.17108 -11.95098 -11.80794 -11.66428 -11.54802 -11.39036 -11.07557 -10.93686 -10.70322 -9.92537 -9.63832 -8.94917 -8.80502 -7.94024 -5.18384 0.00904 0.58238 1.33115 1.37898 1.40938 1.47206 1.48505 1.76381 2.42565 2.53961 2.89195 3.34300 3.41160 3.48299 3.70161 3.84035 3.96483 4.05002 4.11371 4.15241 4.21919 4.29465 4.34604 4.43551 4.45110 4.47962 4.53845 4.58533 4.61503 4.67505 4.73308 4.83058 4.86811 4.96119 4.98126 5.07037 5.09468 5.13030 5.27651 5.38232 5.42034 5.46263 5.52265 5.54233 5.61151 5.66001 5.72390 5.94066 6.13722 6.29975 6.63123 6.71515 7.35470 7.44697 8.17300 8.35454 9.30216 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.003386 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.454888 B = 8268.390136 C =10193.695681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.045 0.955 4 C -0.116 4.116 5 C 0.147 3.853 6 H 0.038 0.962 7 C -0.149 4.149 8 N -0.701 5.701 9 C 0.514 3.486 10 O -0.586 6.586 11 C -0.056 4.056 12 C 0.107 3.893 13 N -0.287 5.287 14 N -0.421 5.421 15 C 0.104 3.896 16 C 0.102 3.898 17 C -0.153 4.153 18 C -0.067 4.067 19 C -0.162 4.162 20 C -0.049 4.049 21 C -0.193 4.193 22 N -0.732 5.732 23 C -0.220 4.220 24 H 0.070 0.930 25 C -0.080 4.080 26 N -0.970 5.970 27 Si 0.957 3.043 28 H -0.266 1.266 29 H -0.305 1.305 30 H -0.290 1.290 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.416 0.584 40 H 0.161 0.839 41 H 0.126 0.874 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.144 0.856 46 H 0.163 0.837 47 H 0.157 0.843 48 H 0.144 0.856 49 H 0.369 0.631 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.010 13.301 20.511 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.063 0.937 4 C -0.155 4.155 5 C 0.042 3.958 6 H 0.057 0.943 7 C -0.207 4.207 8 N -0.353 5.353 9 C 0.300 3.700 10 O -0.466 6.466 11 C -0.097 4.097 12 C -0.070 4.070 13 N -0.101 5.101 14 N -0.209 5.209 15 C -0.037 4.037 16 C -0.013 4.013 17 C -0.175 4.175 18 C -0.088 4.088 19 C -0.181 4.181 20 C -0.070 4.070 21 C -0.200 4.200 22 N -0.372 5.372 23 C -0.352 4.352 24 H 0.088 0.912 25 C -0.272 4.272 26 N -0.622 5.622 27 Si 0.788 3.212 28 H -0.190 1.190 29 H -0.234 1.234 30 H -0.217 1.217 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.253 0.747 40 H 0.178 0.822 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.134 0.866 45 H 0.162 0.838 46 H 0.180 0.820 47 H 0.174 0.826 48 H 0.162 0.838 49 H 0.200 0.800 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.169 13.267 18.672 25.483 hybrid contribution 0.266 -0.304 -1.229 1.294 sum 11.436 12.963 17.443 24.557 Atomic orbital electron populations 1.22306 0.97678 1.00798 1.00780 1.20562 0.92651 0.95385 0.85975 0.93677 1.22074 0.92714 1.02098 0.98589 1.20781 0.95537 0.81361 0.98084 0.94313 1.22060 1.00283 1.00024 0.98353 1.45746 1.16005 1.11418 1.62156 1.20764 0.81991 0.90243 0.77019 1.90746 1.52956 1.58238 1.44623 1.20182 0.90048 0.93369 1.06067 1.23123 0.95651 0.98168 0.90099 1.76495 0.93593 1.20206 1.19774 1.48363 1.01895 1.61082 1.09584 1.21985 0.97012 1.01660 0.83008 1.19369 0.95989 0.99631 0.86292 1.20175 0.91711 1.07380 0.98235 1.21174 1.01175 0.94782 0.91647 1.21076 0.91659 1.03672 1.01685 1.20664 0.98512 0.95468 0.92318 1.20057 0.91286 1.11848 0.96833 1.42626 1.78141 1.10065 1.06361 1.19543 1.33480 0.93745 0.88460 0.91181 1.25405 1.03768 0.96833 1.01168 1.69804 1.53385 1.10118 1.28887 0.85281 0.76301 0.78543 0.81051 1.18989 1.23362 1.21672 0.95309 0.94062 0.90209 0.90885 0.87032 0.89385 0.91675 0.94550 0.74658 0.82187 0.85648 0.91697 0.89269 0.86630 0.83785 0.81953 0.82568 0.83832 0.79984 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.49 71.98 0.68 -4.38 16 2 C 0.16 5.93 2.84 44.99 0.13 6.06 16 3 H 0.05 1.66 7.56 -2.39 -0.02 1.65 16 4 C -0.12 -3.25 4.29 30.59 0.13 -3.12 16 5 C 0.15 4.72 2.52 44.99 0.11 4.83 16 6 H 0.04 1.79 7.05 -2.39 -0.02 1.77 16 7 C -0.15 -3.89 9.48 71.98 0.68 -3.21 16 8 N -0.70 -19.03 4.45 -442.54 -1.97 -21.00 16 9 C 0.51 17.17 7.79 87.66 0.68 17.85 16 10 O -0.59 -27.30 15.70 -3.04 -0.05 -27.34 16 11 C -0.06 -1.38 6.29 29.10 0.18 -1.19 16 12 C 0.11 3.48 5.92 44.78 0.27 3.75 16 13 N -0.29 -10.69 12.40 -43.70 -0.54 -11.24 16 14 N -0.42 -13.28 4.05 -361.05 -1.46 -14.74 16 15 C 0.10 2.30 11.40 127.77 1.46 3.75 16 16 C 0.10 2.94 6.87 39.21 0.27 3.21 16 17 C -0.15 -3.20 9.97 22.14 0.22 -2.98 16 18 C -0.07 -1.11 9.96 22.06 0.22 -0.89 16 19 C -0.16 -2.76 9.97 22.03 0.22 -2.54 16 20 C -0.05 -1.08 10.07 22.27 0.22 -0.86 16 21 C -0.19 -5.65 6.33 -20.24 -0.13 -5.78 16 22 N -0.73 -37.21 4.49 -322.94 -1.45 -38.66 16 23 C -0.22 -12.70 9.93 84.03 0.83 -11.87 16 24 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 26 N -0.97 -63.27 13.06 21.65 0.28 -62.99 16 27 Si 0.96 49.90 29.55 68.60 2.03 51.93 16 28 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 29 H -0.31 -16.41 7.11 99.48 0.71 -15.70 16 30 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 31 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.42 7.49 8.60 -92.71 -0.80 6.69 16 40 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.13 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 49 H 0.37 20.59 7.80 -92.71 -0.72 19.86 16 50 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -91.77 418.86 2.92 -88.85 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.57 Total: 36.99 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.65 Total: -1.81 kcal Atomic # 7 Polarization: -143.48 SS G_CDS: -5.14 Total: -148.62 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.03 Total: 51.93 kcal Total: -91.77 2.92 -88.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134380726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.733 kcal (2) G-P(sol) polarization free energy of solvation -91.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds