Wall clock time and date at job start Wed Apr 1 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47338 * 2 1 4 4 C 1.36938 * 119.99813 * 275.73163 * 3 2 1 5 5 H 1.08005 * 119.99687 * 33.27191 * 4 3 2 6 6 C 1.38810 * 120.00490 * 213.26807 * 4 3 2 7 7 N 1.31621 * 119.99459 * 17.26759 * 6 4 3 8 8 Si 1.86796 * 120.00448 * 197.26818 * 6 4 3 9 9 H 1.48507 * 109.47004 * 89.99857 * 8 6 4 10 10 H 1.48506 * 109.46895 * 209.99699 * 8 6 4 11 11 H 1.48498 * 109.46972 * 329.99910 * 8 6 4 12 12 C 1.46498 * 120.00173 * 95.72805 * 3 2 1 13 13 H 1.09001 * 109.46735 * 180.08448 * 12 3 2 14 14 C 1.53000 * 109.47005 * 60.08856 * 12 3 2 15 15 C 1.53001 * 109.47367 * 300.08240 * 12 3 2 16 16 N 1.46494 * 109.47294 * 305.00478 * 15 12 3 17 17 C 1.34777 * 120.00381 * 180.02562 * 16 15 12 18 18 O 1.21286 * 119.99486 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00339 * 179.97438 * 17 16 15 20 20 C 1.50693 * 109.46974 * 179.97438 * 19 17 16 21 21 N 1.30242 * 126.10763 * 90.02696 * 20 19 17 22 22 N 1.39877 * 110.08642 * 179.97438 * 21 20 19 23 23 C 1.46507 * 125.46131 * 179.97438 * 22 21 20 24 24 C 1.37035 * 109.08118 * 359.97438 * 22 21 20 25 25 C 1.39285 * 133.85245 * 180.02562 * 24 22 21 26 26 C 1.36589 * 119.85046 * 179.97438 * 25 24 22 27 27 C 1.38969 * 120.81952 * 359.97438 * 26 25 24 28 28 C 1.36465 * 120.62376 * 0.02562 * 27 26 25 29 29 C 1.39948 * 119.63927 * 0.27193 * 28 27 26 30 30 H 1.09003 * 109.46680 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47499 * 299.99920 * 1 2 3 32 32 H 1.09002 * 109.47140 * 60.00380 * 1 2 3 33 33 H 1.09002 * 109.47375 * 239.99340 * 2 1 3 34 34 H 1.09002 * 109.47140 * 119.99620 * 2 1 3 35 35 H 0.97000 * 120.00240 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47551 * 59.99665 * 14 12 3 37 37 H 1.09001 * 109.47228 * 180.02562 * 14 12 3 38 38 H 1.09009 * 109.46768 * 299.99497 * 14 12 3 39 39 H 1.08997 * 109.47219 * 184.99608 * 15 12 3 40 40 H 1.09005 * 109.46753 * 65.00218 * 15 12 3 41 41 H 0.97006 * 120.00156 * 359.97438 * 16 15 12 42 42 H 1.09003 * 109.46922 * 60.00216 * 19 17 16 43 43 H 1.08991 * 109.47234 * 299.99940 * 19 17 16 44 44 H 1.09002 * 109.46560 * 270.02484 * 23 22 21 45 45 H 1.08998 * 109.46679 * 30.01916 * 23 22 21 46 46 H 1.08994 * 109.46960 * 150.02507 * 23 22 21 47 47 H 1.07994 * 120.07411 * 359.97438 * 25 24 22 48 48 H 1.08004 * 119.59201 * 180.02562 * 26 25 24 49 49 H 1.07996 * 119.69107 * 180.02562 * 27 26 25 50 50 H 1.08003 * 120.18266 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8809 -1.9831 6 6 3.1501 2.9986 -1.3440 7 7 4.1871 2.9917 -0.5335 8 14 3.0446 4.2629 -2.7150 9 1 2.3488 5.4766 -2.2165 10 1 4.4140 4.6253 -3.1606 11 1 2.2869 3.6921 -3.8575 12 6 2.3819 2.0296 1.2624 13 1 2.7190 3.0471 1.0642 14 6 3.5076 1.2413 1.9349 15 6 1.1629 2.0670 2.1862 16 7 0.0466 2.7175 1.4956 17 6 -1.1387 2.8643 2.1202 18 8 -1.2812 2.4573 3.2538 19 6 -2.2868 3.5339 1.4100 20 6 -3.4874 3.5706 2.3199 21 7 -3.7870 4.5220 3.1574 22 7 -4.9729 4.2129 3.8316 23 6 -5.6155 5.0493 4.8483 24 6 -5.4375 3.0022 3.3885 25 6 -6.5482 2.2219 3.7008 26 6 -6.7399 1.0274 3.0666 27 6 -5.8390 0.5770 2.1091 28 6 -4.7420 1.3201 1.7828 29 6 -4.5201 2.5446 2.4231 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.8964 3.6434 -0.6477 36 1 4.3761 1.2147 1.2767 37 1 3.7779 1.7235 2.8743 38 1 3.1705 0.2238 2.1330 39 1 1.4079 2.6271 3.0886 40 1 0.8800 1.0494 2.4557 41 1 0.1607 3.0433 0.5891 42 1 -2.5322 2.9738 0.5077 43 1 -2.0035 4.5513 1.1404 44 1 -5.2338 4.7813 5.8335 45 1 -5.3971 6.0981 4.6470 46 1 -6.6935 4.8909 4.8209 47 1 -7.2562 2.5605 4.4427 48 1 -7.6029 0.4259 3.3117 49 1 -6.0087 -0.3701 1.6187 50 1 -4.0462 0.9630 1.0380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153413514.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:42 Heat of formation + Delta-G solvation = 71.508272 kcal Electronic energy + Delta-G solvation = -30728.609849 eV Core-core repulsion = 26757.894041 eV Total energy + Delta-G solvation = -3970.715808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.35169 -39.17801 -37.28698 -36.87804 -34.13802 -33.58850 -31.88204 -31.24331 -30.51398 -30.08505 -29.73285 -28.15226 -26.11507 -24.82851 -23.92929 -23.00690 -21.96339 -21.69252 -20.48709 -19.48468 -19.10653 -17.14099 -17.10414 -16.90385 -16.52689 -15.53143 -15.45842 -15.28244 -15.02680 -14.67172 -14.33230 -14.15382 -13.94328 -13.66975 -13.29893 -13.18062 -12.88211 -12.79237 -12.66809 -12.50276 -12.27075 -11.99401 -11.82905 -11.75835 -11.69613 -11.44118 -11.13111 -11.06302 -10.94698 -10.81741 -10.69380 -10.63436 -10.29260 -10.07090 -10.04317 -9.62733 -9.43083 -9.37164 -8.70530 -8.51776 -8.35516 -7.89390 -6.67142 -5.88370 -3.37334 0.89771 1.45278 2.28630 2.41267 3.09635 3.31055 3.39868 3.40696 3.67068 3.90766 4.28627 4.41688 4.42776 4.55613 4.86949 4.90827 5.02447 5.11550 5.23242 5.26089 5.29323 5.31986 5.40839 5.43417 5.48865 5.60872 5.73215 5.92286 5.94890 6.06559 6.20487 6.26356 6.27722 6.39496 6.42619 6.45699 6.50700 6.56123 6.64358 6.69477 6.75866 6.84544 6.91900 6.98511 7.10194 7.16892 7.49376 7.58470 7.62783 7.77059 8.17301 8.43067 8.76807 9.15971 9.77473 10.34768 11.18129 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.002834 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.175025 B = 9877.213537 C =10235.228635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.145 4.145 15 C 0.104 3.896 16 N -0.700 5.700 17 C 0.512 3.488 18 O -0.549 6.549 19 C -0.066 4.066 20 C 0.130 3.870 21 N -0.243 5.243 22 N -0.412 5.412 23 C 0.113 3.887 24 C 0.128 3.872 25 C -0.146 4.146 26 C -0.072 4.072 27 C -0.164 4.164 28 C -0.033 4.033 29 C -0.163 4.163 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.412 0.588 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.125 0.875 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.045 -0.422 6.372 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.204 1.204 12 C 0.070 3.930 13 H 0.117 0.883 14 C -0.204 4.204 15 C -0.022 4.022 16 N -0.351 5.351 17 C 0.296 3.704 18 O -0.428 6.428 19 C -0.108 4.108 20 C -0.048 4.048 21 N -0.056 5.056 22 N -0.199 5.199 23 C -0.028 4.028 24 C 0.013 3.987 25 C -0.168 4.168 26 C -0.092 4.092 27 C -0.184 4.184 28 C -0.053 4.053 29 C -0.170 4.170 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.248 0.752 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.139 0.861 48 H 0.144 0.856 49 H 0.143 0.857 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.690 0.664 7.790 20.259 hybrid contribution -0.165 0.143 -1.248 1.267 sum -18.854 0.806 6.543 19.974 Atomic orbital electron populations 1.22454 1.00046 0.99013 1.01525 1.20748 0.91721 0.87438 0.98674 1.43890 1.75979 1.08272 1.02265 1.19099 1.08582 1.18187 0.93395 0.91775 1.25163 0.94523 1.01366 0.97826 1.70008 1.07862 1.35841 1.39599 0.86392 0.76935 0.81934 0.82069 1.21339 1.21857 1.20401 1.20490 0.88887 0.99496 0.84177 0.88255 1.22027 1.01161 0.97966 0.99231 1.22151 0.88066 0.96223 0.95743 1.45920 1.10762 1.59258 1.19127 1.20123 0.83715 0.79926 0.86684 1.90693 1.83178 1.50392 1.18530 1.20085 0.89386 1.04259 0.97101 1.22696 0.95144 0.91049 0.95921 1.76547 0.98249 1.23335 1.07422 1.48045 1.19746 1.16206 1.35931 1.21694 0.96770 0.95245 0.89102 1.18818 0.96103 0.87836 0.95936 1.19748 0.97088 0.95807 1.04116 1.20679 0.98722 0.94737 0.95105 1.20635 0.95995 1.01003 1.00774 1.20402 0.96358 0.91385 0.97163 1.19715 0.96890 0.97958 1.02487 0.94889 0.92891 0.93400 0.94171 0.94583 0.93556 0.90303 0.94885 0.95175 0.93080 0.92870 0.75173 0.86625 0.86943 0.91388 0.89529 0.90012 0.86074 0.85572 0.85657 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.87 37.16 0.37 -2.58 16 2 C 0.14 2.77 5.67 -4.04 -0.02 2.75 16 3 N -0.58 -12.76 1.85 -165.66 -0.31 -13.06 16 4 C -0.26 -6.35 9.26 -15.06 -0.14 -6.49 16 5 H 0.06 1.55 7.89 -52.48 -0.41 1.14 16 6 C 0.01 0.29 4.85 -17.43 -0.08 0.20 16 7 N -0.89 -23.36 10.60 55.49 0.59 -22.77 16 8 Si 0.90 19.96 29.59 -169.99 -5.03 14.93 16 9 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.18 3.74 1.92 -67.93 -0.13 3.60 16 13 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 14 C -0.14 -2.95 9.05 37.16 0.34 -2.61 16 15 C 0.10 1.99 4.34 -4.04 -0.02 1.97 16 16 N -0.70 -12.35 3.99 -60.30 -0.24 -12.59 16 17 C 0.51 8.94 7.59 -10.99 -0.08 8.85 16 18 O -0.55 -11.65 16.03 5.55 0.09 -11.56 16 19 C -0.07 -0.93 6.29 -29.04 -0.18 -1.11 16 20 C 0.13 2.04 5.92 -80.19 -0.48 1.57 16 21 N -0.24 -3.96 12.40 34.84 0.43 -3.53 16 22 N -0.41 -5.72 4.05 -65.47 -0.27 -5.98 16 23 C 0.11 1.01 11.40 59.85 0.68 1.69 16 24 C 0.13 1.76 6.87 -84.17 -0.58 1.18 16 25 C -0.15 -1.57 9.97 -39.79 -0.40 -1.97 16 26 C -0.07 -0.70 9.96 -39.91 -0.40 -1.09 16 27 C -0.16 -1.74 9.97 -39.95 -0.40 -2.14 16 28 C -0.03 -0.41 10.07 -39.58 -0.40 -0.81 16 29 C -0.16 -2.41 6.33 -105.20 -0.67 -3.08 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.94 4.99 -51.93 -0.26 0.68 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.04 0.69 6.45 -51.93 -0.33 0.36 16 35 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.08 1.82 7.40 -51.93 -0.38 1.44 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.57 6.67 -51.92 -0.35 0.22 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.05 7.05 -51.93 -0.37 0.68 16 41 H 0.41 7.26 7.90 -40.82 -0.32 6.93 16 42 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 50 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -31.24 405.44 -9.00 -40.24 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -7.79 Total: 8.29 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.59 Total: -0.07 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.21 Total: -57.94 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.24 -9.00 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153413514.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.747 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds