Wall clock time and date at job start Wed Apr 1 2020 03:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47301 * 2 1 4 4 C 1.36934 * 119.99867 * 274.49864 * 3 2 1 5 5 H 1.07999 * 120.00384 * 33.70964 * 4 3 2 6 6 C 1.38813 * 119.99602 * 213.71280 * 4 3 2 7 7 N 1.31618 * 120.00056 * 17.33007 * 6 4 3 8 8 Si 1.86802 * 119.99715 * 197.33051 * 6 4 3 9 9 H 1.48495 * 109.47222 * 90.00009 * 8 6 4 10 10 H 1.48499 * 109.46928 * 209.99741 * 8 6 4 11 11 H 1.48497 * 109.47173 * 329.99487 * 8 6 4 12 12 C 1.46498 * 119.99676 * 94.49491 * 3 2 1 13 13 H 1.09003 * 109.46462 * 179.46597 * 12 3 2 14 14 C 1.52993 * 109.47265 * 59.46197 * 12 3 2 15 15 C 1.53005 * 109.47191 * 299.45735 * 12 3 2 16 16 N 1.46502 * 109.47402 * 305.00394 * 15 12 3 17 17 C 1.34767 * 120.00191 * 180.02562 * 16 15 12 18 18 O 1.21728 * 120.00041 * 359.97438 * 17 16 15 19 19 C 1.46568 * 120.00429 * 180.02562 * 17 16 15 20 20 C 1.40559 * 126.57367 * 359.97438 * 19 17 16 21 21 N 1.30744 * 108.74224 * 179.97438 * 20 19 17 22 22 N 1.40018 * 109.60254 * 359.97438 * 21 20 19 23 23 C 1.36574 * 107.90932 * 0.02562 * 22 21 20 24 24 C 1.40093 * 120.23470 * 179.97438 * 23 22 21 25 25 C 1.36446 * 119.25140 * 0.02562 * 24 23 22 26 26 C 1.40158 * 119.41177 * 0.02562 * 25 24 23 27 27 C 1.50699 * 119.84387 * 179.97438 * 26 25 24 28 28 C 1.35189 * 120.31743 * 359.97102 * 26 25 24 29 29 C 1.50701 * 119.64525 * 180.02562 * 28 26 25 30 30 H 1.09003 * 109.46719 * 299.99628 * 1 2 3 31 31 H 1.08993 * 109.47055 * 59.99765 * 1 2 3 32 32 H 1.09005 * 109.46965 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46769 * 239.99941 * 2 1 3 34 34 H 1.09007 * 109.47275 * 120.00267 * 2 1 3 35 35 H 0.96999 * 119.99548 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.47007 * 179.97438 * 14 12 3 37 37 H 1.09004 * 109.47227 * 299.99415 * 14 12 3 38 38 H 1.09003 * 109.47143 * 59.99970 * 14 12 3 39 39 H 1.08994 * 109.47225 * 185.00368 * 15 12 3 40 40 H 1.08997 * 109.46662 * 65.00271 * 15 12 3 41 41 H 0.97008 * 119.99543 * 359.97438 * 16 15 12 42 42 H 1.07999 * 125.63318 * 359.96127 * 20 19 17 43 43 H 1.07994 * 120.37219 * 180.29991 * 24 23 22 44 44 H 1.08001 * 120.29555 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.47408 * 96.20884 * 27 26 25 46 46 H 1.08999 * 109.47377 * 216.20537 * 27 26 25 47 47 H 1.09000 * 109.46853 * 336.20721 * 27 26 25 48 48 H 1.09001 * 109.47106 * 83.78374 * 29 28 26 49 49 H 1.09001 * 109.47202 * 203.77751 * 29 28 26 50 50 H 1.09000 * 109.47704 * 323.78131 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.0577 -1.1822 5 1 1.4731 1.8719 -1.9956 6 6 3.1830 2.9822 -1.3353 7 7 4.2070 2.9729 -0.5085 8 14 3.1077 4.2396 -2.7148 9 1 2.4126 5.4606 -2.2342 10 1 4.4864 4.5901 -3.1408 11 1 2.3643 3.6674 -3.8660 12 6 2.3563 2.0386 1.2648 13 1 2.7078 3.0509 1.0655 14 6 3.4571 1.2466 1.9731 15 6 1.1148 2.0964 2.1572 16 7 0.0224 2.7504 1.4325 17 6 -1.1766 2.9142 2.0255 18 8 -1.3522 2.5183 3.1631 19 6 -2.2697 3.5681 1.3003 20 6 -2.2205 4.0745 -0.0100 21 7 -3.3879 4.5821 -0.3083 22 7 -4.2558 4.4360 0.7807 23 6 -3.5712 3.8087 1.7822 24 6 -4.2019 3.5320 3.0021 25 6 -5.5054 3.8957 3.1763 26 6 -6.1863 4.5373 2.1326 27 6 -7.6263 4.9428 2.3142 28 6 -5.5574 4.7943 0.9638 29 6 -6.3039 5.4855 -0.1480 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 4.9224 3.6193 -0.6152 36 1 3.7088 1.7360 2.9140 37 1 3.1055 0.2342 2.1725 38 1 4.3416 1.2055 1.3374 39 1 1.3423 2.6630 3.0600 40 1 0.8155 1.0842 2.4292 41 1 0.1625 3.0662 0.5260 42 1 -1.3604 4.0487 -0.6626 43 1 -3.6612 3.0404 3.7972 44 1 -6.0081 3.6910 4.1100 45 1 -7.6740 5.9890 2.6162 46 1 -8.1622 4.8113 1.3742 47 1 -8.0845 4.3213 3.0836 48 1 -6.2735 6.5637 0.0094 49 1 -5.8376 5.2446 -1.1033 50 1 -7.3404 5.1483 -0.1544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153879543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:38 Heat of formation + Delta-G solvation = 79.573705 kcal Electronic energy + Delta-G solvation = -31000.807165 eV Core-core repulsion = 27030.441100 eV Total energy + Delta-G solvation = -3970.366065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.23861 -38.99628 -37.89849 -36.75035 -34.00502 -33.51234 -32.59114 -31.83629 -31.02386 -29.67167 -28.58354 -28.13339 -26.54135 -25.23716 -23.89455 -23.15190 -22.25230 -21.69242 -21.54326 -19.49671 -19.13152 -17.75562 -16.98608 -16.55165 -16.22270 -16.07254 -15.32700 -15.15369 -14.71105 -14.63524 -14.30255 -14.18954 -13.72251 -13.70712 -13.45930 -13.14634 -13.01261 -12.90295 -12.61731 -12.58818 -12.28146 -12.09239 -12.02495 -11.83727 -11.76731 -11.50718 -11.44929 -11.02718 -10.91924 -10.82440 -10.77898 -10.59770 -10.29894 -10.25116 -10.02703 -9.58123 -9.39037 -9.33755 -9.33134 -8.48785 -8.30686 -7.56487 -6.62993 -5.85756 -3.34713 0.54191 0.88708 2.05206 2.31197 3.07761 3.32870 3.41834 3.42476 3.81675 3.95238 4.11662 4.39885 4.44035 4.49248 4.58345 4.67185 4.98255 5.02654 5.19947 5.21745 5.28352 5.29228 5.30130 5.37739 5.43837 5.53607 5.69215 5.71925 5.95606 6.04496 6.05091 6.12742 6.26741 6.28752 6.32863 6.43907 6.45464 6.56100 6.60653 6.69184 6.74527 6.75593 6.88443 6.97058 7.20168 7.23181 7.43992 7.53280 7.61773 7.79788 8.32910 8.46605 8.91771 9.19111 9.80614 10.38457 11.20641 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.003191 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.727569 B = 8771.349841 C = 9927.870700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.176 3.824 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.105 3.895 16 N -0.698 5.698 17 C 0.590 3.410 18 O -0.572 6.572 19 C -0.299 4.299 20 C 0.121 3.879 21 N -0.320 5.320 22 N -0.265 5.265 23 C 0.157 3.843 24 C -0.103 4.103 25 C -0.077 4.077 26 C -0.136 4.136 27 C -0.100 4.100 28 C 0.135 3.865 29 C -0.116 4.116 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.408 0.592 42 H 0.202 0.798 43 H 0.161 0.839 44 H 0.143 0.857 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.284 3.680 5.413 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.303 5.303 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.068 3.932 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.347 5.347 17 C 0.378 3.622 18 O -0.454 6.454 19 C -0.314 4.314 20 C -0.059 4.059 21 N -0.141 5.141 22 N -0.029 5.029 23 C 0.036 3.964 24 C -0.123 4.123 25 C -0.100 4.100 26 C -0.139 4.139 27 C -0.158 4.158 28 C 0.027 3.973 29 C -0.173 4.173 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.245 0.755 42 H 0.219 0.781 43 H 0.179 0.821 44 H 0.161 0.839 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.771 4.094 5.139 21.786 hybrid contribution 0.785 0.369 -0.600 1.054 sum -19.986 4.463 4.539 20.975 Atomic orbital electron populations 1.22459 0.99977 0.98910 1.01652 1.20755 0.91652 0.87440 0.98675 1.43868 1.76196 1.08291 1.01987 1.19097 1.08557 1.18811 0.92796 0.91851 1.25160 0.94535 1.01377 0.97729 1.70009 1.08102 1.36070 1.39051 0.86428 0.76973 0.81971 0.82226 1.21289 1.21820 1.20369 1.20498 0.88978 0.99331 0.84350 0.88303 1.22014 1.01249 0.98027 0.99058 1.22135 0.88521 0.96159 0.95207 1.45697 1.10597 1.59444 1.18960 1.16851 0.81696 0.78407 0.85279 1.90700 1.83108 1.52982 1.18564 1.19894 0.94728 1.19631 0.97115 1.24241 0.95531 0.91464 0.94649 1.77541 1.01203 1.29690 1.05715 1.45979 1.08555 1.37112 1.11249 1.19308 0.91981 0.95218 0.89882 1.20872 0.94717 1.01007 0.95700 1.21212 0.93903 0.96091 0.98813 1.19313 0.98150 1.03933 0.92543 1.20721 0.89904 1.02035 1.03094 1.19934 0.81088 0.98939 0.97295 1.20938 0.99790 1.00423 0.96126 0.92776 0.93545 0.95014 0.94127 0.94575 0.93575 0.94837 0.95112 0.90393 0.93043 0.92856 0.75518 0.78146 0.82141 0.83925 0.90722 0.90862 0.90820 0.89617 0.89752 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.84 37.16 0.37 -2.81 16 2 C 0.14 2.89 5.72 -4.04 -0.02 2.86 16 3 N -0.58 -13.10 1.85 -165.66 -0.31 -13.40 16 4 C -0.26 -6.50 9.23 -15.06 -0.14 -6.63 16 5 H 0.06 1.58 7.89 -52.49 -0.41 1.16 16 6 C 0.01 0.31 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.64 10.68 55.49 0.59 -23.04 16 8 Si 0.89 20.30 29.59 -169.99 -5.03 15.27 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.18 3.79 1.93 -67.93 -0.13 3.66 16 13 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 14 C -0.14 -2.97 9.05 37.15 0.34 -2.63 16 15 C 0.11 2.07 4.33 -4.04 -0.02 2.06 16 16 N -0.70 -13.25 4.03 -61.65 -0.25 -13.50 16 17 C 0.59 11.29 7.58 -12.91 -0.10 11.19 16 18 O -0.57 -12.08 15.71 5.16 0.08 -12.00 16 19 C -0.30 -5.17 6.17 -104.68 -0.65 -5.82 16 20 C 0.12 1.94 11.44 -17.14 -0.20 1.74 16 21 N -0.32 -5.07 12.18 30.75 0.37 -4.70 16 22 N -0.26 -3.88 3.85 -6.85 -0.03 -3.90 16 23 C 0.16 2.48 6.76 -84.07 -0.57 1.91 16 24 C -0.10 -1.37 9.73 -39.53 -0.38 -1.76 16 25 C -0.08 -0.75 9.73 -39.51 -0.38 -1.14 16 26 C -0.14 -1.23 5.84 -104.99 -0.61 -1.84 16 27 C -0.10 -0.51 9.44 36.01 0.34 -0.17 16 28 C 0.14 1.50 6.81 -81.72 -0.56 0.95 16 29 C -0.12 -0.92 9.48 36.01 0.34 -0.57 16 30 H 0.05 1.05 4.94 -51.93 -0.26 0.79 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.04 0.71 6.41 -51.93 -0.33 0.38 16 35 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.59 6.64 -51.93 -0.34 0.24 16 38 H 0.08 1.82 7.44 -51.93 -0.39 1.43 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.08 6.94 -51.93 -0.36 0.71 16 41 H 0.41 7.82 6.78 -40.82 -0.28 7.54 16 42 H 0.20 2.87 7.46 -52.49 -0.39 2.48 16 43 H 0.16 2.20 7.11 -52.49 -0.37 1.83 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.29 6.18 -51.93 -0.32 -0.03 16 47 H 0.07 0.29 8.05 -51.93 -0.42 -0.13 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 50 H 0.09 0.46 6.18 -51.93 -0.32 0.14 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -30.29 396.37 -8.48 -38.77 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.43 Total: 9.32 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.46 Total: 1.23 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.39 Total: -58.55 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.29 -8.48 -38.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153879543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.345 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds