Wall clock time and date at job start Wed Apr 1 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47301 * 2 1 4 4 C 1.36934 * 119.99867 * 274.49864 * 3 2 1 5 5 H 1.07999 * 120.00384 * 33.70964 * 4 3 2 6 6 C 1.38813 * 119.99602 * 213.71280 * 4 3 2 7 7 N 1.31618 * 120.00056 * 17.33007 * 6 4 3 8 8 Si 1.86802 * 119.99715 * 197.33051 * 6 4 3 9 9 H 1.48495 * 109.47222 * 90.00009 * 8 6 4 10 10 H 1.48499 * 109.46928 * 209.99741 * 8 6 4 11 11 H 1.48497 * 109.47173 * 329.99487 * 8 6 4 12 12 C 1.46498 * 119.99676 * 94.49491 * 3 2 1 13 13 H 1.09003 * 109.46462 * 179.46597 * 12 3 2 14 14 C 1.52993 * 109.47265 * 59.46197 * 12 3 2 15 15 C 1.53005 * 109.47191 * 299.45735 * 12 3 2 16 16 N 1.46502 * 109.47402 * 305.00394 * 15 12 3 17 17 C 1.34767 * 120.00191 * 180.02562 * 16 15 12 18 18 O 1.21728 * 120.00041 * 359.97438 * 17 16 15 19 19 C 1.46568 * 120.00429 * 180.02562 * 17 16 15 20 20 C 1.40559 * 126.57367 * 359.97438 * 19 17 16 21 21 N 1.30744 * 108.74224 * 179.97438 * 20 19 17 22 22 N 1.40018 * 109.60254 * 359.97438 * 21 20 19 23 23 C 1.36574 * 107.90932 * 0.02562 * 22 21 20 24 24 C 1.40093 * 120.23470 * 179.97438 * 23 22 21 25 25 C 1.36446 * 119.25140 * 0.02562 * 24 23 22 26 26 C 1.40158 * 119.41177 * 0.02562 * 25 24 23 27 27 C 1.50699 * 119.84387 * 179.97438 * 26 25 24 28 28 C 1.35189 * 120.31743 * 359.97102 * 26 25 24 29 29 C 1.50701 * 119.64525 * 180.02562 * 28 26 25 30 30 H 1.09003 * 109.46719 * 299.99628 * 1 2 3 31 31 H 1.08993 * 109.47055 * 59.99765 * 1 2 3 32 32 H 1.09005 * 109.46965 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46769 * 239.99941 * 2 1 3 34 34 H 1.09007 * 109.47275 * 120.00267 * 2 1 3 35 35 H 0.96999 * 119.99548 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.47007 * 179.97438 * 14 12 3 37 37 H 1.09004 * 109.47227 * 299.99415 * 14 12 3 38 38 H 1.09003 * 109.47143 * 59.99970 * 14 12 3 39 39 H 1.08994 * 109.47225 * 185.00368 * 15 12 3 40 40 H 1.08997 * 109.46662 * 65.00271 * 15 12 3 41 41 H 0.97008 * 119.99543 * 359.97438 * 16 15 12 42 42 H 1.07999 * 125.63318 * 359.96127 * 20 19 17 43 43 H 1.07994 * 120.37219 * 180.29991 * 24 23 22 44 44 H 1.08001 * 120.29555 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.47408 * 96.20884 * 27 26 25 46 46 H 1.08999 * 109.47377 * 216.20537 * 27 26 25 47 47 H 1.09000 * 109.46853 * 336.20721 * 27 26 25 48 48 H 1.09001 * 109.47106 * 83.78374 * 29 28 26 49 49 H 1.09001 * 109.47202 * 203.77751 * 29 28 26 50 50 H 1.09000 * 109.47704 * 323.78131 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.0577 -1.1822 5 1 1.4731 1.8719 -1.9956 6 6 3.1830 2.9822 -1.3353 7 7 4.2070 2.9729 -0.5085 8 14 3.1077 4.2396 -2.7148 9 1 2.4126 5.4606 -2.2342 10 1 4.4864 4.5901 -3.1408 11 1 2.3643 3.6674 -3.8660 12 6 2.3563 2.0386 1.2648 13 1 2.7078 3.0509 1.0655 14 6 3.4571 1.2466 1.9731 15 6 1.1148 2.0964 2.1572 16 7 0.0224 2.7504 1.4325 17 6 -1.1766 2.9142 2.0255 18 8 -1.3522 2.5183 3.1631 19 6 -2.2697 3.5681 1.3003 20 6 -2.2205 4.0745 -0.0100 21 7 -3.3879 4.5821 -0.3083 22 7 -4.2558 4.4360 0.7807 23 6 -3.5712 3.8087 1.7822 24 6 -4.2019 3.5320 3.0021 25 6 -5.5054 3.8957 3.1763 26 6 -6.1863 4.5373 2.1326 27 6 -7.6263 4.9428 2.3142 28 6 -5.5574 4.7943 0.9638 29 6 -6.3039 5.4855 -0.1480 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 4.9224 3.6193 -0.6152 36 1 3.7088 1.7360 2.9140 37 1 3.1055 0.2342 2.1725 38 1 4.3416 1.2055 1.3374 39 1 1.3423 2.6630 3.0600 40 1 0.8155 1.0842 2.4292 41 1 0.1625 3.0662 0.5260 42 1 -1.3604 4.0487 -0.6626 43 1 -3.6612 3.0404 3.7972 44 1 -6.0081 3.6910 4.1100 45 1 -7.6740 5.9890 2.6162 46 1 -8.1622 4.8113 1.3742 47 1 -8.0845 4.3213 3.0836 48 1 -6.2735 6.5637 0.0094 49 1 -5.8376 5.2446 -1.1033 50 1 -7.3404 5.1483 -0.1544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153879543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:37 Heat of formation + Delta-G solvation = 63.294911 kcal Electronic energy + Delta-G solvation = -31001.513067 eV Core-core repulsion = 27030.441100 eV Total energy + Delta-G solvation = -3971.071966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.29251 -40.44099 -38.92926 -38.42129 -35.20539 -34.81718 -33.75346 -33.50135 -32.62323 -30.78350 -29.90295 -29.31287 -27.61551 -26.47327 -25.76036 -24.27669 -23.42580 -23.03482 -22.77497 -21.02770 -20.71331 -18.93440 -18.62248 -17.79355 -17.34715 -17.11929 -16.77641 -16.47160 -16.33557 -16.05936 -15.51864 -15.38286 -15.22196 -14.68552 -14.61754 -14.30554 -14.22996 -13.95594 -13.76147 -13.68835 -13.59829 -13.46276 -13.24039 -13.15824 -12.96760 -12.78157 -12.70955 -12.54453 -12.46998 -12.38884 -12.34139 -12.03426 -11.87530 -11.80984 -11.35744 -11.31752 -11.14783 -10.83475 -10.41141 -10.28386 -9.85758 -8.64493 -8.50117 -7.80037 -5.30331 -0.40833 -0.08246 1.05595 1.06236 1.50235 1.54624 1.59883 2.10937 2.47559 2.56316 2.59762 3.09004 3.34086 3.50599 3.63477 3.68731 3.73678 3.90063 4.03168 4.25482 4.27635 4.41622 4.43607 4.48936 4.55549 4.55819 4.61902 4.71195 4.76016 4.83629 4.89391 4.91518 4.95594 5.00300 5.01843 5.08665 5.11570 5.19235 5.23682 5.24927 5.27324 5.33845 5.53083 5.57837 5.64247 5.72709 5.77406 5.79815 5.90691 6.32057 6.52777 6.81898 7.26454 7.42539 7.95030 8.48068 9.23803 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.003191 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.727569 B = 8771.349841 C = 9927.870700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.260 4.260 5 H 0.060 0.940 6 C -0.030 4.030 7 N -0.914 5.914 8 Si 0.949 3.051 9 H -0.285 1.285 10 H -0.302 1.302 11 H -0.273 1.273 12 C 0.182 3.818 13 H 0.069 0.931 14 C -0.135 4.135 15 C 0.119 3.881 16 N -0.697 5.697 17 C 0.593 3.407 18 O -0.599 6.599 19 C -0.341 4.341 20 C 0.121 3.879 21 N -0.339 5.339 22 N -0.266 5.266 23 C 0.147 3.853 24 C -0.139 4.139 25 C -0.046 4.046 26 C -0.122 4.122 27 C -0.100 4.100 28 C 0.112 3.888 29 C -0.113 4.113 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.407 0.593 42 H 0.207 0.793 43 H 0.149 0.851 44 H 0.184 0.816 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.065 0.935 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.232 4.198 6.013 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.391 4.391 5 H 0.078 0.922 6 C -0.227 4.227 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.211 1.211 10 H -0.229 1.229 11 H -0.198 1.198 12 C 0.075 3.925 13 H 0.087 0.913 14 C -0.194 4.194 15 C -0.007 4.007 16 N -0.346 5.346 17 C 0.382 3.618 18 O -0.483 6.483 19 C -0.356 4.356 20 C -0.059 4.059 21 N -0.160 5.160 22 N -0.030 5.030 23 C 0.026 3.974 24 C -0.159 4.159 25 C -0.069 4.069 26 C -0.125 4.125 27 C -0.157 4.157 28 C 0.005 3.995 29 C -0.169 4.169 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.243 0.757 42 H 0.223 0.777 43 H 0.167 0.833 44 H 0.201 0.799 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.084 0.916 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.745 4.608 5.720 25.812 hybrid contribution 1.740 0.224 -0.702 1.890 sum -23.005 4.832 5.018 24.036 Atomic orbital electron populations 1.22268 0.98367 1.00045 1.00778 1.20816 0.92715 0.86291 0.98657 1.43975 1.76313 1.09150 1.01740 1.19237 1.07872 1.18641 0.93307 0.92188 1.25693 0.94496 1.02935 0.99618 1.70137 1.08593 1.36558 1.40497 0.85561 0.76113 0.80175 0.80291 1.21146 1.22909 1.19817 1.20346 0.89895 0.97819 0.84428 0.91253 1.21874 0.99634 0.98842 0.99045 1.21877 0.87950 0.96117 0.94715 1.45632 1.10616 1.59608 1.18763 1.17076 0.81862 0.77855 0.84969 1.90661 1.83562 1.54384 1.19677 1.19732 0.95275 1.22575 0.98003 1.24298 0.95937 0.91266 0.94405 1.77443 1.01336 1.30573 1.06691 1.46206 1.09533 1.36729 1.10491 1.19568 0.91815 0.95089 0.90943 1.20914 0.96487 1.03590 0.94907 1.21766 0.92234 0.92591 1.00273 1.19942 0.99987 1.01539 0.91042 1.20906 0.86661 1.03300 1.04830 1.20859 0.80015 0.99305 0.99332 1.21072 1.00904 1.01033 0.93939 0.93653 0.94345 0.92815 0.94903 0.93745 0.94262 0.93157 0.93810 0.93260 0.93019 0.93056 0.75722 0.77680 0.83346 0.79876 0.89037 0.89167 0.88851 0.88184 0.91591 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 9.84 71.98 0.71 -5.03 16 2 C 0.14 5.76 5.72 86.38 0.49 6.25 16 3 N -0.59 -27.00 1.85 -678.03 -1.26 -28.26 16 4 C -0.26 -13.08 9.23 84.03 0.78 -12.30 16 5 H 0.06 3.02 7.89 -2.91 -0.02 3.00 16 6 C -0.03 -1.54 4.85 84.86 0.41 -1.13 16 7 N -0.91 -49.90 10.68 21.65 0.23 -49.66 16 8 Si 0.95 42.63 29.59 68.60 2.03 44.66 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 C 0.18 8.05 1.93 44.99 0.09 8.13 16 13 H 0.07 3.52 6.04 -2.39 -0.01 3.50 16 14 C -0.13 -5.61 9.05 71.98 0.65 -4.95 16 15 C 0.12 4.80 4.33 86.38 0.37 5.17 16 16 N -0.70 -27.48 4.03 -467.17 -1.88 -29.37 16 17 C 0.59 23.62 7.58 86.42 0.65 24.28 16 18 O -0.60 -26.21 15.71 -4.44 -0.07 -26.28 16 19 C -0.34 -12.30 6.17 -19.90 -0.12 -12.43 16 20 C 0.12 4.03 11.44 85.42 0.98 5.01 16 21 N -0.34 -10.94 12.18 -56.61 -0.69 -11.63 16 22 N -0.27 -7.68 3.85 -175.58 -0.68 -8.36 16 23 C 0.15 4.72 6.76 39.49 0.27 4.99 16 24 C -0.14 -3.62 9.73 22.30 0.22 -3.40 16 25 C -0.05 -0.74 9.73 22.32 0.22 -0.52 16 26 C -0.12 -1.72 5.84 -20.10 -0.12 -1.84 16 27 C -0.10 -0.45 9.44 71.24 0.67 0.23 16 28 C 0.11 2.23 6.81 41.17 0.28 2.51 16 29 C -0.11 -1.45 9.48 71.24 0.68 -0.77 16 30 H 0.04 1.76 4.94 -2.39 -0.01 1.75 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.04 1.73 6.41 -2.38 -0.02 1.72 16 35 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.67 6.64 -2.38 -0.02 1.65 16 38 H 0.05 2.33 7.44 -2.39 -0.02 2.32 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 2.09 6.94 -2.39 -0.02 2.07 16 41 H 0.41 16.27 6.78 -92.70 -0.63 15.64 16 42 H 0.21 6.25 7.46 -2.91 -0.02 6.23 16 43 H 0.15 4.17 7.11 -2.91 -0.02 4.15 16 44 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.09 0.17 6.18 -2.39 -0.01 0.16 16 47 H 0.09 0.14 8.05 -2.39 -0.02 0.12 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 1.13 7.88 -2.39 -0.02 1.11 16 50 H 0.12 0.71 6.18 -2.39 -0.01 0.69 16 Total: -1.00 -68.59 396.37 5.25 -63.34 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.34 Total: 31.37 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 7.22 Total: 14.20 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -4.27 Total: -127.28 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.07 Total: -26.28 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -68.59 5.25 -63.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153879543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.635 kcal (2) G-P(sol) polarization free energy of solvation -68.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds