Wall clock time and date at job start Wed Apr 1 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00309 * 13 11 9 15 15 H 1.48494 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47298 * 300.00594 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47002 * 179.97438 * 20 18 17 22 22 C 1.39686 * 119.13489 * 89.99714 * 21 20 18 23 23 C 1.35634 * 121.80998 * 180.02562 * 22 21 20 24 24 C 1.41148 * 119.59962 * 0.02562 * 23 22 21 25 25 N 1.32069 * 134.67918 * 180.02562 * 24 23 22 26 26 N 1.39955 * 108.95833 * 180.02562 * 25 24 23 27 27 H 0.96997 * 125.02253 * 180.02562 * 26 25 24 28 28 C 1.33984 * 109.95741 * 359.97438 * 26 25 24 29 29 C 1.38250 * 107.91112 * 0.02562 * 28 26 25 30 30 C 1.35651 * 119.13218 * 269.73142 * 21 20 18 31 31 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 32 32 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 33 33 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 35 35 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 36 36 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 37 37 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 38 38 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 39 39 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 40 40 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 41 41 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 42 42 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 43 43 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 44 44 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 45 45 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 46 46 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 47 47 H 1.07993 * 119.08926 * 0.02562 * 22 21 20 48 48 H 1.08008 * 120.19600 * 179.97438 * 23 22 21 49 49 H 1.08005 * 126.04965 * 180.02562 * 28 26 25 50 50 H 1.08000 * 120.23853 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.2348 -1.2697 5.7470 15 1 9.9550 -3.4093 6.8541 16 1 10.4352 -3.3270 4.4788 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 6 2.7001 0.2394 -4.7412 22 6 3.8684 0.9719 -4.9642 23 6 3.9727 1.8580 -5.9858 24 6 2.8767 2.0537 -6.8535 25 7 2.6530 2.8138 -7.9101 26 7 1.3521 2.5808 -8.3706 27 1 0.9462 3.0166 -9.1362 28 6 0.7506 1.6659 -7.5984 29 6 1.6460 1.2828 -6.6172 30 6 1.6113 0.3725 -5.5393 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -1.7713 1.2058 35 1 1.6053 -0.2615 2.1370 36 1 3.8530 0.4372 1.3574 37 1 3.9994 -1.0727 0.4262 38 1 3.6401 -0.8755 3.4507 39 1 3.7865 -2.3850 2.5188 40 1 6.0345 -1.6850 1.7398 41 1 5.8874 -0.1758 2.6719 42 1 5.4606 -2.3487 4.4245 43 1 7.3646 -3.6493 6.8350 44 1 2.2492 -1.6318 -1.1524 45 1 3.6494 -1.1205 -3.3977 46 1 1.9780 -1.5510 -3.8323 47 1 4.7118 0.8288 -4.3050 48 1 4.8885 2.4110 -6.1340 49 1 -0.2558 1.2935 -7.7207 50 1 0.7220 -0.2096 -5.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171765361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:03 Heat of formation + Delta-G solvation = 18.010291 kcal Electronic energy + Delta-G solvation = -28212.905830 eV Core-core repulsion = 24239.870175 eV Total energy + Delta-G solvation = -3973.035655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.17627 -40.82531 -38.54439 -37.75610 -36.71826 -34.71045 -33.74983 -32.94134 -32.15473 -31.56476 -30.81257 -28.78164 -27.83423 -25.90543 -24.97123 -23.76109 -22.69777 -21.99967 -21.64070 -21.56867 -21.17414 -19.10790 -19.08390 -17.96849 -17.67091 -17.22178 -16.66754 -16.38419 -16.29374 -15.90150 -15.80892 -15.39064 -15.33010 -15.12722 -14.85062 -14.63765 -14.52524 -14.14718 -14.00338 -13.94596 -13.28045 -13.06353 -12.85543 -12.82202 -12.81358 -12.72234 -12.58123 -12.41142 -12.30404 -12.21162 -12.17809 -11.85584 -11.75979 -11.44807 -11.34617 -11.28309 -11.24821 -10.91493 -10.70900 -9.92817 -9.67246 -8.99743 -8.51225 -7.95111 -5.24287 -0.27299 0.83399 1.47649 1.50477 1.50981 1.57274 1.83472 1.89418 2.37979 2.56687 2.95987 3.32425 3.38093 3.65467 3.78243 3.88401 4.07535 4.10379 4.14620 4.22520 4.26378 4.28483 4.40636 4.47607 4.50778 4.60508 4.64742 4.67031 4.69197 4.76735 4.82818 4.87689 4.92172 4.98563 5.03724 5.07020 5.19459 5.25061 5.30981 5.37461 5.47787 5.48152 5.50056 5.51808 5.56631 5.72041 5.76111 5.98786 6.27683 6.29961 6.61612 6.75326 7.33468 7.46306 8.10579 8.33905 9.28215 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.001611 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.514564 B =17375.270324 C =18833.452338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.253 4.253 10 H 0.073 0.927 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.276 1.276 17 N -0.715 5.715 18 C 0.512 3.488 19 O -0.581 6.581 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.058 4.058 23 C -0.138 4.138 24 C 0.081 3.919 25 N -0.358 5.358 26 N -0.417 5.417 27 H 0.459 0.541 28 C 0.112 3.888 29 C -0.238 4.238 30 C -0.026 4.026 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.011 0.989 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.414 0.586 45 H 0.121 0.879 46 H 0.132 0.868 47 H 0.135 0.865 48 H 0.126 0.874 49 H 0.239 0.761 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.639 4.718 -29.688 36.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.385 4.385 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.202 1.202 17 N -0.368 5.368 18 C 0.299 3.701 19 O -0.461 6.461 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.080 4.080 23 C -0.160 4.160 24 C -0.072 4.072 25 N -0.188 5.188 26 N -0.119 5.119 27 H 0.306 0.694 28 C -0.046 4.046 29 C -0.248 4.248 30 C -0.046 4.046 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.139 0.861 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.144 0.856 49 H 0.255 0.745 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.139 6.525 -30.583 37.195 hybrid contribution 0.644 -0.576 0.921 1.263 sum -19.495 5.948 -29.662 35.990 Atomic orbital electron populations 1.22097 0.94582 1.02800 1.01912 1.20869 0.94290 0.96504 0.84372 0.92074 1.21832 0.94665 1.02020 0.96883 1.21418 0.95860 0.99942 0.97003 1.21604 0.93673 1.01000 0.98741 1.20865 0.94316 0.94177 0.88516 1.42619 1.04481 1.65373 1.26676 1.19639 0.85403 1.27898 1.05517 0.90884 1.25589 1.02212 1.01153 0.97747 1.69805 1.34749 1.41838 1.15528 0.85191 0.79861 0.77608 0.76971 1.20522 1.21859 1.20242 1.46074 1.66994 1.14722 1.09027 1.21127 0.76710 0.86934 0.85296 1.90714 1.51583 1.18119 1.85666 1.20693 1.05712 0.97700 0.88955 1.18872 0.94587 1.00935 0.97889 1.20774 0.98063 0.93756 0.95448 1.19974 0.97023 1.02486 0.96470 1.21264 0.96440 0.95228 0.94262 1.77588 0.96986 1.27171 1.17043 1.46364 1.10018 1.30384 1.25091 0.69366 1.23489 0.99941 0.91001 0.90208 1.20016 0.95096 1.06624 1.03053 1.20344 0.97820 0.94974 0.91443 0.91150 0.93855 0.90957 0.89599 0.90090 0.93004 0.91148 0.92704 0.91709 0.96215 0.97126 0.79426 0.93911 0.74874 0.86080 0.84994 0.84751 0.85567 0.74458 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.14 2.51 2.57 44.99 0.12 2.63 16 3 H 0.06 1.42 7.58 -2.38 -0.02 1.40 16 4 C -0.12 -1.94 4.75 30.59 0.15 -1.80 16 5 C -0.10 -2.33 5.10 30.60 0.16 -2.17 16 6 C -0.11 -3.39 5.33 30.60 0.16 -3.23 16 7 C 0.15 5.98 6.26 86.38 0.54 6.52 16 8 N -0.75 -39.15 5.60 -343.47 -1.92 -41.08 16 9 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 11 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 12 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 13 Si 0.98 46.55 29.55 68.60 2.03 48.57 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 N -0.72 -10.41 4.53 -442.54 -2.00 -12.41 16 18 C 0.51 9.44 7.79 87.66 0.68 10.12 16 19 O -0.58 -16.53 15.70 -3.03 -0.05 -16.58 16 20 C -0.09 -1.07 5.78 29.10 0.17 -0.90 16 21 C -0.12 -2.11 4.33 -20.11 -0.09 -2.19 16 22 C -0.06 -1.17 9.51 22.02 0.21 -0.96 16 23 C -0.14 -3.16 10.08 22.38 0.23 -2.94 16 24 C 0.08 1.91 7.49 42.16 0.32 2.23 16 25 N -0.36 -8.13 12.70 -48.70 -0.62 -8.75 16 26 N -0.42 -5.01 7.18 -56.34 -0.40 -5.41 16 27 H 0.46 1.68 8.96 -213.42 -1.91 -0.23 16 28 C 0.11 1.08 12.07 84.37 1.02 2.10 16 29 C -0.24 -4.27 6.33 -20.23 -0.13 -4.40 16 30 C -0.03 -0.41 9.66 22.38 0.22 -0.19 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.45 7.75 -2.39 -0.02 1.43 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.37 20.53 7.67 -92.71 -0.71 19.82 16 43 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.41 3.72 8.60 -92.71 -0.80 2.93 16 45 H 0.12 1.01 8.07 -2.39 -0.02 0.99 16 46 H 0.13 0.70 8.05 -2.39 -0.02 0.68 16 47 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 48 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 49 H 0.24 -0.42 8.06 -2.91 -0.02 -0.45 16 50 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -85.22 418.17 0.58 -84.64 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -2.46 Total: 24.99 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 5.73 Total: -14.47 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -4.67 Total: -127.15 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.05 Total: -16.58 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -85.22 0.58 -84.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171765361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.651 kcal (2) G-P(sol) polarization free energy of solvation -85.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds