Wall clock time and date at job start Wed Apr 1 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47737 * 2 1 4 4 C 1.53002 * 109.46854 * 240.00426 * 2 1 3 5 5 C 1.52999 * 109.47212 * 175.00329 * 4 2 1 6 6 C 1.53002 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46983 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47004 * 179.97438 * 7 6 5 9 9 C 1.36933 * 120.00037 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00107 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00294 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00495 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99601 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47376 * 90.00309 * 13 11 9 15 15 H 1.48503 * 109.47088 * 210.00328 * 13 11 9 16 16 H 1.48501 * 109.47310 * 329.99839 * 13 11 9 17 17 N 1.46503 * 109.47310 * 120.00508 * 2 1 3 18 18 C 1.34772 * 119.99979 * 274.99819 * 17 2 1 19 19 O 1.21281 * 120.00094 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00107 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.47382 * 180.02562 * 20 18 17 22 22 C 1.34463 * 126.51200 * 264.97911 * 21 20 18 23 23 N 1.36672 * 109.96310 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.04507 * 179.97438 * 23 22 21 25 25 C 1.37542 * 109.90229 * 0.24165 * 23 22 21 26 26 C 1.38866 * 134.46276 * 180.45814 * 25 23 22 27 27 N 1.31733 * 120.27465 * 179.58988 * 26 25 23 28 28 C 1.32295 * 122.57238 * 359.73464 * 27 26 25 29 29 C 1.36643 * 121.32397 * 0.02562 * 28 27 26 30 30 C 1.39840 * 118.69359 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.46898 * 299.99759 * 1 2 3 32 32 H 1.08999 * 109.47303 * 59.99099 * 1 2 3 33 33 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47103 * 295.00135 * 4 2 1 35 35 H 1.09004 * 109.47185 * 55.00075 * 4 2 1 36 36 H 1.09005 * 109.46698 * 299.99580 * 5 4 2 37 37 H 1.08995 * 109.47318 * 59.99579 * 5 4 2 38 38 H 1.08998 * 109.47103 * 299.99806 * 6 5 4 39 39 H 1.09000 * 109.46985 * 60.00217 * 6 5 4 40 40 H 1.08998 * 109.47430 * 300.00081 * 7 6 5 41 41 H 1.09004 * 109.46979 * 60.00095 * 7 6 5 42 42 H 0.96998 * 119.99664 * 0.02562 * 8 7 6 43 43 H 0.96996 * 119.99924 * 179.97438 * 12 11 9 44 44 H 0.97000 * 119.99637 * 94.99428 * 17 2 1 45 45 H 1.08998 * 109.47442 * 59.99803 * 20 18 17 46 46 H 1.09003 * 109.47087 * 300.00007 * 20 18 17 47 47 H 1.07994 * 125.01688 * 359.97438 * 22 21 20 48 48 H 1.07999 * 119.85910 * 359.32469 * 26 25 23 49 49 H 1.07995 * 119.34300 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.65315 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3351 -2.5628 7 6 5.5995 -1.2266 -2.6276 8 7 6.0879 -1.9182 -3.8232 9 6 7.4299 -1.9548 -4.0928 10 1 8.1284 -1.4742 -3.4238 11 6 7.8927 -2.6096 -5.2259 12 7 9.1827 -2.6453 -5.4848 13 14 6.6846 -3.4415 -6.3826 14 1 6.2490 -2.4749 -7.4224 15 1 7.3416 -4.6043 -7.0319 16 1 5.5028 -3.9069 -5.6131 17 7 2.0183 -0.6907 1.1961 18 6 2.1471 -0.0185 2.3571 19 8 1.8591 1.1584 2.4116 20 6 2.6489 -0.7291 3.5876 21 6 2.6992 0.2390 4.7415 22 6 3.7695 0.9442 5.1481 23 7 3.4371 1.7174 6.2250 24 1 4.0444 2.3121 6.6923 25 6 2.1153 1.5223 6.5513 26 6 1.2670 2.0374 7.5226 27 7 0.0093 1.6496 7.5793 28 6 -0.5047 0.7733 6.7319 29 6 0.2521 0.2162 5.7399 30 6 1.5954 0.5889 5.6307 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7515 -1.7714 -1.2058 35 1 1.6052 -0.2616 -2.1370 36 1 3.8531 0.4370 -1.3574 37 1 3.9993 -1.0729 -0.4262 38 1 3.7863 -2.3853 -2.5188 39 1 3.6401 -0.8758 -3.4507 40 1 5.8876 -0.1763 -2.6718 41 1 6.0344 -1.6856 -1.7397 42 1 5.4606 -2.3502 -4.4238 43 1 9.5060 -3.1032 -6.2764 44 1 2.2490 -1.6319 1.1524 45 1 3.6480 -1.1217 3.3985 46 1 1.9760 -1.5509 3.8324 47 1 4.7472 0.9054 4.6912 48 1 1.6410 2.7557 8.2371 49 1 -1.5431 0.4919 6.8266 50 1 -0.1788 -0.4978 5.0538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174889719.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:31 Heat of formation + Delta-G solvation = 23.875446 kcal Electronic energy + Delta-G solvation = -28515.719435 eV Core-core repulsion = 24542.938112 eV Total energy + Delta-G solvation = -3972.781322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.94561 -39.94797 -38.37132 -37.05356 -35.43060 -33.62554 -33.28274 -31.88091 -31.17186 -30.48191 -30.23960 -27.77823 -27.60073 -24.26818 -23.97174 -22.84771 -22.25984 -21.35713 -20.92819 -20.68027 -19.81775 -18.56331 -17.53578 -17.31826 -17.15658 -16.41051 -16.08157 -15.44889 -15.12870 -15.08853 -14.99297 -14.65709 -14.41430 -14.17843 -14.01832 -13.63079 -13.53506 -13.25645 -13.07123 -12.98261 -12.86297 -12.70107 -12.40898 -12.06375 -11.92231 -11.88639 -11.64279 -11.47093 -11.16444 -10.90281 -10.84979 -10.43196 -10.39462 -10.34264 -10.11295 -9.94467 -9.89386 -9.59455 -9.22675 -8.95866 -8.89491 -8.19452 -7.22779 -5.77235 -3.12443 0.63380 1.17924 2.17056 2.51010 2.64022 3.11162 3.36390 3.39268 3.44219 3.63994 4.15628 4.27009 4.36002 4.45334 4.48982 4.58666 4.70603 4.71747 4.86616 4.89567 4.91604 5.09212 5.15834 5.18849 5.25965 5.26338 5.31671 5.36020 5.48157 5.54642 5.55020 5.58324 5.65398 5.83407 5.86313 5.88059 6.03197 6.06292 6.14087 6.14745 6.16719 6.21708 6.34355 6.37828 6.58301 6.76151 6.80233 7.01446 7.34058 7.75051 7.99681 8.09876 8.42120 9.21668 9.94187 10.14479 11.41312 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.001669 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.646038 B =16770.277336 C =17820.649113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.726 5.726 18 C 0.513 3.487 19 O -0.532 6.532 20 C -0.067 4.067 21 C -0.157 4.157 22 C 0.084 3.916 23 N -0.581 5.581 24 H 0.420 0.580 25 C 0.037 3.963 26 C 0.112 3.888 27 N -0.471 5.471 28 C 0.052 3.948 29 C -0.118 4.118 30 C -0.056 4.056 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.400 0.600 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.176 0.824 48 H 0.152 0.848 49 H 0.153 0.847 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.392 5.464 25.794 32.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.378 5.378 18 C 0.298 3.702 19 O -0.407 6.407 20 C -0.107 4.107 21 C -0.165 4.165 22 C -0.046 4.046 23 N -0.183 5.183 24 H 0.258 0.742 25 C -0.073 4.073 26 C -0.056 4.056 27 N -0.180 5.180 28 C -0.098 4.098 29 C -0.139 4.139 30 C -0.067 4.067 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.234 0.766 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.193 0.807 48 H 0.170 0.830 49 H 0.170 0.830 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.880 6.744 26.521 33.824 hybrid contribution 0.273 -1.198 -1.542 1.972 sum -19.607 5.546 24.979 32.236 Atomic orbital electron populations 1.22170 0.95525 1.01976 1.02434 1.20997 0.93646 0.97690 0.83943 0.89472 1.21939 0.96780 1.00916 0.96871 1.21502 0.94032 1.01150 0.98453 1.21784 0.97259 1.00285 0.97452 1.20630 0.90787 0.95673 0.89982 1.42737 1.05261 1.66049 1.26312 1.19086 0.82341 1.29285 1.06745 0.89290 1.24687 0.95633 1.00720 0.98274 1.69704 1.11719 1.48305 1.28596 0.86517 0.80876 0.79456 0.81494 1.21089 1.21715 1.20370 1.46138 1.67870 1.14104 1.09731 1.20653 0.77658 0.87514 0.84332 1.90718 1.49193 1.15993 1.84835 1.19953 1.03831 0.97049 0.89873 1.19441 0.92184 1.05027 0.99808 1.21783 0.99919 0.93282 0.89590 1.41595 1.09029 1.39411 1.28314 0.74227 1.19360 0.85956 1.01581 1.00354 1.21796 0.88313 0.99370 0.96148 1.67554 1.12123 1.12750 1.25544 1.22035 1.00203 0.95095 0.92422 1.21206 0.92276 1.01022 0.99349 1.19188 0.93921 0.97785 0.95843 0.92294 0.91677 0.92544 0.91388 0.90362 0.91862 0.91915 0.92174 0.92131 0.95728 0.95818 0.80737 0.93081 0.76575 0.87777 0.88178 0.80656 0.83034 0.82957 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.14 1.26 2.57 -67.93 -0.17 1.09 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 4 C -0.13 -1.10 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.24 5.10 -26.73 -0.14 -1.37 16 6 C -0.13 -1.85 5.33 -26.73 -0.14 -1.99 16 7 C 0.16 2.99 6.26 -4.04 -0.03 2.97 16 8 N -0.76 -18.26 5.41 -59.91 -0.32 -18.58 16 9 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 10 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 11 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 12 N -0.94 -29.55 13.97 55.49 0.78 -28.78 16 13 Si 0.89 22.16 27.73 -169.99 -4.71 17.45 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 17 N -0.73 -5.69 4.53 -53.81 -0.24 -5.94 16 18 C 0.51 4.92 7.79 -10.99 -0.09 4.84 16 19 O -0.53 -7.45 15.70 5.56 0.09 -7.36 16 20 C -0.07 -0.45 6.23 -29.04 -0.18 -0.63 16 21 C -0.16 -1.37 4.80 -102.85 -0.49 -1.86 16 22 C 0.08 0.59 11.74 -16.73 -0.20 0.39 16 23 N -0.58 -3.82 6.06 -10.64 -0.06 -3.88 16 24 H 0.42 1.37 8.96 -40.82 -0.37 1.01 16 25 C 0.04 0.34 7.33 -84.01 -0.62 -0.28 16 26 C 0.11 1.00 11.25 -17.36 -0.20 0.80 16 27 N -0.47 -4.93 10.32 -13.41 -0.14 -5.06 16 28 C 0.05 0.48 11.11 -17.93 -0.20 0.28 16 29 C -0.12 -1.10 10.13 -39.56 -0.40 -1.50 16 30 C -0.06 -0.56 6.42 -105.13 -0.67 -1.24 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.36 8.40 5.53 -40.82 -0.23 8.18 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.40 2.22 8.60 -40.82 -0.35 1.87 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 48 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 50 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 415.43 15.07 6.26 6.26 Total: -1.00 -38.03 415.43 -10.01 -48.04 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.09 Total: 5.82 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.55 Total: -7.96 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.00 Total: -62.24 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -38.03 -10.01 -48.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174889719.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.911 kcal (2) G-P(sol) polarization free energy of solvation -38.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds