Wall clock time and date at job start Wed Apr 1 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47737 * 2 1 4 4 C 1.53002 * 109.46854 * 240.00426 * 2 1 3 5 5 C 1.52999 * 109.47212 * 175.00329 * 4 2 1 6 6 C 1.53002 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46983 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47004 * 179.97438 * 7 6 5 9 9 C 1.36933 * 120.00037 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00107 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00294 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00495 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99601 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47376 * 90.00309 * 13 11 9 15 15 H 1.48503 * 109.47088 * 210.00328 * 13 11 9 16 16 H 1.48501 * 109.47310 * 329.99839 * 13 11 9 17 17 N 1.46503 * 109.47310 * 120.00508 * 2 1 3 18 18 C 1.34772 * 119.99979 * 274.99819 * 17 2 1 19 19 O 1.21281 * 120.00094 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00107 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.47382 * 180.02562 * 20 18 17 22 22 C 1.34463 * 126.51200 * 264.97911 * 21 20 18 23 23 N 1.36672 * 109.96310 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.04507 * 179.97438 * 23 22 21 25 25 C 1.37542 * 109.90229 * 0.24165 * 23 22 21 26 26 C 1.38866 * 134.46276 * 180.45814 * 25 23 22 27 27 N 1.31733 * 120.27465 * 179.58988 * 26 25 23 28 28 C 1.32295 * 122.57238 * 359.73464 * 27 26 25 29 29 C 1.36643 * 121.32397 * 0.02562 * 28 27 26 30 30 C 1.39840 * 118.69359 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.46898 * 299.99759 * 1 2 3 32 32 H 1.08999 * 109.47303 * 59.99099 * 1 2 3 33 33 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47103 * 295.00135 * 4 2 1 35 35 H 1.09004 * 109.47185 * 55.00075 * 4 2 1 36 36 H 1.09005 * 109.46698 * 299.99580 * 5 4 2 37 37 H 1.08995 * 109.47318 * 59.99579 * 5 4 2 38 38 H 1.08998 * 109.47103 * 299.99806 * 6 5 4 39 39 H 1.09000 * 109.46985 * 60.00217 * 6 5 4 40 40 H 1.08998 * 109.47430 * 300.00081 * 7 6 5 41 41 H 1.09004 * 109.46979 * 60.00095 * 7 6 5 42 42 H 0.96998 * 119.99664 * 0.02562 * 8 7 6 43 43 H 0.96996 * 119.99924 * 179.97438 * 12 11 9 44 44 H 0.97000 * 119.99637 * 94.99428 * 17 2 1 45 45 H 1.08998 * 109.47442 * 59.99803 * 20 18 17 46 46 H 1.09003 * 109.47087 * 300.00007 * 20 18 17 47 47 H 1.07994 * 125.01688 * 359.97438 * 22 21 20 48 48 H 1.07999 * 119.85910 * 359.32469 * 26 25 23 49 49 H 1.07995 * 119.34300 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.65315 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3351 -2.5628 7 6 5.5995 -1.2266 -2.6276 8 7 6.0879 -1.9182 -3.8232 9 6 7.4299 -1.9548 -4.0928 10 1 8.1284 -1.4742 -3.4238 11 6 7.8927 -2.6096 -5.2259 12 7 9.1827 -2.6453 -5.4848 13 14 6.6846 -3.4415 -6.3826 14 1 6.2490 -2.4749 -7.4224 15 1 7.3416 -4.6043 -7.0319 16 1 5.5028 -3.9069 -5.6131 17 7 2.0183 -0.6907 1.1961 18 6 2.1471 -0.0185 2.3571 19 8 1.8591 1.1584 2.4116 20 6 2.6489 -0.7291 3.5876 21 6 2.6992 0.2390 4.7415 22 6 3.7695 0.9442 5.1481 23 7 3.4371 1.7174 6.2250 24 1 4.0444 2.3121 6.6923 25 6 2.1153 1.5223 6.5513 26 6 1.2670 2.0374 7.5226 27 7 0.0093 1.6496 7.5793 28 6 -0.5047 0.7733 6.7319 29 6 0.2521 0.2162 5.7399 30 6 1.5954 0.5889 5.6307 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7515 -1.7714 -1.2058 35 1 1.6052 -0.2616 -2.1370 36 1 3.8531 0.4370 -1.3574 37 1 3.9993 -1.0729 -0.4262 38 1 3.7863 -2.3853 -2.5188 39 1 3.6401 -0.8758 -3.4507 40 1 5.8876 -0.1763 -2.6718 41 1 6.0344 -1.6856 -1.7397 42 1 5.4606 -2.3502 -4.4238 43 1 9.5060 -3.1032 -6.2764 44 1 2.2490 -1.6319 1.1524 45 1 3.6480 -1.1217 3.3985 46 1 1.9760 -1.5509 3.8324 47 1 4.7472 0.9054 4.6912 48 1 1.6410 2.7557 8.2371 49 1 -1.5431 0.4919 6.8266 50 1 -0.1788 -0.4978 5.0538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174889719.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:30 Heat of formation + Delta-G solvation = -2.504845 kcal Electronic energy + Delta-G solvation = -28516.863370 eV Core-core repulsion = 24542.938112 eV Total energy + Delta-G solvation = -3973.925258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.52888 -40.68197 -38.99086 -38.03195 -36.88670 -34.72986 -34.22314 -33.20337 -32.29198 -31.39826 -30.85805 -29.03934 -28.17325 -25.75841 -24.59020 -23.62422 -23.46394 -22.46007 -22.05765 -21.43729 -20.41914 -19.60726 -19.13952 -18.01134 -17.76236 -17.13665 -16.71521 -16.62397 -16.31124 -15.97381 -15.83072 -15.70205 -15.59081 -15.04424 -14.87922 -14.76977 -14.59687 -14.33833 -14.10894 -13.92822 -13.64861 -13.56421 -13.39587 -13.02709 -12.94939 -12.91200 -12.64056 -12.48375 -12.39957 -12.22519 -12.05342 -11.86992 -11.74423 -11.47632 -11.40234 -11.07007 -10.96514 -10.69986 -10.56980 -9.95439 -9.58092 -9.29984 -8.78087 -8.03431 -5.37388 0.00607 0.51952 1.38241 1.42740 1.50330 1.58302 1.81332 2.13836 2.48851 2.48975 2.97600 3.27871 3.51925 3.57449 3.73764 3.78031 3.91258 3.95731 4.05060 4.11107 4.13189 4.20138 4.36699 4.41030 4.43315 4.58316 4.59645 4.62379 4.66236 4.69276 4.75789 4.81938 4.90361 4.95225 4.98412 5.00737 5.05341 5.17301 5.26290 5.27730 5.34329 5.47633 5.53307 5.54956 5.62943 5.69975 5.74798 5.97485 6.20935 6.59094 6.73295 7.07900 7.09169 7.44518 7.84509 8.04362 9.18125 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.001669 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.646038 B =16770.277336 C =17820.649113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.061 0.939 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.117 4.117 7 C 0.150 3.850 8 N -0.761 5.761 9 C -0.242 4.242 10 H 0.053 0.947 11 C -0.067 4.067 12 N -0.985 5.985 13 Si 0.961 3.039 14 H -0.278 1.278 15 H -0.294 1.294 16 H -0.247 1.247 17 N -0.715 5.715 18 C 0.511 3.489 19 O -0.582 6.582 20 C -0.060 4.060 21 C -0.183 4.183 22 C 0.087 3.913 23 N -0.570 5.570 24 H 0.435 0.565 25 C 0.021 3.979 26 C 0.106 3.894 27 N -0.498 5.498 28 C 0.038 3.962 29 C -0.130 4.130 30 C -0.082 4.082 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.023 0.977 42 H 0.367 0.633 43 H 0.258 0.742 44 H 0.414 0.586 45 H 0.131 0.869 46 H 0.118 0.882 47 H 0.205 0.795 48 H 0.176 0.824 49 H 0.170 0.830 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.010 4.092 25.639 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.154 4.154 5 C -0.144 4.144 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.407 5.407 9 C -0.373 4.373 10 H 0.071 0.929 11 C -0.258 4.258 12 N -0.635 5.635 13 Si 0.787 3.213 14 H -0.204 1.204 15 H -0.221 1.221 16 H -0.172 1.172 17 N -0.368 5.368 18 C 0.299 3.701 19 O -0.462 6.462 20 C -0.100 4.100 21 C -0.190 4.190 22 C -0.043 4.043 23 N -0.174 5.174 24 H 0.275 0.725 25 C -0.090 4.090 26 C -0.062 4.062 27 N -0.207 5.207 28 C -0.110 4.110 29 C -0.150 4.150 30 C -0.094 4.094 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.200 0.800 43 H 0.067 0.933 44 H 0.251 0.749 45 H 0.149 0.851 46 H 0.136 0.864 47 H 0.222 0.778 48 H 0.193 0.807 49 H 0.187 0.813 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.526 5.364 26.404 34.486 hybrid contribution 0.877 -0.681 -1.423 1.805 sum -20.649 4.682 24.981 32.747 Atomic orbital electron populations 1.22105 0.94908 1.02731 1.01758 1.20873 0.94048 0.96579 0.84528 0.92080 1.21834 0.94738 1.02045 0.96739 1.21421 0.95727 1.00087 0.97172 1.21671 0.93167 1.01502 0.99117 1.20861 0.94417 0.94373 0.87985 1.42761 1.03467 1.66506 1.27941 1.19077 0.84121 1.28119 1.05942 0.92926 1.25598 0.97676 1.02085 1.00451 1.69898 1.14273 1.49861 1.29475 0.85327 0.79063 0.77940 0.78956 1.20447 1.22111 1.17155 1.46068 1.67031 1.14702 1.09039 1.21176 0.76714 0.86967 0.85286 1.90700 1.51529 1.18294 1.85633 1.20006 1.05556 0.96700 0.87742 1.19773 0.92222 1.06373 1.00617 1.22328 1.00794 0.92118 0.89054 1.41638 1.08419 1.39225 1.28126 0.72501 1.19514 0.87035 1.01857 1.00550 1.22206 0.88024 0.99462 0.96492 1.67574 1.13028 1.13688 1.26429 1.22376 1.01155 0.95068 0.92433 1.21402 0.92420 1.01510 0.99696 1.19614 0.94663 0.98399 0.96700 0.94362 0.91013 0.90988 0.89478 0.89864 0.92946 0.91134 0.91034 0.91882 0.96687 0.95886 0.79979 0.93289 0.74873 0.85145 0.86412 0.77798 0.80671 0.81261 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 2 C 0.14 2.32 2.57 44.99 0.12 2.43 16 3 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.12 -1.63 4.75 30.59 0.15 -1.49 16 5 C -0.11 -2.03 5.10 30.59 0.16 -1.88 16 6 C -0.12 -2.97 5.33 30.60 0.16 -2.80 16 7 C 0.15 5.51 6.26 86.38 0.54 6.05 16 8 N -0.76 -35.54 5.41 -343.44 -1.86 -37.39 16 9 C -0.24 -13.99 10.47 84.03 0.88 -13.11 16 10 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 11 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 12 N -0.98 -63.38 13.97 21.65 0.30 -63.08 16 13 Si 0.96 44.97 27.73 68.60 1.90 46.87 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 16 H -0.25 -10.23 6.52 99.48 0.65 -9.59 16 17 N -0.72 -9.69 4.53 -442.54 -2.00 -11.70 16 18 C 0.51 9.17 7.79 87.66 0.68 9.86 16 19 O -0.58 -16.36 15.70 -3.03 -0.05 -16.41 16 20 C -0.06 -0.69 6.23 29.10 0.18 -0.51 16 21 C -0.18 -2.98 4.80 -18.72 -0.09 -3.07 16 22 C 0.09 1.09 11.74 83.07 0.98 2.07 16 23 N -0.57 -6.88 6.06 -187.59 -1.14 -8.02 16 24 H 0.43 2.25 8.96 -92.71 -0.83 1.42 16 25 C 0.02 0.37 7.33 39.08 0.29 0.66 16 26 C 0.11 1.88 11.25 84.86 0.95 2.84 16 27 N -0.50 -10.58 10.32 -196.34 -2.03 -12.60 16 28 C 0.04 0.73 11.11 84.25 0.94 1.67 16 29 C -0.13 -2.45 10.13 22.28 0.23 -2.23 16 30 C -0.08 -1.64 6.42 -20.19 -0.13 -1.77 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.25 7.75 -2.39 -0.02 1.23 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.57 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.37 16.03 5.53 -92.71 -0.51 15.52 16 43 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 44 H 0.41 3.24 8.60 -92.71 -0.80 2.45 16 45 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.21 1.19 8.06 -2.91 -0.02 1.16 16 48 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 49 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 50 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -84.90 415.43 1.07 -83.83 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -1.24 Total: 24.93 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 7.17 Total: -6.43 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -6.72 Total: -132.79 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.41 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Total: -84.90 1.07 -83.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174889719.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.324 kcal (2) G-P(sol) polarization free energy of solvation -84.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds