Wall clock time and date at job start Wed Apr 1 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00302 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00497 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46675 * 89.99720 * 13 11 9 15 15 H 1.48494 * 109.47198 * 209.99579 * 13 11 9 16 16 H 1.48497 * 109.47038 * 330.00110 * 13 11 9 17 17 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 C 1.50701 * 109.47355 * 180.02562 * 20 18 17 22 22 C 1.34456 * 126.51295 * 264.68750 * 21 20 18 23 23 N 1.36669 * 109.96236 * 179.83264 * 22 21 20 24 24 H 0.97001 * 125.04953 * 180.16710 * 23 22 21 25 25 C 1.37552 * 109.90227 * 0.44538 * 23 22 21 26 26 C 1.38868 * 134.46866 * 179.69618 * 25 23 22 27 27 N 1.31740 * 120.27315 * 180.02562 * 26 25 23 28 28 C 1.32299 * 122.57039 * 359.97438 * 27 26 25 29 29 C 1.36642 * 121.32273 * 0.02562 * 28 27 26 30 30 C 1.39840 * 118.69789 * 0.02562 * 29 28 27 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 34 34 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 35 35 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 36 36 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 37 37 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 38 38 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 39 39 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 40 40 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 41 41 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 42 42 H 0.97005 * 120.00133 * 359.97438 * 8 7 6 43 43 H 0.96996 * 120.00098 * 179.97438 * 12 11 9 44 44 H 0.97001 * 120.00384 * 265.00562 * 17 2 1 45 45 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 46 46 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 47 47 H 1.07996 * 125.02141 * 359.97438 * 22 21 20 48 48 H 1.07993 * 119.86165 * 0.06495 * 26 25 23 49 49 H 1.07999 * 119.33643 * 179.97438 * 28 27 26 50 50 H 1.08005 * 120.64933 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0880 -1.9162 3.8240 9 6 7.4299 -1.9518 4.0943 10 1 8.1283 -1.4710 3.4253 11 6 7.8926 -2.6057 5.2279 12 7 7.0414 -3.1912 6.0434 13 14 9.7233 -2.6548 5.5961 14 1 10.0929 -1.4799 6.4259 15 1 10.0467 -3.9027 6.3331 16 1 10.4855 -2.6204 4.3222 17 7 2.0184 -0.6906 -1.1962 18 6 2.1417 -0.0196 -2.3585 19 8 1.8533 1.1572 -2.4129 20 6 2.6382 -0.7314 -3.5905 21 6 2.6842 0.2358 -4.7453 22 6 1.7306 0.4168 -5.6757 23 7 2.1214 1.3800 -6.5631 24 1 1.5980 1.6847 -7.3208 25 6 3.3698 1.8488 -6.2257 26 6 4.2306 2.7971 -6.7624 27 7 5.3971 3.0309 -6.1967 28 6 5.8036 2.3916 -5.1121 29 6 5.0247 1.4417 -4.5136 30 6 3.7754 1.1496 -5.0700 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.9994 -1.0728 0.4259 37 1 3.8532 0.4369 1.3573 38 1 3.6402 -0.8742 3.4508 39 1 3.7865 -2.3844 2.5200 40 1 6.0345 -1.6853 1.7404 41 1 5.8876 -0.1753 2.6713 42 1 5.4606 -2.3478 4.4251 43 1 7.3647 -3.6484 6.8354 44 1 2.2490 -1.6318 -1.1527 45 1 3.6381 -1.1236 -3.4054 46 1 1.9643 -1.5536 -3.8314 47 1 0.7932 -0.1181 -5.7147 48 1 3.9423 3.3456 -7.6469 49 1 6.7708 2.6245 -4.6918 50 1 5.3672 0.9267 -3.6282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174889720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:34 Heat of formation + Delta-G solvation = -5.469050 kcal Electronic energy + Delta-G solvation = -28639.080824 eV Core-core repulsion = 24665.027029 eV Total energy + Delta-G solvation = -3974.053795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.52437 -40.67732 -38.99174 -37.98777 -36.78091 -34.72852 -34.21592 -32.98507 -32.14251 -31.31409 -30.85582 -28.80568 -28.16309 -25.91509 -24.59360 -23.81574 -23.47874 -22.42020 -21.99972 -21.42568 -20.40339 -19.15793 -19.09984 -18.00561 -17.79135 -17.09777 -16.70921 -16.67907 -16.24059 -16.10947 -15.75170 -15.55135 -15.39129 -15.28059 -14.99969 -14.72396 -14.54553 -14.27215 -14.06138 -13.76399 -13.65724 -13.53169 -13.19682 -12.97633 -12.88551 -12.83315 -12.62888 -12.45243 -12.41289 -12.22602 -12.14849 -11.87465 -11.78419 -11.47400 -11.36622 -11.07106 -10.93818 -10.69668 -10.57470 -9.95000 -9.57357 -9.01294 -8.77630 -7.96498 -5.25675 0.01086 0.51153 1.46738 1.48883 1.57460 1.59374 1.81848 2.14483 2.49336 2.55429 2.96973 3.36686 3.57335 3.63098 3.74393 3.78409 3.95076 4.05116 4.07838 4.10937 4.15569 4.22412 4.37933 4.40671 4.46434 4.58376 4.61194 4.63736 4.66917 4.69312 4.76146 4.83412 4.89852 4.95817 4.99656 5.01498 5.04714 5.17315 5.26570 5.28738 5.35185 5.46547 5.47772 5.54019 5.54444 5.63097 5.69822 5.97276 6.26536 6.62030 6.73675 7.08804 7.32130 7.44759 8.08917 8.32338 9.27052 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.001949 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.587049 B =14364.730412 C =16467.002666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.059 0.941 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.249 4.249 10 H 0.073 0.927 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.269 1.269 17 N -0.716 5.716 18 C 0.511 3.489 19 O -0.582 6.582 20 C -0.060 4.060 21 C -0.185 4.185 22 C 0.094 3.906 23 N -0.568 5.568 24 H 0.436 0.564 25 C 0.022 3.978 26 C 0.107 3.893 27 N -0.498 5.498 28 C 0.037 3.963 29 C -0.135 4.135 30 C -0.084 4.084 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.011 0.989 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.414 0.586 45 H 0.110 0.890 46 H 0.138 0.862 47 H 0.213 0.787 48 H 0.179 0.821 49 H 0.165 0.835 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.413 4.819 -28.982 34.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.077 0.923 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.381 4.381 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.214 1.214 15 H -0.219 1.219 16 H -0.194 1.194 17 N -0.369 5.369 18 C 0.298 3.702 19 O -0.461 6.461 20 C -0.100 4.100 21 C -0.192 4.192 22 C -0.036 4.036 23 N -0.172 5.172 24 H 0.277 0.723 25 C -0.088 4.088 26 C -0.061 4.061 27 N -0.208 5.208 28 C -0.111 4.111 29 C -0.155 4.155 30 C -0.095 4.095 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.029 0.971 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.128 0.872 46 H 0.156 0.844 47 H 0.230 0.770 48 H 0.196 0.804 49 H 0.182 0.818 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.902 6.349 -29.469 35.060 hybrid contribution 0.387 -0.837 1.051 1.398 sum -17.515 5.512 -28.418 33.834 Atomic orbital electron populations 1.22090 0.94485 1.02842 1.01908 1.20860 0.94340 0.96392 0.84401 0.92298 1.21833 0.94615 1.02053 0.96892 1.21413 0.95914 0.99887 0.96991 1.21601 0.93678 1.01014 0.98702 1.20861 0.94309 0.94161 0.88513 1.42634 1.04531 1.65358 1.26654 1.19651 0.85352 1.27679 1.05423 0.90902 1.25619 1.02296 1.01238 0.97834 1.69815 1.34676 1.41915 1.15557 0.85107 0.79833 0.76715 0.77919 1.21389 1.21852 1.19423 1.46074 1.67083 1.14746 1.08956 1.21198 0.76621 0.86973 0.85366 1.90697 1.51514 1.18126 1.85782 1.20003 1.05017 0.96955 0.88001 1.19773 0.94958 1.03845 1.00660 1.22345 0.99695 0.91900 0.89678 1.41616 1.14223 1.33783 1.27568 0.72324 1.19462 0.89501 1.01051 0.98803 1.22251 0.88568 0.95067 1.00176 1.67575 1.15789 1.26169 1.11219 1.22308 1.00961 0.94755 0.93089 1.21395 0.93655 0.99403 1.01031 1.19628 0.95512 0.98435 0.95963 0.90880 0.91169 0.93840 0.90063 0.89531 0.91258 0.93110 0.92660 0.91670 0.96259 0.97135 0.79402 0.93905 0.74916 0.87209 0.84400 0.77008 0.80374 0.81827 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.48 71.98 0.68 -1.69 16 2 C 0.14 2.55 2.57 44.99 0.12 2.66 16 3 H 0.06 1.40 7.58 -2.39 -0.02 1.38 16 4 C -0.12 -1.97 4.75 30.60 0.15 -1.82 16 5 C -0.10 -2.37 5.10 30.60 0.16 -2.21 16 6 C -0.11 -3.41 5.33 30.60 0.16 -3.24 16 7 C 0.15 6.02 6.26 86.38 0.54 6.56 16 8 N -0.75 -39.30 5.60 -343.46 -1.92 -41.22 16 9 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 10 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 12 N -0.97 -59.99 13.06 21.65 0.28 -59.70 16 13 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 14 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 N -0.72 -10.54 4.53 -442.53 -2.00 -12.55 16 18 C 0.51 9.51 7.78 87.66 0.68 10.19 16 19 O -0.58 -16.64 15.70 -3.04 -0.05 -16.69 16 20 C -0.06 -0.71 6.23 29.10 0.18 -0.53 16 21 C -0.19 -3.02 4.80 -18.72 -0.09 -3.11 16 22 C 0.09 1.00 11.74 83.07 0.97 1.98 16 23 N -0.57 -6.17 6.06 -187.59 -1.14 -7.30 16 24 H 0.44 1.47 8.96 -92.71 -0.83 0.64 16 25 C 0.02 0.41 7.33 39.08 0.29 0.69 16 26 C 0.11 2.03 11.25 84.86 0.95 2.98 16 27 N -0.50 -11.83 10.32 -196.33 -2.03 -13.86 16 28 C 0.04 0.86 11.11 84.25 0.94 1.80 16 29 C -0.13 -3.06 10.12 22.28 0.23 -2.84 16 30 C -0.08 -1.82 6.42 -20.20 -0.13 -1.95 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.47 7.75 -2.39 -0.02 1.45 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.37 20.60 7.67 -92.70 -0.71 19.88 16 43 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.41 3.81 8.60 -92.71 -0.80 3.01 16 45 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 48 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 49 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 50 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -83.27 418.55 0.93 -82.34 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -1.38 Total: 28.31 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 7.13 Total: -8.11 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -6.81 Total: -134.63 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.05 Total: -16.69 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -83.27 0.93 -82.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174889720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.870 kcal (2) G-P(sol) polarization free energy of solvation -83.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds