Wall clock time and date at job start Wed Apr 1 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47270 * 2 1 4 4 C 1.53000 * 109.47554 * 240.00050 * 2 1 3 5 5 C 1.52995 * 109.47415 * 175.00098 * 4 2 1 6 6 C 1.52997 * 109.47087 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47085 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.47263 * 179.97438 * 7 6 5 9 9 C 1.36937 * 120.00098 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99922 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99935 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99742 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00038 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47033 * 90.00288 * 13 11 9 15 15 H 1.48501 * 109.47216 * 209.99872 * 13 11 9 16 16 H 1.48504 * 109.47100 * 330.00315 * 13 11 9 17 17 N 1.46501 * 109.46944 * 119.99702 * 2 1 3 18 18 C 1.34774 * 120.00092 * 274.99844 * 17 2 1 19 19 O 1.21732 * 119.99841 * 5.22461 * 18 17 2 20 20 C 1.46422 * 120.00344 * 185.21859 * 18 17 2 21 21 C 1.40114 * 126.85592 * 265.96476 * 20 18 17 22 22 C 1.40059 * 136.36939 * 359.97438 * 21 20 18 23 23 C 1.36073 * 119.47099 * 179.97438 * 22 21 20 24 24 C 1.39490 * 121.56771 * 0.03340 * 23 22 21 25 25 C 1.35820 * 121.84047 * 359.97438 * 24 23 22 26 26 C 1.40932 * 119.54390 * 359.97438 * 25 24 23 27 27 N 1.32147 * 135.41864 * 180.02562 * 26 25 24 28 28 N 1.28448 * 111.38919 * 180.02562 * 27 26 25 29 29 C 1.46500 * 124.15321 * 179.97438 * 28 27 26 30 30 H 1.09006 * 109.46839 * 60.00391 * 1 2 3 31 31 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47193 * 300.00293 * 1 2 3 33 33 H 1.09002 * 109.46920 * 295.00040 * 4 2 1 34 34 H 1.08996 * 109.47224 * 54.99469 * 4 2 1 35 35 H 1.09002 * 109.47029 * 299.99875 * 5 4 2 36 36 H 1.09006 * 109.46908 * 59.99536 * 5 4 2 37 37 H 1.08996 * 109.47491 * 299.99600 * 6 5 4 38 38 H 1.08996 * 109.47434 * 60.00074 * 6 5 4 39 39 H 1.09002 * 109.47153 * 300.00100 * 7 6 5 40 40 H 1.09006 * 109.46786 * 59.99762 * 7 6 5 41 41 H 0.97001 * 120.00156 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00047 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00023 * 95.00622 * 17 2 1 44 44 H 1.08002 * 120.26289 * 0.05448 * 22 21 20 45 45 H 1.08001 * 119.21862 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.07844 * 180.26154 * 24 23 22 47 47 H 1.08001 * 120.22367 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.46846 * 85.44067 * 29 28 27 49 49 H 1.08998 * 109.46840 * 205.43545 * 29 28 27 50 50 H 1.08998 * 109.47612 * 325.44366 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3350 -2.5625 7 6 5.5998 -1.2265 -2.6272 8 7 6.0882 -1.9181 -3.8227 9 6 7.4303 -1.9547 -4.0922 10 1 8.1286 -1.4733 -3.4237 11 6 7.8931 -2.6096 -5.2253 12 7 9.1831 -2.6443 -5.4846 13 14 6.6852 -3.4416 -6.3820 14 1 6.2497 -2.4750 -7.4219 15 1 7.3424 -4.6044 -7.0312 16 1 5.5034 -3.9069 -5.6125 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.7688 1.1361 2.4371 20 6 2.7416 -0.6761 3.5223 21 6 2.0606 -1.3414 4.5503 22 6 0.7253 -1.6236 4.8648 23 6 0.4374 -2.3237 5.9955 24 6 1.4423 -2.7693 6.8542 25 6 2.7557 -2.5283 6.6062 26 6 3.1244 -1.8094 5.4515 27 7 4.2641 -1.4086 4.9162 28 7 4.0671 -0.7649 3.8222 29 6 5.1368 -0.1954 2.9990 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7517 -1.7715 -1.2056 34 1 1.6055 -0.2618 -2.1369 35 1 3.8532 0.4370 -1.3573 36 1 3.9995 -1.0727 -0.4258 37 1 3.7867 -2.3853 -2.5184 38 1 3.6404 -0.8760 -3.4504 39 1 5.8877 -0.1762 -2.6715 40 1 6.0347 -1.6854 -1.7392 41 1 5.4611 -2.3509 -4.4230 42 1 9.5065 -3.1016 -6.2765 43 1 2.2490 -1.6317 1.1527 44 1 -0.0694 -1.2893 4.2143 45 1 -0.5937 -2.5395 6.2338 46 1 1.1685 -3.3254 7.7386 47 1 3.5123 -2.8853 7.2893 48 1 5.5189 -0.9585 2.3210 49 1 4.7439 0.6407 2.4205 50 1 5.9433 0.1553 3.6429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176006901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:23 Heat of formation + Delta-G solvation = 60.147373 kcal Electronic energy + Delta-G solvation = -29315.465548 eV Core-core repulsion = 25344.257094 eV Total energy + Delta-G solvation = -3971.208454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.81558 -40.04269 -38.03374 -37.19154 -35.53212 -33.50976 -33.14775 -32.44164 -31.61331 -30.73629 -29.63179 -27.86385 -27.84480 -24.67370 -23.95058 -23.02151 -22.61491 -21.79345 -21.07122 -20.90570 -20.19289 -18.35833 -17.81211 -17.54857 -17.06211 -16.67136 -16.36685 -15.45948 -15.26510 -15.03606 -14.66593 -14.46203 -14.41463 -14.21772 -13.90122 -13.66920 -13.61087 -13.37595 -13.31194 -13.15967 -12.77756 -12.54761 -12.19907 -12.07107 -12.04323 -12.01155 -11.77669 -11.58147 -11.27081 -10.98990 -10.91329 -10.65939 -10.63122 -10.51572 -10.44129 -10.39224 -10.15445 -9.63117 -9.51603 -8.99125 -8.92950 -8.07712 -7.26663 -5.80144 -3.15783 0.21915 1.32096 1.59698 2.03700 2.25518 2.75765 3.34045 3.36693 3.42148 3.50484 3.75074 4.05244 4.35309 4.51965 4.55874 4.59501 4.67293 4.68752 4.74278 4.77881 4.83963 4.98711 5.03682 5.07385 5.19528 5.19570 5.23540 5.37791 5.39610 5.44552 5.50553 5.55459 5.66555 5.69973 5.77605 5.92539 5.97096 5.98961 6.03161 6.07387 6.10634 6.14245 6.24553 6.24739 6.26842 6.58651 6.68749 6.73212 6.98170 7.57721 7.65034 7.96030 8.39040 9.18190 9.90680 10.10548 11.38295 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.002127 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.442288 B =13157.879354 C =14211.084269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.157 3.843 8 N -0.758 5.758 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.278 1.278 17 N -0.707 5.707 18 C 0.597 3.403 19 O -0.517 6.517 20 C -0.029 4.029 21 C -0.125 4.125 22 C -0.066 4.066 23 C -0.126 4.126 24 C -0.102 4.102 25 C -0.074 4.074 26 C 0.057 3.943 27 N -0.282 5.282 28 N -0.212 5.212 29 C 0.071 3.929 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.023 0.977 41 H 0.360 0.640 42 H 0.260 0.740 43 H 0.405 0.595 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.843 2.664 22.441 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.168 4.168 7 C 0.030 3.970 8 N -0.404 5.404 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.582 5.582 13 Si 0.717 3.283 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.359 5.359 18 C 0.379 3.621 19 O -0.391 6.391 20 C -0.165 4.165 21 C -0.134 4.134 22 C -0.086 4.086 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.095 4.095 26 C -0.088 4.088 27 N -0.119 5.119 28 N 0.004 4.996 29 C -0.068 4.068 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.240 0.760 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.506 3.619 22.559 30.041 hybrid contribution -1.298 -1.086 -1.108 2.023 sum -20.804 2.532 21.451 29.989 Atomic orbital electron populations 1.22187 0.94922 1.02376 1.02831 1.21168 0.94268 0.97568 0.83279 0.89042 1.21964 0.96818 1.01147 0.96684 1.21526 0.94010 1.01236 0.98523 1.21783 0.97345 1.00337 0.97363 1.20618 0.90687 0.95681 0.90028 1.42732 1.05307 1.66009 1.26303 1.19067 0.82285 1.29384 1.06804 0.89299 1.24701 0.95657 1.00684 0.98298 1.69704 1.11722 1.48225 1.28566 0.86514 0.80848 0.79469 0.81483 1.21049 1.21688 1.20384 1.46166 1.66350 1.14362 1.09057 1.16711 0.78752 0.85365 0.81226 1.90898 1.48563 1.16592 1.83012 1.20958 0.85380 1.09781 1.00359 1.19346 0.95386 1.03348 0.95281 1.20039 0.93003 0.98133 0.97412 1.20669 0.99519 0.99543 0.94820 1.20627 0.92094 0.99958 0.99722 1.19919 0.96494 0.98700 0.94393 1.20611 0.88218 1.02206 0.97738 1.73482 1.24724 1.14583 0.99104 1.45772 1.05123 1.33476 1.15182 1.22534 0.89011 1.00355 0.94930 0.91253 0.92281 0.91954 0.91154 0.89834 0.91649 0.92193 0.92128 0.91965 0.95705 0.95941 0.80711 0.93036 0.75996 0.85977 0.85703 0.85404 0.85178 0.87945 0.88082 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 2 C 0.14 1.12 2.54 -67.93 -0.17 0.94 16 3 H 0.09 0.84 7.66 -51.93 -0.40 0.45 16 4 C -0.13 -0.99 4.75 -26.73 -0.13 -1.11 16 5 C -0.11 -1.13 5.10 -26.73 -0.14 -1.27 16 6 C -0.13 -1.76 5.33 -26.73 -0.14 -1.90 16 7 C 0.16 2.89 6.26 -4.04 -0.03 2.87 16 8 N -0.76 -17.93 5.41 -59.91 -0.32 -18.26 16 9 C -0.25 -6.98 10.47 -15.06 -0.16 -7.13 16 10 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 11 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 12 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 13 Si 0.89 22.01 27.74 -169.99 -4.71 17.30 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 17 N -0.71 -5.78 4.52 -55.19 -0.25 -6.03 16 18 C 0.60 6.40 6.81 -12.97 -0.09 6.31 16 19 O -0.52 -7.19 16.78 5.16 0.09 -7.10 16 20 C -0.03 -0.32 6.70 -81.93 -0.55 -0.87 16 21 C -0.12 -1.42 6.41 -104.93 -0.67 -2.10 16 22 C -0.07 -0.62 10.06 -39.68 -0.40 -1.02 16 23 C -0.13 -0.97 9.92 -39.89 -0.40 -1.37 16 24 C -0.10 -0.76 9.89 -39.98 -0.40 -1.16 16 25 C -0.07 -0.68 10.09 -39.43 -0.40 -1.08 16 26 C 0.06 0.66 7.53 -83.13 -0.63 0.04 16 27 N -0.28 -3.44 11.88 33.21 0.39 -3.05 16 28 N -0.21 -2.27 3.71 -63.75 -0.24 -2.50 16 29 C 0.07 0.52 11.12 59.85 0.67 1.19 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.36 8.28 5.53 -40.82 -0.23 8.05 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 43 H 0.40 2.79 8.59 -40.82 -0.35 2.44 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.67 7.56 -51.93 -0.39 0.28 16 50 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 416.03 15.07 6.27 6.27 Total: -1.00 -36.11 416.03 -9.48 -45.59 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.12 Total: 4.93 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.36 Total: -8.55 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.36 Total: -58.44 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.11 -9.48 -45.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176006901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.737 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds