Wall clock time and date at job start Wed Apr 1 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47270 * 2 1 4 4 C 1.53000 * 109.47554 * 240.00050 * 2 1 3 5 5 C 1.52995 * 109.47415 * 175.00098 * 4 2 1 6 6 C 1.52997 * 109.47087 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47085 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.47263 * 179.97438 * 7 6 5 9 9 C 1.36937 * 120.00098 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99922 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99935 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99742 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00038 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47033 * 90.00288 * 13 11 9 15 15 H 1.48501 * 109.47216 * 209.99872 * 13 11 9 16 16 H 1.48504 * 109.47100 * 330.00315 * 13 11 9 17 17 N 1.46501 * 109.46944 * 119.99702 * 2 1 3 18 18 C 1.34774 * 120.00092 * 274.99844 * 17 2 1 19 19 O 1.21732 * 119.99841 * 5.22461 * 18 17 2 20 20 C 1.46422 * 120.00344 * 185.21859 * 18 17 2 21 21 C 1.40114 * 126.85592 * 265.96476 * 20 18 17 22 22 C 1.40059 * 136.36939 * 359.97438 * 21 20 18 23 23 C 1.36073 * 119.47099 * 179.97438 * 22 21 20 24 24 C 1.39490 * 121.56771 * 0.03340 * 23 22 21 25 25 C 1.35820 * 121.84047 * 359.97438 * 24 23 22 26 26 C 1.40932 * 119.54390 * 359.97438 * 25 24 23 27 27 N 1.32147 * 135.41864 * 180.02562 * 26 25 24 28 28 N 1.28448 * 111.38919 * 180.02562 * 27 26 25 29 29 C 1.46500 * 124.15321 * 179.97438 * 28 27 26 30 30 H 1.09006 * 109.46839 * 60.00391 * 1 2 3 31 31 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47193 * 300.00293 * 1 2 3 33 33 H 1.09002 * 109.46920 * 295.00040 * 4 2 1 34 34 H 1.08996 * 109.47224 * 54.99469 * 4 2 1 35 35 H 1.09002 * 109.47029 * 299.99875 * 5 4 2 36 36 H 1.09006 * 109.46908 * 59.99536 * 5 4 2 37 37 H 1.08996 * 109.47491 * 299.99600 * 6 5 4 38 38 H 1.08996 * 109.47434 * 60.00074 * 6 5 4 39 39 H 1.09002 * 109.47153 * 300.00100 * 7 6 5 40 40 H 1.09006 * 109.46786 * 59.99762 * 7 6 5 41 41 H 0.97001 * 120.00156 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00047 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00023 * 95.00622 * 17 2 1 44 44 H 1.08002 * 120.26289 * 0.05448 * 22 21 20 45 45 H 1.08001 * 119.21862 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.07844 * 180.26154 * 24 23 22 47 47 H 1.08001 * 120.22367 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.46846 * 85.44067 * 29 28 27 49 49 H 1.08998 * 109.46840 * 205.43545 * 29 28 27 50 50 H 1.08998 * 109.47612 * 325.44366 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3350 -2.5625 7 6 5.5998 -1.2265 -2.6272 8 7 6.0882 -1.9181 -3.8227 9 6 7.4303 -1.9547 -4.0922 10 1 8.1286 -1.4733 -3.4237 11 6 7.8931 -2.6096 -5.2253 12 7 9.1831 -2.6443 -5.4846 13 14 6.6852 -3.4416 -6.3820 14 1 6.2497 -2.4750 -7.4219 15 1 7.3424 -4.6044 -7.0312 16 1 5.5034 -3.9069 -5.6125 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.7688 1.1361 2.4371 20 6 2.7416 -0.6761 3.5223 21 6 2.0606 -1.3414 4.5503 22 6 0.7253 -1.6236 4.8648 23 6 0.4374 -2.3237 5.9955 24 6 1.4423 -2.7693 6.8542 25 6 2.7557 -2.5283 6.6062 26 6 3.1244 -1.8094 5.4515 27 7 4.2641 -1.4086 4.9162 28 7 4.0671 -0.7649 3.8222 29 6 5.1368 -0.1954 2.9990 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7517 -1.7715 -1.2056 34 1 1.6055 -0.2618 -2.1369 35 1 3.8532 0.4370 -1.3573 36 1 3.9995 -1.0727 -0.4258 37 1 3.7867 -2.3853 -2.5184 38 1 3.6404 -0.8760 -3.4504 39 1 5.8877 -0.1762 -2.6715 40 1 6.0347 -1.6854 -1.7392 41 1 5.4611 -2.3509 -4.4230 42 1 9.5065 -3.1016 -6.2765 43 1 2.2490 -1.6317 1.1527 44 1 -0.0694 -1.2893 4.2143 45 1 -0.5937 -2.5395 6.2338 46 1 1.1685 -3.3254 7.7386 47 1 3.5123 -2.8853 7.2893 48 1 5.5189 -0.9585 2.3210 49 1 4.7439 0.6407 2.4205 50 1 5.9433 0.1553 3.6429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176006901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:21 Heat of formation + Delta-G solvation = 36.531903 kcal Electronic energy + Delta-G solvation = -29316.489592 eV Core-core repulsion = 25344.257094 eV Total energy + Delta-G solvation = -3972.232497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.56932 -40.85046 -38.68668 -38.13229 -36.97995 -34.84161 -33.94487 -33.39798 -32.91864 -31.88018 -30.36558 -29.05915 -28.49145 -25.89242 -24.97465 -23.83479 -23.38605 -23.17810 -22.16636 -21.73781 -20.95423 -19.63066 -19.07623 -18.48226 -17.84164 -17.36461 -17.11314 -16.64538 -16.35124 -16.09707 -15.88878 -15.68810 -15.15051 -15.11858 -14.89283 -14.78283 -14.47669 -14.27604 -14.24990 -14.15183 -13.92050 -13.55840 -13.14797 -12.97302 -12.93225 -12.80679 -12.72740 -12.67044 -12.48995 -12.29806 -12.09992 -11.89462 -11.79922 -11.59484 -11.45648 -11.37995 -11.37267 -11.22927 -10.97932 -10.27654 -9.69480 -9.31600 -8.80206 -8.04919 -5.38907 -0.48775 0.61784 0.83873 1.28791 1.36661 1.41280 1.48811 1.49884 2.03266 2.47322 2.82385 3.04917 3.26317 3.33689 3.49311 3.83660 3.91088 3.93528 4.00043 4.06868 4.11133 4.12532 4.21852 4.31419 4.37320 4.38863 4.44168 4.55488 4.56684 4.63323 4.72532 4.81811 4.87198 4.90103 4.96274 5.00738 5.05274 5.07091 5.25222 5.31817 5.32810 5.36124 5.48365 5.48884 5.50786 5.55802 5.60695 5.73280 5.97562 6.19519 6.25763 6.79566 6.89084 7.06398 7.83183 8.02290 9.16621 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.002127 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.442288 B =13157.879354 C =14211.084269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.078 0.922 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.118 4.118 7 C 0.150 3.850 8 N -0.762 5.762 9 C -0.239 4.239 10 H 0.053 0.947 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.961 3.039 14 H -0.277 1.277 15 H -0.296 1.296 16 H -0.248 1.248 17 N -0.692 5.692 18 C 0.605 3.395 19 O -0.555 6.555 20 C -0.042 4.042 21 C -0.142 4.142 22 C -0.086 4.086 23 C -0.118 4.118 24 C -0.093 4.093 25 C -0.094 4.094 26 C 0.033 3.967 27 N -0.307 5.307 28 N -0.215 5.215 29 C 0.064 3.936 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.413 0.587 44 H 0.130 0.870 45 H 0.156 0.844 46 H 0.162 0.838 47 H 0.143 0.857 48 H 0.114 0.886 49 H 0.105 0.895 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.110 1.410 22.656 33.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.408 5.408 9 C -0.370 4.370 10 H 0.071 0.929 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.787 3.213 14 H -0.203 1.203 15 H -0.222 1.222 16 H -0.173 1.173 17 N -0.344 5.344 18 C 0.388 3.612 19 O -0.432 6.432 20 C -0.179 4.179 21 C -0.151 4.151 22 C -0.106 4.106 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.110 4.110 27 N -0.145 5.145 28 N 0.002 4.998 29 C -0.074 4.074 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.250 0.750 44 H 0.148 0.852 45 H 0.173 0.827 46 H 0.179 0.821 47 H 0.161 0.839 48 H 0.132 0.868 49 H 0.123 0.877 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.811 2.356 22.795 32.334 hybrid contribution -0.247 -0.659 -1.050 1.264 sum -23.057 1.697 21.745 31.739 Atomic orbital electron populations 1.22142 0.94064 1.03032 1.02610 1.21177 0.94858 0.96935 0.83067 0.90347 1.21873 0.94850 1.02048 0.96732 1.21464 0.95669 1.00644 0.96956 1.21669 0.93238 1.01350 0.99278 1.20863 0.94352 0.94540 0.87862 1.42774 1.03482 1.66495 1.28001 1.19059 0.84104 1.28003 1.05877 0.92890 1.25622 0.97699 1.02169 1.00557 1.69899 1.14274 1.49899 1.29462 0.85322 0.79005 0.77941 0.78985 1.20267 1.22233 1.17251 1.46103 1.65204 1.14624 1.08438 1.16641 0.78215 0.84762 0.81581 1.90875 1.50459 1.18170 1.83647 1.21070 0.85743 1.10279 1.00772 1.19699 0.96307 1.03709 0.95402 1.20281 0.92440 0.99268 0.98656 1.21096 1.01165 0.97745 0.93702 1.21057 0.91234 0.98833 1.00373 1.20252 0.97843 0.99144 0.94173 1.21096 0.88266 1.02895 0.98764 1.73413 1.25445 1.15704 0.99926 1.45993 1.05540 1.33265 1.15035 1.22758 0.88763 1.00792 0.95122 0.89975 0.91150 0.93705 0.89797 0.88697 0.91880 0.91740 0.91467 0.91472 0.96273 0.96159 0.79996 0.93292 0.74994 0.85211 0.82680 0.82069 0.83929 0.86810 0.87691 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 71.98 0.68 -1.34 16 2 C 0.14 2.00 2.54 44.99 0.11 2.12 16 3 H 0.08 1.36 7.66 -2.38 -0.02 1.34 16 4 C -0.12 -1.44 4.75 30.59 0.15 -1.29 16 5 C -0.11 -1.89 5.10 30.59 0.16 -1.73 16 6 C -0.12 -2.85 5.33 30.59 0.16 -2.68 16 7 C 0.15 5.35 6.26 86.38 0.54 5.89 16 8 N -0.76 -35.14 5.41 -343.44 -1.86 -37.00 16 9 C -0.24 -13.76 10.47 84.03 0.88 -12.88 16 10 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 11 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 12 N -0.98 -63.41 13.97 21.65 0.30 -63.11 16 13 Si 0.96 44.92 27.74 68.60 1.90 46.83 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 17 N -0.69 -10.49 4.52 -446.73 -2.02 -12.51 16 18 C 0.61 12.94 6.81 86.37 0.59 13.53 16 19 O -0.55 -15.70 16.78 -4.45 -0.07 -15.78 16 20 C -0.04 -0.95 6.70 41.05 0.28 -0.67 16 21 C -0.14 -3.25 6.41 -20.07 -0.13 -3.38 16 22 C -0.09 -1.55 10.06 22.21 0.22 -1.33 16 23 C -0.12 -1.55 9.92 22.07 0.22 -1.33 16 24 C -0.09 -1.18 9.89 22.01 0.22 -0.96 16 25 C -0.09 -1.64 10.09 22.37 0.23 -1.42 16 26 C 0.03 0.79 7.53 42.07 0.32 1.11 16 27 N -0.31 -7.70 11.88 -48.85 -0.58 -8.28 16 28 N -0.21 -4.70 3.71 -355.62 -1.32 -6.02 16 29 C 0.06 0.96 11.12 127.77 1.42 2.38 16 30 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.07 7.75 -2.38 -0.02 1.05 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.37 15.87 5.53 -92.71 -0.51 15.36 16 42 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.41 5.00 8.59 -92.71 -0.80 4.21 16 44 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 46 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 47 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.10 1.44 7.56 -2.39 -0.02 1.42 16 50 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -80.55 416.03 2.44 -78.11 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.42 Total: 25.40 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 6.51 Total: -7.63 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.47 Total: -126.92 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.07 Total: -15.78 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.83 kcal Total: -80.55 2.44 -78.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176006901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.644 kcal (2) G-P(sol) polarization free energy of solvation -80.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds