Wall clock time and date at job start Wed Apr 1 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47584 * 2 1 4 4 C 1.53007 * 109.46696 * 120.00032 * 2 1 3 5 5 C 1.53007 * 109.46754 * 184.99889 * 4 2 1 6 6 C 1.53002 * 109.46731 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46700 * 179.97438 * 6 5 4 8 8 N 1.46510 * 109.46983 * 180.02562 * 7 6 5 9 9 C 1.36934 * 119.99904 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00409 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99680 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99973 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99812 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47230 * 59.99810 * 13 11 9 15 15 H 1.48500 * 109.46655 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46990 * 299.99570 * 13 11 9 17 17 N 1.46495 * 109.47317 * 239.99682 * 2 1 3 18 18 C 1.34780 * 120.00190 * 85.00458 * 17 2 1 19 19 O 1.21618 * 119.99594 * 359.97438 * 18 17 2 20 20 C 1.47384 * 120.00217 * 180.02562 * 18 17 2 21 21 N 1.31570 * 126.82684 * 0.02630 * 20 18 17 22 22 N 1.28384 * 111.97170 * 179.97438 * 21 20 18 23 23 C 1.46497 * 124.37390 * 179.97438 * 22 21 20 24 24 C 1.37051 * 111.25164 * 359.97438 * 22 21 20 25 25 C 1.39125 * 134.72438 * 180.02562 * 24 22 21 26 26 C 1.36686 * 119.78553 * 179.97438 * 25 24 22 27 27 C 1.38898 * 120.89319 * 0.02609 * 26 25 24 28 28 C 1.36724 * 120.52536 * 359.95696 * 27 26 25 29 29 C 1.39193 * 119.50624 * 0.02924 * 28 27 26 30 30 H 1.09002 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47139 * 300.00543 * 1 2 3 32 32 H 1.09004 * 109.46876 * 59.99940 * 1 2 3 33 33 H 1.08993 * 109.47171 * 304.99672 * 4 2 1 34 34 H 1.09000 * 109.46977 * 65.00279 * 4 2 1 35 35 H 1.08993 * 109.47104 * 299.99824 * 5 4 2 36 36 H 1.09000 * 109.47060 * 60.00441 * 5 4 2 37 37 H 1.08994 * 109.47236 * 300.00450 * 6 5 4 38 38 H 1.09001 * 109.47111 * 60.00239 * 6 5 4 39 39 H 1.09000 * 109.47735 * 299.99808 * 7 6 5 40 40 H 1.08991 * 109.47264 * 60.00806 * 7 6 5 41 41 H 0.97003 * 119.99870 * 0.02562 * 8 7 6 42 42 H 0.97001 * 119.99802 * 179.97438 * 12 11 9 43 43 H 0.97006 * 120.00476 * 265.00449 * 17 2 1 44 44 H 1.09001 * 109.46937 * 269.99794 * 23 22 21 45 45 H 1.08993 * 109.47188 * 30.00466 * 23 22 21 46 46 H 1.09001 * 109.47080 * 150.00507 * 23 22 21 47 47 H 1.07996 * 120.10990 * 359.67317 * 25 24 22 48 48 H 1.07998 * 119.55591 * 179.97438 * 26 25 24 49 49 H 1.08002 * 119.74199 * 180.02562 * 27 26 25 50 50 H 1.07989 * 120.24601 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3138 6 6 4.0746 -1.3341 2.5634 7 6 5.5995 -1.2267 2.6275 8 7 6.0878 -1.9174 3.8238 9 6 7.4299 -1.9547 4.0929 10 1 8.1284 -1.4746 3.4236 11 6 7.8926 -2.6095 5.2261 12 7 7.0413 -3.1950 6.0415 13 14 9.7234 -2.6598 5.5936 14 1 10.2360 -1.2744 5.7454 15 1 9.9550 -3.4135 6.8520 16 1 10.4344 -3.3310 4.4760 17 7 2.0183 -0.6906 -1.1961 18 6 2.1472 -0.0183 -2.3571 19 8 1.8576 1.1616 -2.4118 20 6 2.6380 -0.7133 -3.5606 21 7 2.9864 -1.9786 -3.6536 22 7 3.3723 -2.2847 -4.8392 23 6 3.8201 -3.6193 -5.2446 24 6 3.3113 -1.2015 -5.6766 25 6 3.6032 -0.9844 -7.0195 26 6 3.4243 0.2577 -7.5611 27 6 2.9540 1.3117 -6.7883 28 6 2.6591 1.1259 -5.4662 29 6 2.8339 -0.1313 -4.8949 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -0.2618 2.1370 34 1 1.7515 -1.7716 1.2056 35 1 3.9994 -1.0729 0.4261 36 1 3.8532 0.4369 1.3575 37 1 3.6399 -0.8743 3.4508 38 1 3.7862 -2.3844 2.5202 39 1 6.0339 -1.6869 1.7400 40 1 5.8883 -0.1766 2.6706 41 1 5.4604 -2.3489 4.4247 42 1 7.3646 -3.6529 6.8331 43 1 2.2490 -1.6319 -1.1525 44 1 4.8965 -3.7024 -5.0949 45 1 3.3103 -4.3718 -4.6431 46 1 3.5865 -3.7766 -6.2976 47 1 3.9746 -1.7936 -7.6308 48 1 3.6525 0.4221 -8.6038 49 1 2.8191 2.2855 -7.2355 50 1 2.2933 1.9484 -4.8697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176236735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:34 Heat of formation + Delta-G solvation = 49.010591 kcal Electronic energy + Delta-G solvation = -28843.494791 eV Core-core repulsion = 24871.803411 eV Total energy + Delta-G solvation = -3971.691381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80978 -39.75773 -38.13413 -36.90559 -35.20696 -34.01988 -33.17255 -31.54055 -30.91628 -30.48608 -30.18245 -27.60021 -27.39793 -24.47363 -24.02566 -23.09547 -22.41819 -21.91127 -20.77963 -20.59946 -20.27026 -18.30865 -17.57044 -16.97286 -16.69042 -16.38107 -16.28588 -15.60568 -15.05773 -14.91928 -14.68090 -14.49782 -14.44175 -13.94283 -13.85599 -13.56632 -13.38561 -13.23124 -13.10896 -12.89272 -12.85810 -12.35356 -12.33104 -12.26994 -11.71257 -11.56340 -11.42306 -11.24898 -11.22031 -10.95254 -10.76767 -10.65415 -10.40257 -10.32086 -10.26798 -10.19721 -9.97096 -9.62775 -9.20197 -9.12027 -8.81929 -8.33217 -6.86546 -5.72032 -3.00167 0.49429 1.01381 1.61025 1.96528 2.93901 3.07651 3.46828 3.48619 3.50515 3.52111 3.87135 4.04917 4.39538 4.55299 4.59452 4.62491 4.67360 4.69298 4.81580 4.93620 4.95328 5.03813 5.05249 5.16206 5.31670 5.33447 5.46260 5.50850 5.58589 5.59220 5.67272 5.75443 5.83413 5.86701 5.95375 6.01545 6.08409 6.16610 6.17331 6.27089 6.32399 6.36778 6.43404 6.44917 6.52831 6.53384 6.95264 6.99111 7.27297 7.56515 7.73692 8.04894 8.47507 9.57979 10.17739 10.52548 11.51036 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.001997 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.640920 B =14018.386639 C =15455.854193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.069 0.931 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.708 5.708 18 C 0.609 3.391 19 O -0.532 6.532 20 C -0.001 4.001 21 N -0.206 5.206 22 N -0.316 5.316 23 C 0.092 3.908 24 C 0.063 3.937 25 C -0.119 4.119 26 C -0.084 4.084 27 C -0.142 4.142 28 C -0.042 4.042 29 C -0.109 4.109 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.407 0.593 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.126 0.874 48 H 0.131 0.869 49 H 0.130 0.870 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.631 3.408 -29.550 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.164 4.164 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.359 5.359 18 C 0.393 3.607 19 O -0.406 6.406 20 C -0.171 4.171 21 N -0.036 5.036 22 N -0.109 5.109 23 C -0.048 4.048 24 C -0.048 4.048 25 C -0.141 4.141 26 C -0.105 4.105 27 C -0.161 4.161 28 C -0.063 4.063 29 C -0.116 4.116 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.242 0.758 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.144 0.856 48 H 0.149 0.851 49 H 0.148 0.852 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.524 3.139 -28.974 32.562 hybrid contribution 1.028 -0.261 -0.028 1.061 sum -13.496 2.877 -29.002 32.117 Atomic orbital electron populations 1.22182 0.95226 1.02175 1.02565 1.21110 0.93848 0.97787 0.83542 0.89049 1.21942 0.96895 1.01005 0.96608 1.21530 0.93981 1.01130 0.98680 1.21718 0.97192 1.00277 0.97093 1.20652 0.91083 0.95314 0.90501 1.42387 1.05294 1.64977 1.25217 1.19214 0.83952 1.28335 1.05417 0.91315 1.24754 0.97717 1.01042 0.97741 1.69657 1.32810 1.40785 1.15165 0.86249 0.85149 0.77472 0.77230 1.21278 1.21678 1.21321 1.45953 1.66416 1.14471 1.09100 1.16611 0.77300 0.85620 0.81163 1.90792 1.50638 1.14750 1.84434 1.22738 1.09553 0.90059 0.94786 1.72868 1.10301 1.16587 1.03807 1.45150 1.51474 1.09796 1.04457 1.22135 1.01671 0.78978 1.02043 1.19173 1.03879 0.87704 0.94081 1.19760 1.04878 0.98580 0.90853 1.20747 0.97787 0.91936 1.00036 1.20861 1.01858 0.99552 0.93848 1.20420 0.96041 0.95119 0.94672 1.19432 1.05440 0.94837 0.91868 0.92449 0.91366 0.92189 0.90050 0.91283 0.92096 0.91936 0.92037 0.92148 0.96663 0.96556 0.78347 0.93527 0.75816 0.89771 0.88351 0.88914 0.85559 0.85125 0.85217 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.14 1.49 2.57 -67.93 -0.17 1.31 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.13 -1.32 4.75 -26.72 -0.13 -1.45 16 5 C -0.12 -1.51 5.10 -26.73 -0.14 -1.65 16 6 C -0.12 -2.06 5.33 -26.73 -0.14 -2.21 16 7 C 0.15 3.24 6.26 -4.04 -0.03 3.21 16 8 N -0.73 -19.59 5.60 -59.91 -0.34 -19.93 16 9 C -0.24 -6.95 9.99 -15.06 -0.15 -7.11 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.94 -29.02 13.06 55.49 0.72 -28.29 16 13 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 N -0.71 -7.85 4.53 -54.89 -0.25 -8.10 16 18 C 0.61 8.02 7.78 -12.54 -0.10 7.92 16 19 O -0.53 -8.17 16.06 5.26 0.08 -8.08 16 20 C 0.00 -0.02 7.32 -80.76 -0.59 -0.61 16 21 N -0.21 -2.37 11.52 34.46 0.40 -1.97 16 22 N -0.32 -3.01 3.74 -65.50 -0.24 -3.25 16 23 C 0.09 0.45 11.24 59.85 0.67 1.12 16 24 C 0.06 0.63 6.85 -84.21 -0.58 0.06 16 25 C -0.12 -0.88 9.94 -39.81 -0.40 -1.27 16 26 C -0.08 -0.56 9.96 -39.90 -0.40 -0.96 16 27 C -0.14 -1.10 9.98 -39.88 -0.40 -1.50 16 28 C -0.04 -0.44 9.87 -39.77 -0.39 -0.83 16 29 C -0.11 -1.30 6.34 -105.05 -0.67 -1.96 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 42 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.41 4.09 8.34 -40.82 -0.34 3.75 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.22 8.09 -51.93 -0.42 -0.20 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 48 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 49 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 50 H 0.14 1.46 7.65 -52.49 -0.40 1.06 16 LS Contribution 418.75 15.07 6.31 6.31 Total: -1.00 -35.89 418.75 -9.84 -45.72 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.16 Total: 7.33 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.34 Total: -7.69 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.29 Total: -61.54 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.89 -9.84 -45.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176236735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.734 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds