Wall clock time and date at job start Wed Apr 1 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47217 * 2 1 4 4 C 1.53005 * 109.47265 * 240.00097 * 2 1 3 5 5 C 1.52997 * 109.47195 * 174.99869 * 4 2 1 6 6 C 1.53008 * 109.46862 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46862 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47085 * 180.02562 * 7 6 5 9 9 C 1.36941 * 120.00187 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99781 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99919 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00250 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00039 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46863 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47492 * 119.99422 * 13 11 9 16 16 H 1.48500 * 109.46954 * 239.99724 * 13 11 9 17 17 N 1.46492 * 109.47572 * 119.99606 * 2 1 3 18 18 C 1.34774 * 120.00409 * 275.00344 * 17 2 1 19 19 O 1.21278 * 119.99815 * 359.97438 * 18 17 2 20 20 C 1.50704 * 120.00153 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.46810 * 180.02562 * 20 18 17 22 22 C 1.39687 * 119.09006 * 270.01980 * 21 20 18 23 23 C 1.35652 * 121.72754 * 179.97438 * 22 21 20 24 24 C 1.41133 * 119.53232 * 0.03925 * 23 22 21 25 25 C 1.38244 * 134.81064 * 180.02562 * 24 23 22 26 26 N 1.33991 * 107.90445 * 179.97438 * 25 24 23 27 27 H 0.97001 * 125.02386 * 179.97438 * 26 25 24 28 28 N 1.39958 * 109.95453 * 0.02562 * 26 25 24 29 29 C 1.32064 * 108.96017 * 359.97438 * 28 26 25 30 30 C 1.35629 * 119.09216 * 90.00451 * 21 20 18 31 31 H 1.08999 * 109.46983 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46981 * 300.00256 * 1 2 3 33 33 H 1.09004 * 109.46956 * 59.99942 * 1 2 3 34 34 H 1.09002 * 109.46974 * 294.99965 * 4 2 1 35 35 H 1.09007 * 109.46922 * 54.99393 * 4 2 1 36 36 H 1.09008 * 109.46977 * 299.99607 * 5 4 2 37 37 H 1.08995 * 109.47264 * 60.00101 * 5 4 2 38 38 H 1.08993 * 109.46662 * 299.99848 * 6 5 4 39 39 H 1.09004 * 109.46855 * 60.00185 * 6 5 4 40 40 H 1.09008 * 109.46977 * 299.99715 * 7 6 5 41 41 H 1.08998 * 109.47604 * 59.99823 * 7 6 5 42 42 H 0.97006 * 120.00119 * 359.97438 * 8 7 6 43 43 H 0.97000 * 120.00276 * 180.02562 * 12 11 9 44 44 H 0.97007 * 120.00102 * 94.99529 * 17 2 1 45 45 H 1.08997 * 109.46662 * 59.99890 * 20 18 17 46 46 H 1.08998 * 109.47118 * 299.99813 * 20 18 17 47 47 H 1.07999 * 119.13844 * 359.97438 * 22 21 20 48 48 H 1.07996 * 120.23190 * 180.02562 * 23 22 21 49 49 H 1.07994 * 126.05393 * 359.95169 * 25 24 23 50 50 H 1.08002 * 120.20640 * 0.03864 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3351 -2.5627 7 6 5.5997 -1.2276 -2.6268 8 7 6.0880 -1.9182 -3.8230 9 6 7.4302 -1.9554 -4.0921 10 1 8.1287 -1.4753 -3.4228 11 6 7.8928 -2.6093 -5.2258 12 7 7.0415 -3.1940 -6.0418 13 14 9.7236 -2.6595 -5.5934 14 1 10.4621 -1.9324 -4.5298 15 1 10.1812 -4.0716 -5.6375 16 1 9.9829 -2.0140 -6.9054 17 7 2.0184 -0.6905 1.1961 18 6 2.1471 -0.0181 2.3571 19 8 1.8590 1.1587 2.4114 20 6 2.6490 -0.7287 3.5877 21 6 2.6992 0.2396 4.7414 22 6 3.8682 0.9712 4.9636 23 6 3.9718 1.8573 5.9855 24 6 2.8749 2.0510 6.8522 25 6 2.6354 2.8451 7.9582 26 7 1.3865 2.6012 8.3777 27 1 0.9623 3.0259 9.1397 28 7 0.7848 1.6423 7.5547 29 6 1.6438 1.2799 6.6193 30 6 1.6080 0.3769 5.5350 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.7517 -1.7715 -1.2056 35 1 1.6053 -0.2617 -2.1370 36 1 3.8531 0.4371 -1.3574 37 1 3.9994 -1.0727 -0.4261 38 1 3.7865 -2.3852 -2.5185 39 1 3.6402 -0.8759 -3.4506 40 1 5.8884 -0.1774 -2.6708 41 1 6.0340 -1.6870 -1.7389 42 1 5.4607 -2.3497 -4.4240 43 1 7.3648 -3.6513 -6.8338 44 1 2.2491 -1.6317 1.1526 45 1 3.6481 -1.1211 3.3984 46 1 1.9762 -1.5505 3.8326 47 1 4.7118 0.8276 4.3047 48 1 4.8872 2.4105 6.1348 49 1 3.3318 3.5391 8.4052 50 1 0.7176 -0.2022 5.3395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176392033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:08 Heat of formation + Delta-G solvation = 43.807918 kcal Electronic energy + Delta-G solvation = -28208.677680 eV Core-core repulsion = 24236.760694 eV Total energy + Delta-G solvation = -3971.916986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56794 -40.09084 -37.86397 -36.75206 -35.20845 -33.26155 -32.80988 -32.32259 -31.40739 -30.26601 -29.13129 -28.12008 -27.41782 -24.33984 -23.88645 -22.43453 -21.80979 -21.05658 -20.82939 -20.64673 -20.48008 -18.42243 -17.27556 -17.08834 -16.96685 -16.43833 -15.70382 -15.57992 -15.18921 -14.95894 -14.71310 -14.48071 -14.21493 -14.00266 -13.89605 -13.51102 -13.25800 -13.10335 -12.95799 -12.90760 -12.38114 -12.31109 -12.03221 -11.96220 -11.79916 -11.73071 -11.41286 -11.23126 -10.96844 -10.80750 -10.68052 -10.62738 -10.61200 -10.38207 -10.28052 -9.97557 -9.93677 -9.65011 -9.16025 -8.93157 -8.84429 -7.91307 -6.88137 -5.73828 -3.02082 0.31116 1.50551 2.14443 2.33896 2.54767 3.04195 3.44982 3.50434 3.52876 3.63086 3.92390 4.23171 4.48002 4.53579 4.65195 4.72301 4.81945 4.86099 4.95382 4.96962 5.02631 5.19726 5.22052 5.29796 5.33854 5.37684 5.45909 5.49396 5.57434 5.65378 5.73362 5.81979 5.87008 5.94912 5.99497 6.14382 6.14760 6.22928 6.26972 6.33436 6.39625 6.40962 6.45170 6.49478 6.59187 6.69439 6.92224 6.96190 7.25184 7.38760 7.73207 8.13410 8.45618 9.56413 10.15969 10.50409 11.49355 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.001611 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.307292 B =17373.499785 C =18832.434251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.724 5.724 18 C 0.516 3.484 19 O -0.531 6.531 20 C -0.108 4.108 21 C -0.017 4.017 22 C -0.135 4.135 23 C -0.045 4.045 24 C -0.206 4.206 25 C 0.079 3.921 26 N -0.428 5.428 27 H 0.443 0.557 28 N -0.310 5.310 29 C 0.109 3.891 30 C -0.094 4.094 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.401 0.599 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.188 0.812 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 9.187 29.510 33.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.377 5.377 18 C 0.301 3.699 19 O -0.407 6.407 20 C -0.148 4.148 21 C -0.022 4.022 22 C -0.155 4.155 23 C -0.065 4.065 24 C -0.215 4.215 25 C -0.078 4.078 26 N -0.129 5.129 27 H 0.287 0.713 28 N -0.138 5.138 29 C -0.044 4.044 30 C -0.115 4.115 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.235 0.765 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.204 0.796 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.382 9.903 30.040 35.172 hybrid contribution 1.512 -0.261 -0.425 1.592 sum -13.870 9.642 29.615 34.094 Atomic orbital electron populations 1.22175 0.95517 1.02006 1.02430 1.21022 0.93644 0.97724 0.83917 0.89416 1.21939 0.96858 1.00919 0.96759 1.21515 0.93970 1.01060 0.98605 1.21730 0.97219 1.00262 0.97154 1.20652 0.91036 0.95315 0.90531 1.42401 1.05323 1.64965 1.25214 1.19311 0.83951 1.28270 1.05399 0.91160 1.24745 0.97705 1.01023 0.97708 1.69673 1.32660 1.40907 1.15113 0.86113 0.85113 0.77202 0.77766 1.20567 1.21877 1.21880 1.46123 1.67709 1.14143 1.09688 1.20451 0.77698 0.87431 0.84273 1.90738 1.49266 1.15848 1.84852 1.20787 1.04520 0.98082 0.91426 1.18752 0.93526 0.95905 0.94007 1.20408 0.97827 0.98345 0.98917 1.20177 0.96122 0.96912 0.93323 1.19663 0.97420 1.04002 1.00457 1.22698 0.88384 1.00200 0.96482 1.46308 1.10418 1.31065 1.25075 0.71339 1.77680 1.19241 1.09579 1.07320 1.20856 0.91650 0.96877 0.95060 1.19602 0.98621 0.99390 0.93893 0.92525 0.92311 0.91629 0.91358 0.90313 0.92027 0.92082 0.92141 0.92095 0.96584 0.96611 0.78361 0.93614 0.76497 0.87362 0.87746 0.85864 0.85712 0.79553 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.37 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.04 7.58 -51.92 -0.39 0.64 16 4 C -0.13 -1.22 4.75 -26.73 -0.13 -1.35 16 5 C -0.11 -1.37 5.10 -26.73 -0.14 -1.50 16 6 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 7 C 0.15 3.11 6.26 -4.05 -0.03 3.09 16 8 N -0.74 -19.16 5.60 -59.91 -0.34 -19.49 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 10 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 13 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 17 N -0.72 -6.26 4.53 -53.81 -0.24 -6.50 16 18 C 0.52 5.33 7.79 -10.98 -0.09 5.24 16 19 O -0.53 -7.77 15.70 5.56 0.09 -7.68 16 20 C -0.11 -0.80 5.77 -29.03 -0.17 -0.97 16 21 C -0.02 -0.16 4.33 -105.01 -0.45 -0.62 16 22 C -0.14 -1.27 9.51 -39.97 -0.38 -1.65 16 23 C -0.05 -0.39 10.09 -39.41 -0.40 -0.79 16 24 C -0.21 -1.95 6.33 -105.19 -0.67 -2.62 16 25 C 0.08 0.48 12.08 -16.61 -0.20 0.28 16 26 N -0.43 -2.87 7.18 30.84 0.22 -2.64 16 27 H 0.44 1.19 8.96 -182.70 -1.64 -0.45 16 28 N -0.31 -3.44 12.70 33.25 0.42 -3.02 16 29 C 0.11 1.26 7.49 -83.05 -0.62 0.64 16 30 C -0.09 -1.01 9.65 -39.41 -0.38 -1.39 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 43 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.40 2.54 8.60 -40.82 -0.35 2.19 16 45 H 0.11 0.60 8.07 -51.93 -0.42 0.18 16 46 H 0.10 0.54 8.06 -51.93 -0.42 0.12 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 48 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 49 H 0.19 0.28 8.06 -52.49 -0.42 -0.14 16 50 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 418.17 15.07 6.30 6.30 Total: -1.00 -38.20 418.17 -11.10 -49.30 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -9.40 Total: 5.27 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.86 Total: -11.25 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.79 Total: -59.59 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -38.20 -11.10 -49.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176392033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.113 kcal (2) G-P(sol) polarization free energy of solvation -38.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds