Wall clock time and date at job start Wed Apr 1 2020 03:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 C 1.53001 * 109.47204 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47003 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47170 * 180.02562 * 7 6 5 9 9 C 1.36929 * 119.99984 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00189 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99944 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00084 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46949 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47018 * 120.00556 * 13 11 9 16 16 H 1.48500 * 109.47136 * 240.00458 * 13 11 9 17 17 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 2 1 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 2 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 2 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 C 1.34233 * 126.56781 * 264.68505 * 21 20 18 23 23 N 1.36918 * 109.91324 * 179.83179 * 22 21 20 24 24 H 0.97002 * 124.98850 * 180.18467 * 23 22 21 25 25 C 1.37424 * 110.02635 * 0.44912 * 23 22 21 26 26 N 1.32655 * 133.19215 * 179.73705 * 25 23 22 27 27 C 1.31589 * 121.67025 * 179.97438 * 26 25 23 28 28 C 1.38658 * 121.58270 * 0.02562 * 27 26 25 29 29 C 1.38202 * 119.41616 * 359.97438 * 28 27 26 30 30 C 1.39699 * 118.03384 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 33 33 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 34 34 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 35 35 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 36 36 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 37 37 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 38 38 H 1.09001 * 109.46982 * 299.99895 * 6 5 4 39 39 H 1.08994 * 109.47052 * 60.00362 * 6 5 4 40 40 H 1.09001 * 109.46897 * 299.99618 * 7 6 5 41 41 H 1.08998 * 109.47635 * 60.00234 * 7 6 5 42 42 H 0.96995 * 119.99345 * 359.97438 * 8 7 6 43 43 H 0.96996 * 119.99812 * 179.97438 * 12 11 9 44 44 H 0.97001 * 119.99790 * 264.99588 * 17 2 1 45 45 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 46 46 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 47 47 H 1.07995 * 125.04097 * 359.97438 * 22 21 20 48 48 H 1.08000 * 119.20654 * 180.02562 * 27 26 25 49 49 H 1.08001 * 120.29495 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.98349 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3350 2.5628 7 6 5.5996 -1.2264 2.6276 8 7 6.0880 -1.9181 3.8232 9 6 7.4300 -1.9546 4.0928 10 1 8.1284 -1.4732 3.4243 11 6 7.8928 -2.6094 5.2259 12 7 7.0416 -3.1956 6.0409 13 14 9.7236 -2.6598 5.5933 14 1 10.4620 -1.9318 4.5302 15 1 9.9830 -2.0154 6.9058 16 1 10.1812 -4.0719 5.6362 17 7 2.0184 -0.6906 -1.1961 18 6 2.1524 -0.0169 -2.3557 19 8 1.8639 1.1598 -2.4102 20 6 2.6607 -0.7259 -3.5845 21 6 2.7160 0.2436 -4.7369 22 6 1.7729 0.4260 -5.6746 23 7 2.1735 1.3934 -6.5568 24 1 1.6570 1.6996 -7.3187 25 6 3.4171 1.8627 -6.2080 26 7 4.2228 2.7765 -6.7329 27 6 5.3938 3.0531 -6.2001 28 6 5.8457 2.4024 -5.0621 29 6 5.0504 1.4399 -4.4696 30 6 3.8109 1.1631 -5.0514 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6053 -0.2617 2.1370 35 1 1.7517 -1.7714 1.2057 36 1 3.9994 -1.0727 0.4261 37 1 3.8531 0.4371 1.3575 38 1 3.6402 -0.8758 3.4507 39 1 3.7865 -2.3852 2.5187 40 1 6.0345 -1.6854 1.7397 41 1 5.8876 -0.1761 2.6719 42 1 5.4607 -2.3500 4.4238 43 1 7.3650 -3.6535 6.8325 44 1 2.2491 -1.6318 -1.1525 45 1 3.6591 -1.1180 -3.3909 46 1 1.9895 -1.5478 -3.8336 47 1 0.8362 -0.1091 -5.7242 48 1 6.0178 3.8050 -6.6602 49 1 6.8107 2.6455 -4.6425 50 1 5.3776 0.9171 -3.5830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176781041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:27 Heat of formation + Delta-G solvation = 22.550445 kcal Electronic energy + Delta-G solvation = -28651.748548 eV Core-core repulsion = 24678.909769 eV Total energy + Delta-G solvation = -3972.838779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82503 -39.89829 -38.06262 -36.95421 -35.24114 -33.75235 -33.23258 -32.02372 -31.17230 -30.24722 -29.82259 -27.47830 -27.42807 -24.23143 -23.93811 -22.80464 -22.42890 -21.40642 -20.74899 -20.58648 -19.58742 -18.48572 -17.29688 -17.06874 -16.99797 -16.42085 -16.17656 -15.29724 -15.21363 -15.05122 -14.85465 -14.68352 -13.98136 -13.93392 -13.69250 -13.50396 -13.26637 -13.21682 -13.05139 -12.97092 -12.87059 -12.56767 -12.48588 -12.28366 -11.81941 -11.75703 -11.43237 -11.24994 -10.98716 -10.81778 -10.70089 -10.59328 -10.39670 -10.29961 -9.96631 -9.91987 -9.66150 -9.62892 -9.17406 -8.85594 -8.68484 -8.24643 -6.89467 -5.74911 -3.03175 0.76537 1.16280 2.25189 2.50466 2.54928 3.15864 3.44225 3.49697 3.52142 3.69975 4.23920 4.34251 4.40214 4.50892 4.63804 4.71646 4.78137 4.81319 4.93790 4.98458 5.00442 5.11935 5.15876 5.26806 5.30854 5.42849 5.46194 5.51316 5.55927 5.63246 5.67135 5.70980 5.80035 5.91683 5.96417 6.04967 6.11575 6.14564 6.23853 6.25279 6.31497 6.39298 6.43521 6.47596 6.69076 6.90476 6.94483 6.99984 7.38791 7.72097 7.77598 8.14145 8.44538 9.55310 10.14685 10.49198 11.48271 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.001955 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.399694 B =14315.502711 C =16420.891599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.725 5.725 18 C 0.512 3.488 19 O -0.532 6.532 20 C -0.068 4.068 21 C -0.143 4.143 22 C 0.073 3.927 23 N -0.581 5.581 24 H 0.419 0.581 25 C 0.285 3.715 26 N -0.503 5.503 27 C 0.135 3.865 28 C -0.201 4.201 29 C -0.025 4.025 30 C -0.134 4.134 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.400 0.600 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.176 0.824 48 H 0.160 0.840 49 H 0.138 0.862 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 6.357 -26.318 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.378 5.378 18 C 0.298 3.702 19 O -0.407 6.407 20 C -0.108 4.108 21 C -0.151 4.151 22 C -0.053 4.053 23 N -0.187 5.187 24 H 0.257 0.743 25 C 0.052 3.948 26 N -0.216 5.216 27 C -0.030 4.030 28 C -0.223 4.223 29 C -0.051 4.051 30 C -0.141 4.141 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.234 0.766 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.193 0.807 48 H 0.177 0.823 49 H 0.156 0.844 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.189 7.693 -27.221 32.107 hybrid contribution 0.928 -0.945 0.969 1.641 sum -14.262 6.747 -26.252 30.628 Atomic orbital electron populations 1.22164 0.95551 1.01955 1.02359 1.21008 0.93613 0.97705 0.83996 0.89510 1.21936 0.96859 1.00906 0.96773 1.21513 0.93979 1.01046 0.98602 1.21728 0.97234 1.00256 0.97141 1.20650 0.91022 0.95302 0.90545 1.42401 1.05346 1.64884 1.25286 1.19298 0.83932 1.28189 1.05421 0.91174 1.24759 0.97749 1.01041 0.97738 1.69673 1.32670 1.40837 1.15182 0.86107 0.85073 0.77209 0.77775 1.20551 1.21873 1.21869 1.46143 1.67779 1.14060 1.09816 1.20642 0.77678 0.87491 0.84376 1.90721 1.49295 1.15917 1.84806 1.19972 1.03816 0.96848 0.90205 1.19456 0.94856 1.02181 0.98586 1.21572 0.99393 0.93108 0.91246 1.41444 1.14963 1.34663 1.27630 0.74326 1.18353 0.87899 0.95169 0.93400 1.66459 1.05134 1.16263 1.33751 1.22427 0.90406 0.97334 0.92836 1.21879 1.01964 0.99654 0.98793 1.20985 0.91294 0.95062 0.97788 1.19655 0.96207 1.00461 0.97734 0.92535 0.91662 0.92394 0.90338 0.91361 0.92108 0.92056 0.92099 0.92132 0.96625 0.96588 0.78358 0.93607 0.76561 0.87918 0.88005 0.80668 0.82324 0.84441 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.49 37.16 0.35 -1.03 16 2 C 0.14 1.33 2.58 -67.93 -0.17 1.15 16 3 H 0.09 1.02 7.57 -51.93 -0.39 0.62 16 4 C -0.13 -1.20 4.75 -26.73 -0.13 -1.32 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 7 C 0.15 3.10 6.26 -4.04 -0.03 3.08 16 8 N -0.74 -19.10 5.60 -59.91 -0.34 -19.44 16 9 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 N -0.73 -5.98 4.53 -53.81 -0.24 -6.23 16 18 C 0.51 5.09 7.79 -10.99 -0.09 5.00 16 19 O -0.53 -7.63 15.69 5.55 0.09 -7.54 16 20 C -0.07 -0.48 6.23 -29.04 -0.18 -0.66 16 21 C -0.14 -1.32 4.81 -102.75 -0.49 -1.82 16 22 C 0.07 0.55 11.74 -16.69 -0.20 0.35 16 23 N -0.58 -4.87 6.05 -12.14 -0.07 -4.94 16 24 H 0.42 2.36 8.96 -40.82 -0.37 1.99 16 25 C 0.28 3.26 8.43 -155.69 -1.31 1.95 16 26 N -0.50 -5.86 10.39 -12.27 -0.13 -5.99 16 27 C 0.14 1.29 11.14 -17.50 -0.20 1.09 16 28 C -0.20 -1.84 10.10 -39.44 -0.40 -2.24 16 29 C -0.02 -0.26 10.22 -39.05 -0.40 -0.66 16 30 C -0.13 -1.51 6.37 -105.10 -0.67 -2.18 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.40 2.39 8.60 -40.82 -0.35 2.04 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.18 0.66 8.06 -52.49 -0.42 0.23 16 48 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 50 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 418.66 15.07 6.31 6.31 Total: -1.00 -37.51 418.66 -11.25 -48.76 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.14 Total: 7.77 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -4.43 Total: -8.41 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.06 Total: -64.49 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.09 Total: -7.54 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -37.51 -11.25 -48.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176781041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.314 kcal (2) G-P(sol) polarization free energy of solvation -37.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds