Wall clock time and date at job start Wed Apr 1 2020 03:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 C 1.53001 * 109.47204 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47003 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47170 * 180.02562 * 7 6 5 9 9 C 1.36929 * 119.99984 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00189 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99944 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00084 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46949 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47018 * 120.00556 * 13 11 9 16 16 H 1.48500 * 109.47136 * 240.00458 * 13 11 9 17 17 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 2 1 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 2 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 2 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 C 1.34233 * 126.56781 * 264.68505 * 21 20 18 23 23 N 1.36918 * 109.91324 * 179.83179 * 22 21 20 24 24 H 0.97002 * 124.98850 * 180.18467 * 23 22 21 25 25 C 1.37424 * 110.02635 * 0.44912 * 23 22 21 26 26 N 1.32655 * 133.19215 * 179.73705 * 25 23 22 27 27 C 1.31589 * 121.67025 * 179.97438 * 26 25 23 28 28 C 1.38658 * 121.58270 * 0.02562 * 27 26 25 29 29 C 1.38202 * 119.41616 * 359.97438 * 28 27 26 30 30 C 1.39699 * 118.03384 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 33 33 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 34 34 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 35 35 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 36 36 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 37 37 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 38 38 H 1.09001 * 109.46982 * 299.99895 * 6 5 4 39 39 H 1.08994 * 109.47052 * 60.00362 * 6 5 4 40 40 H 1.09001 * 109.46897 * 299.99618 * 7 6 5 41 41 H 1.08998 * 109.47635 * 60.00234 * 7 6 5 42 42 H 0.96995 * 119.99345 * 359.97438 * 8 7 6 43 43 H 0.96996 * 119.99812 * 179.97438 * 12 11 9 44 44 H 0.97001 * 119.99790 * 264.99588 * 17 2 1 45 45 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 46 46 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 47 47 H 1.07995 * 125.04097 * 359.97438 * 22 21 20 48 48 H 1.08000 * 119.20654 * 180.02562 * 27 26 25 49 49 H 1.08001 * 120.29495 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.98349 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3350 2.5628 7 6 5.5996 -1.2264 2.6276 8 7 6.0880 -1.9181 3.8232 9 6 7.4300 -1.9546 4.0928 10 1 8.1284 -1.4732 3.4243 11 6 7.8928 -2.6094 5.2259 12 7 7.0416 -3.1956 6.0409 13 14 9.7236 -2.6598 5.5933 14 1 10.4620 -1.9318 4.5302 15 1 9.9830 -2.0154 6.9058 16 1 10.1812 -4.0719 5.6362 17 7 2.0184 -0.6906 -1.1961 18 6 2.1524 -0.0169 -2.3557 19 8 1.8639 1.1598 -2.4102 20 6 2.6607 -0.7259 -3.5845 21 6 2.7160 0.2436 -4.7369 22 6 1.7729 0.4260 -5.6746 23 7 2.1735 1.3934 -6.5568 24 1 1.6570 1.6996 -7.3187 25 6 3.4171 1.8627 -6.2080 26 7 4.2228 2.7765 -6.7329 27 6 5.3938 3.0531 -6.2001 28 6 5.8457 2.4024 -5.0621 29 6 5.0504 1.4399 -4.4696 30 6 3.8109 1.1631 -5.0514 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6053 -0.2617 2.1370 35 1 1.7517 -1.7714 1.2057 36 1 3.9994 -1.0727 0.4261 37 1 3.8531 0.4371 1.3575 38 1 3.6402 -0.8758 3.4507 39 1 3.7865 -2.3852 2.5187 40 1 6.0345 -1.6854 1.7397 41 1 5.8876 -0.1761 2.6719 42 1 5.4607 -2.3500 4.4238 43 1 7.3650 -3.6535 6.8325 44 1 2.2491 -1.6318 -1.1525 45 1 3.6591 -1.1180 -3.3909 46 1 1.9895 -1.5478 -3.8336 47 1 0.8362 -0.1091 -5.7242 48 1 6.0178 3.8050 -6.6602 49 1 6.8107 2.6455 -4.6425 50 1 5.3776 0.9171 -3.5830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176781041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:26 Heat of formation + Delta-G solvation = -1.954701 kcal Electronic energy + Delta-G solvation = -28652.811171 eV Core-core repulsion = 24678.909769 eV Total energy + Delta-G solvation = -3973.901402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.48109 -40.67062 -38.73902 -37.97123 -36.77428 -34.72167 -34.42815 -33.06972 -32.35165 -31.39883 -30.51090 -28.79835 -28.08072 -25.90999 -24.62912 -23.80722 -23.49325 -22.40654 -21.98910 -21.41672 -20.24854 -19.16916 -19.10624 -17.99718 -17.70791 -17.16890 -16.89970 -16.67472 -16.21716 -15.99316 -15.91644 -15.52773 -15.39606 -15.26046 -14.72488 -14.54174 -14.30978 -14.17260 -14.05292 -13.84831 -13.63838 -13.36006 -13.17015 -13.12676 -12.94135 -12.88842 -12.83601 -12.44770 -12.37681 -12.21858 -12.10103 -11.87229 -11.77444 -11.46471 -11.35946 -11.33339 -10.94250 -10.73258 -10.37230 -9.94274 -9.38532 -9.00745 -8.88314 -7.96231 -5.25295 0.07280 0.43553 1.47282 1.48354 1.58646 1.61411 1.82571 1.90958 2.49598 2.55720 2.96327 3.37227 3.61726 3.63905 3.73494 3.82729 4.04579 4.08318 4.09355 4.12689 4.21358 4.24070 4.38979 4.42548 4.47062 4.54926 4.61892 4.64624 4.67779 4.74881 4.83474 4.89591 4.90812 4.97134 5.02213 5.05534 5.05817 5.17991 5.29610 5.35789 5.36018 5.47356 5.48082 5.49598 5.55356 5.60793 5.70604 6.02321 6.26993 6.43662 6.74543 7.07367 7.32558 7.45686 8.09482 8.32698 9.27591 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.001955 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.399694 B =14315.502711 C =16420.891599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.059 0.941 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.247 4.247 10 H 0.074 0.926 11 C -0.079 4.079 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.267 1.267 15 H -0.292 1.292 16 H -0.290 1.290 17 N -0.715 5.715 18 C 0.511 3.489 19 O -0.582 6.582 20 C -0.060 4.060 21 C -0.170 4.170 22 C 0.084 3.916 23 N -0.576 5.576 24 H 0.430 0.570 25 C 0.253 3.747 26 N -0.526 5.526 27 C 0.123 3.877 28 C -0.203 4.203 29 C -0.046 4.046 30 C -0.157 4.157 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.011 0.989 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.414 0.586 45 H 0.113 0.887 46 H 0.139 0.861 47 H 0.216 0.784 48 H 0.187 0.813 49 H 0.161 0.839 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 5.383 -27.251 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.078 0.922 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.379 4.379 10 H 0.092 0.908 11 C -0.271 4.271 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.191 1.191 15 H -0.220 1.220 16 H -0.217 1.217 17 N -0.368 5.368 18 C 0.299 3.701 19 O -0.461 6.461 20 C -0.100 4.100 21 C -0.177 4.177 22 C -0.043 4.043 23 N -0.183 5.183 24 H 0.269 0.731 25 C 0.020 3.980 26 N -0.239 5.239 27 C -0.042 4.042 28 C -0.224 4.224 29 C -0.073 4.073 30 C -0.164 4.164 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.132 0.868 46 H 0.156 0.844 47 H 0.232 0.768 48 H 0.203 0.797 49 H 0.178 0.822 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.594 6.707 -28.193 32.909 hybrid contribution 1.031 -0.596 1.221 1.706 sum -14.563 6.111 -26.972 31.255 Atomic orbital electron populations 1.22093 0.94569 1.02826 1.01873 1.20859 0.94294 0.96424 0.84403 0.92233 1.21834 0.94680 1.02038 0.96864 1.21414 0.95849 0.99911 0.97008 1.21602 0.93714 1.00997 0.98714 1.20865 0.94274 0.94179 0.88517 1.42648 1.04534 1.65284 1.26744 1.19689 0.85336 1.27497 1.05378 0.90826 1.25621 1.02274 1.01306 0.97866 1.69822 1.34606 1.41960 1.15647 0.85044 0.79867 0.77102 0.77571 1.19088 1.21961 1.21725 1.46068 1.67000 1.14649 1.09093 1.21174 0.76698 0.86926 0.85311 1.90703 1.51645 1.18186 1.85603 1.20020 1.05131 0.96865 0.87950 1.19791 0.94841 1.03051 1.00049 1.22259 1.00062 0.91995 0.89946 1.41563 1.14185 1.34522 1.28068 0.73085 1.18726 0.89118 0.95914 0.94259 1.66491 1.06019 1.16863 1.34577 1.22961 0.90284 0.97870 0.93121 1.22183 1.02680 0.98984 0.98525 1.21257 0.91721 0.95914 0.98401 1.20069 0.97088 1.01203 0.98014 0.90895 0.91177 0.93908 0.90099 0.89558 0.91182 0.93044 0.92705 0.91705 0.96186 0.97078 0.79426 0.93926 0.74876 0.86844 0.84354 0.76785 0.79666 0.82179 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.49 71.98 0.68 -1.71 16 2 C 0.15 2.52 2.58 44.99 0.12 2.64 16 3 H 0.06 1.39 7.57 -2.39 -0.02 1.38 16 4 C -0.12 -1.94 4.75 30.60 0.15 -1.79 16 5 C -0.10 -2.31 5.10 30.60 0.16 -2.15 16 6 C -0.11 -3.37 5.33 30.59 0.16 -3.20 16 7 C 0.15 5.94 6.26 86.38 0.54 6.48 16 8 N -0.75 -38.97 5.60 -343.44 -1.92 -40.89 16 9 C -0.25 -14.11 9.99 84.04 0.84 -13.27 16 10 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 12 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 13 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 N -0.72 -10.37 4.53 -442.54 -2.00 -12.37 16 18 C 0.51 9.49 7.79 87.66 0.68 10.18 16 19 O -0.58 -16.75 15.69 -3.04 -0.05 -16.80 16 20 C -0.06 -0.71 6.23 29.10 0.18 -0.53 16 21 C -0.17 -2.96 4.81 -18.65 -0.09 -3.05 16 22 C 0.08 1.11 11.74 82.98 0.97 2.09 16 23 N -0.58 -9.33 6.05 -192.33 -1.16 -10.49 16 24 H 0.43 4.57 8.96 -92.71 -0.83 3.74 16 25 C 0.25 5.87 8.43 133.93 1.13 6.99 16 26 N -0.53 -12.49 10.39 -192.74 -2.00 -14.49 16 27 C 0.12 2.34 11.14 84.83 0.95 3.28 16 28 C -0.20 -3.69 10.10 22.36 0.23 -3.46 16 29 C -0.05 -0.98 10.22 22.61 0.23 -0.75 16 30 C -0.16 -3.57 6.37 -20.18 -0.13 -3.69 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.44 7.75 -2.39 -0.02 1.42 16 37 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.37 20.45 7.67 -92.71 -0.71 19.74 16 43 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.41 3.68 8.60 -92.71 -0.80 2.88 16 45 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.22 0.89 8.06 -2.91 -0.02 0.87 16 48 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 49 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 50 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -82.83 418.66 1.05 -81.77 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -1.38 Total: 30.39 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 7.26 Total: -6.06 kcal Atomic # 7 Polarization: -130.94 SS G_CDS: -6.81 Total: -137.75 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.05 Total: -16.80 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -82.83 1.05 -81.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176781041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.819 kcal (2) G-P(sol) polarization free energy of solvation -82.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds