Wall clock time and date at job start Wed Apr 1 2020 03:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30393 * 2 1 4 4 C 1.54385 * 110.34047 * 237.82303 * 2 1 3 5 5 N 1.48415 * 104.48688 * 217.17999 * 4 2 1 6 6 C 1.34776 * 127.82855 * 219.58494 * 5 4 2 7 7 O 1.21479 * 120.00554 * 180.02562 * 6 5 4 8 8 C 1.48452 * 119.99765 * 0.02786 * 6 5 4 9 9 C 1.39539 * 120.55079 * 180.02562 * 8 6 5 10 10 C 1.38758 * 118.26306 * 179.97438 * 9 8 6 11 11 N 1.32199 * 119.15097 * 359.97438 * 10 9 8 12 12 C 1.31885 * 121.03562 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.04136 * 180.02562 * 12 11 10 14 14 C 1.52999 * 117.50034 * 8.62154 * 13 12 11 15 15 C 1.53002 * 60.00294 * 252.50973 * 14 13 12 16 16 N 1.31581 * 121.91677 * 359.73777 * 12 11 10 17 17 C 1.48150 * 104.33809 * 39.60850 * 5 4 2 18 18 C 1.54281 * 110.34394 * 122.17550 * 2 1 3 19 19 C 1.53001 * 110.34241 * 0.10496 * 18 2 1 20 20 C 1.53003 * 110.34526 * 237.95449 * 18 2 1 21 21 N 1.46505 * 109.47191 * 180.02562 * 20 18 2 22 22 C 1.36936 * 119.99643 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00365 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99684 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00162 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00087 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47256 * 59.99276 * 26 24 22 28 28 H 1.48500 * 109.47242 * 180.02562 * 26 24 22 29 29 H 1.48511 * 109.46889 * 299.99918 * 26 24 22 30 30 H 1.09005 * 109.47312 * 299.29673 * 1 2 3 31 31 H 1.08998 * 109.47322 * 59.29640 * 1 2 3 32 32 H 1.09005 * 109.47284 * 179.30031 * 1 2 3 33 33 H 1.08997 * 110.41271 * 335.94204 * 4 2 1 34 34 H 1.09004 * 110.40474 * 98.37591 * 4 2 1 35 35 H 1.08000 * 120.86758 * 359.97438 * 9 8 6 36 36 H 1.08009 * 120.42410 * 179.97438 * 10 9 8 37 37 H 1.08996 * 115.54725 * 154.33690 * 13 12 11 38 38 H 1.09000 * 117.49487 * 0.02562 * 14 13 12 39 39 H 1.08994 * 117.49952 * 145.02056 * 14 13 12 40 40 H 1.08994 * 117.50186 * 252.51588 * 15 14 13 41 41 H 1.08999 * 117.49760 * 107.48573 * 15 14 13 42 42 H 1.08999 * 110.41112 * 201.60110 * 17 5 4 43 43 H 1.09001 * 110.50499 * 79.22146 * 17 5 4 44 44 H 1.09001 * 109.47416 * 60.00373 * 19 18 2 45 45 H 1.09004 * 109.47417 * 179.97438 * 19 18 2 46 46 H 1.08998 * 109.47229 * 299.99650 * 19 18 2 47 47 H 1.09001 * 109.46306 * 299.99875 * 20 18 2 48 48 H 1.08995 * 109.46915 * 59.99782 * 20 18 2 49 49 H 0.96995 * 120.00136 * 359.97438 * 21 20 18 50 50 H 0.96996 * 120.00179 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7709 -1.2252 5 7 3.2692 -1.4794 -0.7206 6 6 4.4461 -1.6625 -1.3513 7 8 5.3423 -2.2702 -0.8007 8 6 4.6472 -1.1215 -2.7190 9 6 5.8608 -1.3049 -3.3829 10 6 5.9970 -0.7797 -4.6600 11 7 4.9810 -0.1292 -5.2006 12 6 3.8471 0.0261 -4.5452 13 6 2.7177 0.7750 -5.2046 14 6 2.8799 1.1412 -6.6812 15 6 2.9744 2.2283 -5.6086 16 7 3.6713 -0.4584 -3.3346 17 6 2.8824 -1.9400 0.6333 18 6 2.0663 -0.7703 1.2244 19 6 0.9061 -1.3037 2.0673 20 6 2.9650 0.1342 2.0701 21 7 3.4636 -0.6156 3.2258 22 6 4.2931 -0.0078 4.1300 23 1 4.5801 1.0240 3.9911 24 6 4.7652 -0.7181 5.2253 25 7 4.4159 -1.9758 5.3943 26 14 5.8962 0.1110 6.4593 27 1 5.2022 1.2782 7.0605 28 1 6.2567 -0.8555 7.5275 29 1 7.1294 0.5694 5.7703 30 1 -0.3634 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3634 -1.0276 -0.0125 33 1 1.3241 -1.4859 -1.5796 34 1 2.3383 -0.0776 -2.0213 35 1 6.6729 -1.8415 -2.9149 36 1 6.9213 -0.9008 -5.2055 37 1 1.7172 0.5188 -4.8562 38 1 3.8034 0.8402 -7.1758 39 1 1.9860 1.1258 -7.3047 40 1 2.1427 2.9279 -5.5264 41 1 3.9602 2.6426 -5.3975 42 1 3.7692 -2.1289 1.2383 43 1 2.2682 -2.8383 0.5700 44 1 0.2972 -1.9762 1.4631 45 1 1.3006 -1.8452 2.9272 46 1 0.2942 -0.4702 2.4119 47 1 3.8070 0.4752 1.4678 48 1 2.3924 0.9953 2.4147 49 1 3.2062 -1.5424 3.3503 50 1 4.7454 -2.4720 6.1598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182783565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:16 Heat of formation + Delta-G solvation = 49.300937 kcal Electronic energy + Delta-G solvation = -30791.927086 eV Core-core repulsion = 26820.248295 eV Total energy + Delta-G solvation = -3971.678790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.51976 -41.27339 -39.59887 -37.90481 -36.56866 -35.28402 -34.41446 -33.18317 -32.91510 -31.19358 -28.65017 -27.77709 -26.70822 -26.15301 -26.04351 -25.07163 -23.18836 -22.93873 -22.31800 -20.74910 -19.77859 -19.35271 -19.00310 -18.24594 -17.31154 -17.01156 -16.74957 -16.71405 -16.49430 -16.17476 -15.92231 -15.46225 -15.38180 -15.16895 -15.00261 -14.80845 -14.53857 -14.46709 -13.90943 -13.44525 -13.19318 -13.02829 -12.93854 -12.88749 -12.65659 -12.62751 -12.39855 -12.34036 -12.15905 -12.07163 -11.99058 -11.95160 -11.89589 -11.66168 -11.56454 -11.35910 -11.24821 -11.18834 -10.96992 -10.42224 -10.25516 -9.83788 -9.02019 -7.97682 -5.25960 -0.71052 -0.21303 1.42015 1.46044 1.50446 1.52014 1.62587 2.48149 2.50340 2.52947 2.85702 3.13277 3.27901 3.34860 3.55030 3.59491 3.60865 3.76174 3.88497 3.95314 4.12599 4.13959 4.16001 4.24502 4.33401 4.38122 4.46513 4.51435 4.59562 4.69088 4.71921 4.80599 4.85244 4.87063 4.92202 4.99025 4.99959 5.05277 5.12102 5.16127 5.22026 5.26028 5.34212 5.36837 5.40057 5.44578 5.47490 5.65445 5.68961 6.24467 6.35360 6.72496 6.89556 7.30966 8.06488 8.31187 9.25607 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.002911 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.954957 B = 9615.746285 C =10572.280380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.074 0.926 4 C 0.098 3.902 5 N -0.596 5.596 6 C 0.572 3.428 7 O -0.570 6.570 8 C 0.128 3.872 9 C -0.184 4.184 10 C 0.171 3.829 11 N -0.510 5.510 12 C 0.338 3.662 13 C -0.120 4.120 14 C -0.140 4.140 15 C -0.149 4.149 16 N -0.492 5.492 17 C 0.114 3.886 18 C -0.068 4.068 19 C -0.125 4.125 20 C 0.172 3.828 21 N -0.738 5.738 22 C -0.249 4.249 23 H 0.069 0.931 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.973 3.027 27 H -0.274 1.274 28 H -0.292 1.292 29 H -0.284 1.284 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.163 0.837 36 H 0.220 0.780 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.033 0.967 46 H 0.070 0.930 47 H -0.007 1.007 48 H 0.026 0.974 49 H 0.377 0.623 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.719 5.731 -28.058 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.024 4.024 5 N -0.326 5.326 6 C 0.359 3.641 7 O -0.449 6.449 8 C -0.019 4.019 9 C -0.207 4.207 10 C 0.003 3.997 11 N -0.224 5.224 12 C 0.072 3.928 13 C -0.140 4.140 14 C -0.178 4.178 15 C -0.187 4.187 16 N -0.209 5.209 17 C -0.009 4.009 18 C -0.070 4.070 19 C -0.183 4.183 20 C 0.045 3.955 21 N -0.381 5.381 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.266 4.266 25 N -0.617 5.617 26 Si 0.802 3.198 27 H -0.200 1.200 28 H -0.218 1.218 29 H -0.210 1.210 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.181 0.819 36 H 0.236 0.764 37 H 0.161 0.839 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.011 0.989 48 H 0.043 0.957 49 H 0.210 0.790 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.819 5.987 -28.120 30.073 hybrid contribution 1.909 -0.817 2.018 2.895 sum -6.910 5.170 -26.102 27.492 Atomic orbital electron populations 1.21850 0.91315 1.03103 1.02869 1.22159 0.98249 0.98731 0.91859 0.90790 1.23294 0.84643 0.96795 0.97623 1.48910 1.13054 1.53555 1.17105 1.17895 0.81286 0.80076 0.84841 1.90810 1.42768 1.44004 1.67297 1.21340 0.92049 0.94855 0.93639 1.23147 0.98549 1.01405 0.97563 1.23982 0.98048 0.87171 0.90507 1.68166 1.00997 1.15746 1.37468 1.22806 0.92428 0.91460 0.86155 1.20842 0.95240 0.98413 0.99504 1.23095 1.04916 1.00570 0.89185 1.23065 1.03791 0.89666 1.02201 1.68128 1.31733 1.10278 1.10720 1.22514 0.98740 0.97493 0.82143 1.21626 0.95329 0.94518 0.95488 1.21815 0.96274 1.01468 0.98696 1.20734 0.93653 0.93727 0.87390 1.42551 1.57220 1.12735 1.25632 1.19542 1.20640 0.95811 1.02073 0.91332 1.25548 1.03089 0.96811 1.01110 1.69799 1.50552 1.09774 1.31592 0.85227 0.78785 0.77361 0.78474 1.19963 1.21779 1.21002 0.91923 0.90522 0.91162 0.89212 0.85794 0.81945 0.76353 0.83901 0.88079 0.85903 0.85796 0.89772 0.93376 0.89392 0.89756 0.94821 0.91074 0.98915 0.95658 0.79000 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.93 71.98 0.57 -1.68 16 2 C -0.09 -2.17 3.30 -9.89 -0.03 -2.20 16 3 H 0.07 1.89 7.71 -2.39 -0.02 1.87 16 4 C 0.10 2.32 6.11 86.48 0.53 2.85 16 5 N -0.60 -19.54 3.32 -809.95 -2.69 -22.23 16 6 C 0.57 20.57 7.92 86.97 0.69 21.26 16 7 O -0.57 -25.20 16.69 -3.65 -0.06 -25.26 16 8 C 0.13 3.60 6.77 41.99 0.28 3.88 16 9 C -0.18 -4.16 9.72 22.71 0.22 -3.94 16 10 C 0.17 2.80 11.31 84.76 0.96 3.76 16 11 N -0.51 -9.63 9.32 -187.89 -1.75 -11.38 16 12 C 0.34 6.85 7.31 138.79 1.01 7.86 16 13 C -0.12 -1.67 6.23 -11.54 -0.07 -1.74 16 14 C -0.14 -1.41 10.01 30.59 0.31 -1.11 16 15 C -0.15 -1.64 10.24 30.60 0.31 -1.33 16 16 N -0.49 -11.84 6.70 -177.07 -1.19 -13.03 16 17 C 0.11 4.09 5.92 86.53 0.51 4.60 16 18 C -0.07 -2.22 0.73 -51.27 -0.04 -2.26 16 19 C -0.13 -3.69 7.10 71.98 0.51 -3.18 16 20 C 0.17 7.39 4.95 86.38 0.43 7.82 16 21 N -0.74 -39.63 4.79 -343.45 -1.64 -41.27 16 22 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 23 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 25 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 26 Si 0.97 48.38 29.55 68.60 2.03 50.40 16 27 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 29 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 30 H 0.06 1.10 6.89 -2.38 -0.02 1.08 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.06 6.69 -2.38 -0.02 1.05 16 33 H 0.09 1.77 7.85 -2.39 -0.02 1.75 16 34 H 0.12 2.83 5.20 -2.39 -0.01 2.82 16 35 H 0.16 3.57 7.74 -2.91 -0.02 3.55 16 36 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.23 7.53 -2.39 -0.02 1.21 16 39 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 2.25 6.94 -2.39 -0.02 2.23 16 43 H 0.09 2.79 7.83 -2.39 -0.02 2.78 16 44 H 0.08 1.91 6.72 -2.39 -0.02 1.90 16 45 H 0.03 1.23 6.75 -2.38 -0.02 1.21 16 46 H 0.07 1.94 6.84 -2.39 -0.02 1.92 16 47 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 49 H 0.38 21.21 5.99 -92.71 -0.56 20.66 16 50 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -79.00 397.66 2.88 -76.12 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.41 Total: 31.10 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 7.50 Total: 16.74 kcal Atomic # 7 Polarization: -142.11 SS G_CDS: -6.99 Total: -149.10 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.26 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.40 kcal Total: -79.00 2.88 -76.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182783565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.416 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds