Wall clock time and date at job start Wed Apr 1 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.39560 * 2 1 4 4 C 1.54390 * 110.34249 * 237.76464 * 2 1 3 5 5 N 1.48151 * 104.61765 * 217.26224 * 4 2 1 6 6 C 1.34773 * 127.84138 * 219.58675 * 5 4 2 7 7 O 1.21550 * 120.00244 * 184.73172 * 6 5 4 8 8 C 1.47839 * 119.99871 * 4.72604 * 6 5 4 9 9 C 1.39965 * 120.93815 * 320.26484 * 8 6 5 10 10 N 1.32132 * 118.92028 * 180.27282 * 9 8 6 11 11 C 1.31884 * 120.96894 * 359.48167 * 10 9 8 12 12 N 1.31856 * 122.09007 * 0.53245 * 11 10 9 13 13 C 1.32157 * 120.97000 * 359.73609 * 12 11 10 14 14 C 1.50706 * 120.53572 * 180.02562 * 13 12 11 15 15 C 1.52995 * 117.49876 * 2.49969 * 14 13 12 16 16 C 1.53002 * 117.50098 * 293.87409 * 14 13 12 17 17 C 1.48149 * 104.32073 * 39.84820 * 5 4 2 18 18 C 1.54289 * 110.34175 * 122.23140 * 2 1 3 19 19 C 1.52998 * 110.34217 * 359.89285 * 18 2 1 20 20 C 1.53003 * 110.34119 * 237.74300 * 18 2 1 21 21 N 1.46495 * 109.47053 * 180.02562 * 20 18 2 22 22 C 1.36939 * 120.00353 * 179.97438 * 21 20 18 23 23 H 1.08009 * 119.99389 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00613 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99928 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00343 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47277 * 89.99934 * 26 24 22 28 28 H 1.48500 * 109.47110 * 210.00261 * 26 24 22 29 29 H 1.48500 * 109.47111 * 330.00002 * 26 24 22 30 30 H 1.08997 * 109.47024 * 180.77748 * 1 2 3 31 31 H 1.08997 * 109.47262 * 300.78126 * 1 2 3 32 32 H 1.09004 * 109.46947 * 60.78179 * 1 2 3 33 33 H 1.08996 * 110.40371 * 98.48358 * 4 2 1 34 34 H 1.09000 * 110.50790 * 336.09910 * 4 2 1 35 35 H 1.07996 * 120.54066 * 359.97438 * 9 8 6 36 36 H 1.08003 * 118.95907 * 180.27004 * 11 10 9 37 37 H 1.09002 * 115.54633 * 148.20535 * 14 13 12 38 38 H 1.08996 * 117.50132 * 0.02562 * 15 14 13 39 39 H 1.09005 * 117.49415 * 145.02071 * 15 14 13 40 40 H 1.08997 * 117.49913 * 214.98082 * 16 14 13 41 41 H 1.09000 * 117.49590 * 0.02562 * 16 14 13 42 42 H 1.09002 * 110.40657 * 78.93645 * 17 5 4 43 43 H 1.08999 * 110.40568 * 201.36976 * 17 5 4 44 44 H 1.09000 * 109.47531 * 60.00146 * 19 18 2 45 45 H 1.09006 * 109.47211 * 180.02562 * 19 18 2 46 46 H 1.09001 * 109.47057 * 299.99988 * 19 18 2 47 47 H 1.09006 * 109.47062 * 299.99516 * 20 18 2 48 48 H 1.08998 * 109.47390 * 59.99457 * 20 18 2 49 49 H 0.97001 * 120.00247 * 359.97438 * 21 20 18 50 50 H 0.97002 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7722 -1.2245 5 7 3.2664 -1.4818 -0.7226 6 6 4.4425 -1.6665 -1.3544 7 8 5.3077 -2.3487 -0.8410 8 6 4.6801 -1.0397 -2.6720 9 6 3.6669 -0.9847 -3.6360 10 7 3.9246 -0.4200 -4.8024 11 6 5.1110 0.0955 -5.0595 12 7 6.0933 0.0653 -4.1804 13 6 5.9245 -0.4847 -2.9907 14 6 7.0538 -0.5133 -1.9932 15 6 8.3658 0.1653 -2.3917 16 6 8.2797 -1.3613 -2.3380 17 6 2.8779 -1.9478 0.6290 18 6 2.0663 -0.7716 1.2237 19 6 0.9061 -1.3012 2.0688 20 6 2.9691 0.1307 2.0675 21 7 3.4677 -0.6201 3.2224 22 6 4.3006 -0.0147 4.1251 23 1 4.5904 1.0164 3.9852 24 6 4.7726 -0.7258 5.2196 25 7 4.4199 -1.9825 5.3898 26 14 5.9083 0.1004 6.4513 27 1 5.0992 0.7320 7.5244 28 1 6.8147 -0.9140 7.0467 29 1 6.7138 1.1401 5.7618 30 1 -0.3633 -1.0275 0.0139 31 1 -0.3633 0.5259 0.8829 32 1 -0.3633 0.5017 -0.8970 33 1 2.3401 -0.0796 -2.0205 34 1 1.3243 -1.4861 -1.5812 35 1 2.6918 -1.4015 -3.4316 36 1 5.2848 0.5532 -6.0222 37 1 6.7572 -0.4601 -0.9456 38 1 8.4120 0.6329 -3.3752 39 1 8.9326 0.6654 -1.6063 40 1 8.7899 -1.8656 -1.5174 41 1 8.2696 -1.8982 -3.2866 42 1 2.2593 -2.8426 0.5592 43 1 3.7639 -2.1433 1.2329 44 1 0.2940 -1.9721 1.4660 45 1 1.3005 -1.8429 2.9287 46 1 0.2972 -0.4658 2.4143 47 1 3.8112 0.4690 1.4636 48 1 2.3998 0.9936 2.4128 49 1 3.2078 -1.5462 3.3478 50 1 4.7500 -2.4796 6.1545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183312164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:24 Heat of formation + Delta-G solvation = 63.352492 kcal Electronic energy + Delta-G solvation = -31257.631363 eV Core-core repulsion = 27286.561893 eV Total energy + Delta-G solvation = -3971.069469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61653 -40.11948 -38.24402 -37.29700 -34.87285 -33.75313 -33.29926 -32.30869 -31.54501 -29.62861 -27.35195 -26.25273 -25.85869 -25.40820 -24.67995 -23.31200 -22.37446 -21.47844 -21.20134 -19.94221 -18.45820 -18.17117 -17.57588 -17.16054 -16.67870 -16.19206 -15.59225 -15.34885 -15.07976 -14.85656 -14.46662 -14.28865 -14.12703 -13.88318 -13.73786 -13.58409 -13.04546 -12.91710 -12.74609 -12.27281 -12.09571 -12.01757 -11.75332 -11.65969 -11.58548 -11.47900 -11.44339 -11.26136 -10.98982 -10.83184 -10.64408 -10.55679 -10.41270 -10.34545 -10.21058 -9.92323 -9.79947 -9.61279 -9.58467 -9.55181 -8.86797 -8.67028 -6.90515 -5.75183 -3.03420 0.28154 0.69366 2.63275 2.86738 3.36573 3.44643 3.50060 3.51690 3.63884 3.77003 3.82669 4.10564 4.23795 4.49285 4.59164 4.62188 4.73437 4.81349 4.85556 4.94272 4.96227 5.08255 5.21732 5.28801 5.31485 5.45146 5.50708 5.52988 5.62222 5.62741 5.67037 5.78242 5.81252 5.87474 5.98615 5.99899 6.03769 6.07912 6.13519 6.14007 6.18416 6.25146 6.39874 6.49405 6.60339 6.67185 6.76583 6.84976 7.52099 7.71270 7.71330 8.10213 8.43705 9.55181 10.11705 10.46456 11.47673 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.003821 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.313794 B = 7325.922689 C = 9436.232177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.585 3.415 7 O -0.511 6.511 8 C -0.223 4.223 9 C 0.178 3.822 10 N -0.527 5.527 11 C 0.311 3.689 12 N -0.520 5.520 13 C 0.263 3.737 14 C -0.124 4.124 15 C -0.158 4.158 16 C -0.141 4.141 17 C 0.116 3.884 18 C -0.075 4.075 19 C -0.134 4.134 20 C 0.169 3.831 21 N -0.728 5.728 22 C -0.239 4.239 23 H 0.068 0.932 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.174 0.826 36 H 0.201 0.799 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.021 0.979 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 2.947 -20.906 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.027 4.027 5 N -0.346 5.346 6 C 0.371 3.629 7 O -0.386 6.386 8 C -0.231 4.231 9 C 0.011 3.989 10 N -0.241 5.241 11 C 0.024 3.976 12 N -0.234 5.234 13 C 0.117 3.883 14 C -0.143 4.143 15 C -0.195 4.195 16 C -0.179 4.179 17 C -0.006 4.006 18 C -0.076 4.076 19 C -0.191 4.191 20 C 0.042 3.958 21 N -0.374 5.374 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.191 0.809 36 H 0.217 0.783 37 H 0.151 0.849 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.038 0.962 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.963 3.089 -21.501 22.081 hybrid contribution 0.200 -0.169 1.499 1.521 sum -3.763 2.920 -20.003 20.562 Atomic orbital electron populations 1.21894 0.93958 1.02273 1.01804 1.22137 0.96196 0.99718 0.93649 0.89978 1.22744 0.86936 0.95616 0.97394 1.48803 1.12199 1.55133 1.18422 1.17274 0.81002 0.80949 0.83659 1.90865 1.42934 1.38506 1.66337 1.21546 0.97114 1.06135 0.98276 1.23588 0.98159 0.89793 0.87314 1.68444 1.23257 1.11778 1.20623 1.25161 0.83613 0.90604 0.98237 1.68236 1.34467 1.18163 1.02492 1.20893 0.91469 0.85591 0.90341 1.21026 0.86878 1.08674 0.97687 1.23029 0.97473 0.95258 1.03786 1.22885 0.97920 0.93942 1.03199 1.22682 1.00569 0.95809 0.81532 1.21790 0.96041 0.95319 0.94498 1.21871 0.96539 1.00953 0.99783 1.20636 0.93655 0.92949 0.88603 1.42382 1.57236 1.12881 1.24855 1.19184 1.20444 0.95721 1.01646 0.91394 1.24698 1.01041 0.96054 0.98936 1.69649 1.49033 1.08409 1.30995 0.86219 0.80457 0.78179 0.81515 1.21778 1.21760 1.20833 0.91936 0.91645 0.93008 0.90786 0.90458 0.80927 0.78266 0.84944 0.87413 0.88130 0.87634 0.88896 0.91190 0.88052 0.93027 0.91199 0.92119 0.96632 0.96171 0.78080 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.93 37.16 0.29 -0.97 16 2 C -0.10 -1.10 3.31 -89.22 -0.30 -1.40 16 3 H 0.08 0.98 7.71 -51.93 -0.40 0.58 16 4 C 0.10 0.99 5.00 -2.41 -0.01 0.98 16 5 N -0.61 -8.61 3.31 -170.17 -0.56 -9.17 16 6 C 0.58 9.19 7.09 -12.33 -0.09 9.11 16 7 O -0.51 -9.93 15.53 5.32 0.08 -9.85 16 8 C -0.22 -2.97 5.52 -104.69 -0.58 -3.55 16 9 C 0.18 1.92 9.09 -16.78 -0.15 1.77 16 10 N -0.53 -5.63 10.42 -14.24 -0.15 -5.78 16 11 C 0.31 3.10 12.27 -92.02 -1.13 1.97 16 12 N -0.52 -6.22 9.45 -10.48 -0.10 -6.32 16 13 C 0.26 3.55 6.53 -81.82 -0.53 3.02 16 14 C -0.12 -1.71 4.77 -91.77 -0.44 -2.14 16 15 C -0.16 -1.79 10.04 -26.73 -0.27 -2.06 16 16 C -0.14 -1.71 10.24 -26.73 -0.27 -1.98 16 17 C 0.12 1.83 5.92 -2.19 -0.01 1.81 16 18 C -0.08 -1.12 0.73 -152.89 -0.11 -1.23 16 19 C -0.13 -1.88 7.11 37.16 0.26 -1.62 16 20 C 0.17 3.32 4.96 -4.04 -0.02 3.30 16 21 N -0.73 -17.97 4.80 -59.91 -0.29 -18.26 16 22 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 23 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 26 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.06 0.52 6.62 -51.93 -0.34 0.18 16 31 H 0.06 0.62 6.98 -51.93 -0.36 0.26 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.69 5.86 -51.93 -0.30 0.38 16 34 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 35 H 0.17 1.45 6.40 -52.49 -0.34 1.11 16 36 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.13 2.12 7.11 -51.93 -0.37 1.76 16 38 H 0.11 1.16 7.58 -51.93 -0.39 0.77 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 43 H 0.10 2.05 7.00 -51.93 -0.36 1.69 16 44 H 0.05 0.59 6.68 -51.93 -0.35 0.24 16 45 H 0.07 1.19 6.74 -51.93 -0.35 0.84 16 46 H 0.06 0.82 6.89 -51.93 -0.36 0.46 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.38 9.87 5.99 -40.82 -0.24 9.62 16 50 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -33.18 393.76 -10.48 -43.66 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.49 Total: 9.75 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.60 Total: -0.21 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.37 Total: -66.87 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.18 -10.48 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183312164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.011 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds